Wall clock time and date at job start Fri Apr 10 2020 18:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30013 * 127.33290 * 2 1 4 4 O 1.20658 * 112.29854 * 179.66540 * 3 2 1 5 5 C 1.33488 * 113.15746 * 0.50453 * 4 3 2 6 6 C 1.50706 * 126.83303 * 179.77845 * 5 4 3 7 7 C 1.37361 * 106.34282 * 359.51693 * 5 4 3 8 8 C 1.47399 * 128.56953 * 180.28226 * 7 5 4 9 9 O 1.21610 * 120.00110 * 89.99605 * 8 7 5 10 10 N 1.34774 * 119.99929 * 270.00374 * 8 7 5 11 11 C 1.47517 * 118.76076 * 359.97438 * 10 8 7 12 12 C 1.53566 * 111.02973 * 221.61025 * 11 10 8 13 13 C 1.51537 * 109.58537 * 39.97606 * 12 11 10 14 14 O 1.42154 * 108.75523 * 268.60208 * 13 12 11 15 15 C 1.38014 * 119.43942 * 87.22884 * 14 13 12 16 16 H 1.08998 * 109.46840 * 56.57302 * 15 14 13 17 17 C 1.53004 * 109.46696 * 176.56784 * 15 14 13 18 18 N 1.46494 * 109.46982 * 299.99542 * 17 15 14 19 19 C 1.36943 * 120.00187 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00293 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00058 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00045 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47121 * 89.99633 * 23 21 19 25 25 H 1.48506 * 109.47098 * 209.99679 * 23 21 19 26 26 H 1.48498 * 109.47101 * 329.99577 * 23 21 19 27 27 C 1.45120 * 118.75786 * 179.73062 * 10 8 7 28 28 H 1.09003 * 109.47134 * 270.04198 * 1 2 3 29 29 H 1.08999 * 109.47304 * 30.04267 * 1 2 3 30 30 H 1.08994 * 109.47172 * 150.04349 * 1 2 3 31 31 H 1.08999 * 109.47015 * 269.69040 * 6 5 4 32 32 H 1.09000 * 109.46646 * 29.68192 * 6 5 4 33 33 H 1.09000 * 109.47248 * 149.68910 * 6 5 4 34 34 H 1.09006 * 109.16413 * 342.00558 * 11 10 8 35 35 H 1.08995 * 109.16331 * 101.20624 * 11 10 8 36 36 H 1.09001 * 109.45316 * 160.01268 * 12 11 10 37 37 H 1.08995 * 109.45202 * 279.96075 * 12 11 10 38 38 H 1.08994 * 109.58864 * 28.38001 * 13 12 11 39 39 H 1.09000 * 109.58946 * 148.66931 * 13 12 11 40 40 H 1.08995 * 109.47513 * 60.00051 * 17 15 14 41 41 H 1.09005 * 109.46823 * 179.97438 * 17 15 14 42 42 H 0.97009 * 120.00301 * 0.02562 * 18 17 15 43 43 H 0.97002 * 120.00161 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.46019 * 210.75640 * 27 10 8 45 45 H 1.08995 * 109.45794 * 330.71385 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 0.0065 5 6 3.6494 -0.6007 0.0013 6 6 4.9712 -1.3246 0.0022 7 6 2.3991 -1.1696 0.0009 8 6 2.0400 -2.5992 0.0017 9 8 1.8913 -3.1882 1.0552 10 7 1.8766 -3.2536 -1.1651 11 6 2.0633 -2.5124 -2.4268 12 6 0.9872 -2.8931 -3.4541 13 6 -0.3506 -3.0401 -2.7575 14 8 -0.5127 -4.3954 -2.3606 15 6 -0.0169 -4.8090 -1.1408 16 1 -0.4449 -4.1957 -0.3479 17 6 -0.3896 -6.2748 -0.9094 18 7 -1.8478 -6.4149 -0.9166 19 6 -2.4184 -7.6454 -0.7282 20 1 -1.7934 -8.5125 -0.5738 21 6 -3.8001 -7.7782 -0.7356 22 7 -4.3485 -8.9608 -0.5540 23 14 -4.8812 -6.2785 -1.0032 24 1 -5.1385 -6.1067 -2.4556 25 1 -6.1707 -6.4644 -0.2906 26 1 -4.1937 -5.0724 -0.4762 27 6 1.5289 -4.6621 -1.1329 28 1 -0.3633 0.0008 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8903 -0.5131 31 1 5.2904 -1.4994 -1.0253 32 1 5.7171 -0.7182 0.5161 33 1 4.8621 -2.2795 0.5163 34 1 2.0035 -1.4427 -2.2256 35 1 3.0466 -2.7443 -2.8359 36 1 0.9177 -2.1136 -4.2128 37 1 1.2553 -3.8375 -3.9275 38 1 -0.3776 -2.3962 -1.8785 39 1 -1.1515 -2.7588 -3.4413 40 1 0.0383 -6.8881 -1.7023 41 1 0.0024 -6.6016 0.0538 42 1 -2.4092 -5.6361 -1.0556 43 1 -5.3140 -9.0537 -0.5595 44 1 1.9462 -5.1593 -2.0086 45 1 1.9361 -5.1161 -0.2295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199798162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:12 Heat of formation + Delta-G solvation = 6.120253 kcal Electronic energy + Delta-G solvation = -28788.896598 eV Core-core repulsion = 24810.934398 eV Total energy + Delta-G solvation = -3977.962200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.23104 -40.70504 -38.64299 -35.86789 -34.90487 -34.78746 -33.95895 -32.94801 -31.17828 -29.61112 -29.07014 -28.32689 -26.94100 -25.79042 -24.14437 -22.33157 -21.82069 -21.09002 -20.67459 -19.54407 -18.30530 -17.94307 -17.68031 -16.82223 -16.69711 -16.52772 -15.87220 -15.16450 -14.95058 -14.50272 -14.33374 -14.01373 -13.87908 -13.76201 -13.56644 -13.52617 -13.43797 -13.12180 -12.91951 -12.80132 -12.64381 -12.51532 -12.22591 -11.96857 -11.56696 -11.47360 -11.22957 -10.97079 -10.82358 -10.52794 -10.31378 -10.17320 -10.07400 -9.69550 -9.60061 -9.54107 -8.85541 -8.77674 -7.16550 -5.71231 -3.05719 0.93525 1.55743 2.07936 2.43312 2.78508 3.43317 3.47438 3.49886 3.68255 3.76578 3.86827 4.19986 4.42563 4.51328 4.56286 4.65762 4.76205 4.81293 4.87882 4.95561 5.00428 5.08768 5.13827 5.18456 5.22045 5.29919 5.31741 5.36076 5.42887 5.47419 5.58629 5.64035 5.69370 5.76297 5.83579 5.92042 5.96546 6.28720 6.54446 6.65435 6.93492 7.78483 7.80717 7.86988 8.04783 8.47824 9.27589 10.00059 10.20748 11.47265 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019608 B = 0.003378 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.611066 B = 8286.924008 C = 8546.739698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.056 3.944 3 N -0.354 5.354 4 O 0.097 5.903 5 C 0.015 3.985 6 C -0.079 4.079 7 C -0.246 4.246 8 C 0.591 3.409 9 O -0.514 6.514 10 N -0.598 5.598 11 C 0.108 3.892 12 C -0.166 4.166 13 C 0.071 3.929 14 O -0.369 6.369 15 C 0.084 3.916 16 H 0.052 0.948 17 C 0.171 3.829 18 N -0.749 5.749 19 C -0.241 4.241 20 H 0.091 0.909 21 C 0.004 3.996 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.081 3.919 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.364 0.636 43 H 0.259 0.741 44 H 0.090 0.910 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.794 20.585 -4.649 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 N -0.061 5.061 4 O 0.035 5.965 5 C -0.048 4.048 6 C -0.136 4.136 7 C -0.253 4.253 8 C 0.377 3.623 9 O -0.389 6.389 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.204 4.204 13 C -0.006 4.006 14 O -0.287 6.287 15 C 0.024 3.976 16 H 0.070 0.930 17 C 0.043 3.957 18 N -0.395 5.395 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.717 3.283 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.205 1.205 27 C -0.042 4.042 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.197 0.803 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.429 21.191 -4.173 29.051 hybrid contribution -0.788 0.554 -0.059 0.965 sum 18.641 21.745 -4.232 28.952 Atomic orbital electron populations 1.20288 0.85064 1.04133 1.04344 1.24758 0.98603 0.86396 1.00907 1.73629 0.89089 1.23220 1.20129 1.84535 1.21508 1.22515 1.67964 1.24603 0.97316 0.83770 0.99143 1.20475 0.89003 0.99521 1.04610 1.21887 0.92985 0.95339 1.15137 1.17077 0.77139 0.84118 0.83992 1.90873 1.49513 1.67662 1.30812 1.47878 1.68697 1.10877 1.05642 1.21970 0.99296 0.96255 0.83933 1.22493 0.95842 1.03837 0.98242 1.22170 0.96209 0.83955 0.98241 1.86431 1.79217 1.26127 1.36956 1.22437 0.91188 0.98118 0.85851 0.93041 1.20595 0.86608 0.89548 0.98944 1.42544 1.00596 1.07644 1.88728 1.19061 0.90892 0.85910 1.41242 0.89169 1.24641 0.96340 0.96219 1.01965 1.69705 1.10262 1.21446 1.56981 0.86507 0.80435 0.83430 0.77941 1.21034 1.21857 1.20469 1.22589 0.97277 0.79797 1.04578 0.89281 0.89673 0.89967 0.88707 0.88969 0.88697 0.90332 0.91185 0.89572 0.89554 0.93595 0.89116 0.94623 0.93860 0.80267 0.93120 0.89205 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.49 36.01 0.38 -0.37 16 2 C 0.06 0.61 7.34 -79.77 -0.59 0.03 16 3 N -0.35 -4.03 12.01 34.78 0.42 -3.61 16 4 O 0.10 0.97 11.06 18.66 0.21 1.17 16 5 C 0.02 0.13 7.55 -34.62 -0.26 -0.13 16 6 C -0.08 -0.40 10.33 36.01 0.37 -0.03 16 7 C -0.25 -2.72 4.16 -102.89 -0.43 -3.15 16 8 C 0.59 7.62 7.42 -12.53 -0.09 7.52 16 9 O -0.51 -8.64 16.54 5.27 0.09 -8.56 16 10 N -0.60 -6.64 2.18 -173.44 -0.38 -7.02 16 11 C 0.11 0.88 6.03 -3.19 -0.02 0.86 16 12 C -0.17 -1.40 5.79 -27.18 -0.16 -1.56 16 13 C 0.07 0.82 6.38 36.42 0.23 1.05 16 14 O -0.37 -5.89 9.18 -26.53 -0.24 -6.13 16 15 C 0.08 1.37 2.74 -25.52 -0.07 1.30 16 16 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 17 C 0.17 3.40 5.95 -4.04 -0.02 3.37 16 18 N -0.75 -18.66 5.29 -59.91 -0.32 -18.98 16 19 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 20 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.94 -30.00 13.97 55.49 0.78 -29.23 16 23 Si 0.89 22.92 27.74 -169.99 -4.71 18.20 16 24 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 27 C 0.08 1.03 4.90 -3.57 -0.02 1.01 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.77 6.76 -51.93 -0.35 0.42 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.08 0.62 6.14 -51.93 -0.32 0.30 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.79 8.01 -51.93 -0.42 0.38 16 38 H 0.05 0.53 6.02 -51.93 -0.31 0.21 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.36 9.04 5.39 -40.82 -0.22 8.82 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 44 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 45 H 0.10 1.32 7.28 -51.93 -0.38 0.94 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -36.23 367.36 -6.22 -42.45 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.66 Total: 3.44 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.93 Total: 2.72 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.50 Total: -58.84 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.05 Total: -13.52 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.23 -6.22 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199798162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.570 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds