Wall clock time and date at job start Fri Apr 10 2020 18:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30013 * 127.33290 * 2 1 4 4 O 1.20658 * 112.29854 * 179.66540 * 3 2 1 5 5 C 1.33488 * 113.15746 * 0.50453 * 4 3 2 6 6 C 1.50706 * 126.83303 * 179.77845 * 5 4 3 7 7 C 1.37361 * 106.34282 * 359.51693 * 5 4 3 8 8 C 1.47399 * 128.56953 * 180.28226 * 7 5 4 9 9 O 1.21610 * 120.00110 * 89.99605 * 8 7 5 10 10 N 1.34774 * 119.99929 * 270.00374 * 8 7 5 11 11 C 1.47517 * 118.76076 * 359.97438 * 10 8 7 12 12 C 1.53566 * 111.02973 * 221.61025 * 11 10 8 13 13 C 1.51537 * 109.58537 * 39.97606 * 12 11 10 14 14 O 1.42154 * 108.75523 * 268.60208 * 13 12 11 15 15 C 1.38014 * 119.43942 * 87.22884 * 14 13 12 16 16 H 1.08998 * 109.46840 * 56.57302 * 15 14 13 17 17 C 1.53004 * 109.46696 * 176.56784 * 15 14 13 18 18 N 1.46494 * 109.46982 * 299.99542 * 17 15 14 19 19 C 1.36943 * 120.00187 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00293 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00058 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00045 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47121 * 89.99633 * 23 21 19 25 25 H 1.48506 * 109.47098 * 209.99679 * 23 21 19 26 26 H 1.48498 * 109.47101 * 329.99577 * 23 21 19 27 27 C 1.45120 * 118.75786 * 179.73062 * 10 8 7 28 28 H 1.09003 * 109.47134 * 270.04198 * 1 2 3 29 29 H 1.08999 * 109.47304 * 30.04267 * 1 2 3 30 30 H 1.08994 * 109.47172 * 150.04349 * 1 2 3 31 31 H 1.08999 * 109.47015 * 269.69040 * 6 5 4 32 32 H 1.09000 * 109.46646 * 29.68192 * 6 5 4 33 33 H 1.09000 * 109.47248 * 149.68910 * 6 5 4 34 34 H 1.09006 * 109.16413 * 342.00558 * 11 10 8 35 35 H 1.08995 * 109.16331 * 101.20624 * 11 10 8 36 36 H 1.09001 * 109.45316 * 160.01268 * 12 11 10 37 37 H 1.08995 * 109.45202 * 279.96075 * 12 11 10 38 38 H 1.08994 * 109.58864 * 28.38001 * 13 12 11 39 39 H 1.09000 * 109.58946 * 148.66931 * 13 12 11 40 40 H 1.08995 * 109.47513 * 60.00051 * 17 15 14 41 41 H 1.09005 * 109.46823 * 179.97438 * 17 15 14 42 42 H 0.97009 * 120.00301 * 0.02562 * 18 17 15 43 43 H 0.97002 * 120.00161 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.46019 * 210.75640 * 27 10 8 45 45 H 1.08995 * 109.45794 * 330.71385 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 0.0065 5 6 3.6494 -0.6007 0.0013 6 6 4.9712 -1.3246 0.0022 7 6 2.3991 -1.1696 0.0009 8 6 2.0400 -2.5992 0.0017 9 8 1.8913 -3.1882 1.0552 10 7 1.8766 -3.2536 -1.1651 11 6 2.0633 -2.5124 -2.4268 12 6 0.9872 -2.8931 -3.4541 13 6 -0.3506 -3.0401 -2.7575 14 8 -0.5127 -4.3954 -2.3606 15 6 -0.0169 -4.8090 -1.1408 16 1 -0.4449 -4.1957 -0.3479 17 6 -0.3896 -6.2748 -0.9094 18 7 -1.8478 -6.4149 -0.9166 19 6 -2.4184 -7.6454 -0.7282 20 1 -1.7934 -8.5125 -0.5738 21 6 -3.8001 -7.7782 -0.7356 22 7 -4.3485 -8.9608 -0.5540 23 14 -4.8812 -6.2785 -1.0032 24 1 -5.1385 -6.1067 -2.4556 25 1 -6.1707 -6.4644 -0.2906 26 1 -4.1937 -5.0724 -0.4762 27 6 1.5289 -4.6621 -1.1329 28 1 -0.3633 0.0008 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8903 -0.5131 31 1 5.2904 -1.4994 -1.0253 32 1 5.7171 -0.7182 0.5161 33 1 4.8621 -2.2795 0.5163 34 1 2.0035 -1.4427 -2.2256 35 1 3.0466 -2.7443 -2.8359 36 1 0.9177 -2.1136 -4.2128 37 1 1.2553 -3.8375 -3.9275 38 1 -0.3776 -2.3962 -1.8785 39 1 -1.1515 -2.7588 -3.4413 40 1 0.0383 -6.8881 -1.7023 41 1 0.0024 -6.6016 0.0538 42 1 -2.4092 -5.6361 -1.0556 43 1 -5.3140 -9.0537 -0.5595 44 1 1.9462 -5.1593 -2.0086 45 1 1.9361 -5.1161 -0.2295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199798162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:11 Heat of formation + Delta-G solvation = -19.080353 kcal Electronic energy + Delta-G solvation = -28789.989378 eV Core-core repulsion = 24810.934398 eV Total energy + Delta-G solvation = -3979.054980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.01136 -41.70779 -39.76449 -37.07865 -36.36426 -35.69133 -34.64885 -34.33138 -33.02153 -30.77029 -29.86492 -29.12676 -27.95518 -26.92692 -25.40678 -23.86005 -22.89442 -22.40520 -21.43533 -20.39673 -19.80475 -19.12562 -18.77070 -17.79645 -17.77321 -17.54526 -16.89296 -16.47621 -16.11813 -16.05264 -15.33156 -15.13340 -14.93202 -14.78981 -14.50006 -14.49381 -14.31553 -14.06656 -13.96907 -13.82463 -13.67645 -13.58714 -13.45583 -13.28059 -12.85309 -12.67736 -12.46056 -12.19819 -12.18347 -12.04221 -11.83466 -11.54373 -11.37079 -11.02405 -10.98667 -10.63670 -10.43242 -9.79568 -9.31314 -8.03632 -5.36478 0.22552 0.74976 1.12524 1.35776 1.39389 1.46585 1.63189 2.02267 2.47562 2.64573 2.92533 3.16561 3.28093 3.40668 3.45899 3.73770 3.83178 3.88097 4.00295 4.03700 4.15949 4.18138 4.23846 4.29752 4.41446 4.46992 4.50904 4.56662 4.58290 4.63855 4.67728 4.71678 4.78668 4.85821 4.97589 5.05134 5.05723 5.07957 5.14080 5.39683 5.73361 6.03979 6.20051 6.66307 6.85248 7.06310 7.12251 7.82288 8.02013 9.17880 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019608 B = 0.003378 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.611066 B = 8286.924008 C = 8546.739698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.049 3.951 3 N -0.371 5.371 4 O 0.097 5.903 5 C 0.038 3.962 6 C -0.080 4.080 7 C -0.273 4.273 8 C 0.596 3.404 9 O -0.564 6.564 10 N -0.590 5.590 11 C 0.105 3.895 12 C -0.157 4.157 13 C 0.061 3.939 14 O -0.394 6.394 15 C 0.099 3.901 16 H 0.029 0.971 17 C 0.165 3.835 18 N -0.754 5.754 19 C -0.235 4.235 20 H 0.061 0.939 21 C -0.062 4.062 22 N -0.982 5.982 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.261 1.261 27 C 0.092 3.908 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.101 0.899 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.366 0.634 43 H 0.259 0.741 44 H 0.113 0.887 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.548 23.252 -6.393 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 N -0.079 5.079 4 O 0.036 5.964 5 C -0.026 4.026 6 C -0.137 4.137 7 C -0.280 4.280 8 C 0.383 3.617 9 O -0.442 6.442 10 N -0.322 5.322 11 C -0.015 4.015 12 C -0.194 4.194 13 C -0.015 4.015 14 O -0.313 6.313 15 C 0.039 3.961 16 H 0.047 0.953 17 C 0.038 3.962 18 N -0.399 5.399 19 C -0.365 4.365 20 H 0.079 0.921 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.784 3.216 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.186 1.186 27 C -0.032 4.032 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.119 0.881 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.131 0.869 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.240 23.909 -5.960 32.531 hybrid contribution -1.228 -0.294 0.463 1.345 sum 20.012 23.615 -5.497 31.438 Atomic orbital electron populations 1.20332 0.84424 1.04749 1.04346 1.24992 0.99232 0.86380 1.00657 1.73622 0.89555 1.23575 1.21110 1.84520 1.21027 1.23026 1.67806 1.25207 0.98031 0.83165 0.96211 1.20726 0.87476 0.98939 1.06575 1.21732 0.94093 0.94292 1.17917 1.17283 0.76166 0.84644 0.83606 1.90846 1.51873 1.68861 1.32628 1.47914 1.67509 1.10240 1.06488 1.22228 1.00717 0.96230 0.82368 1.22430 0.93732 1.04824 0.98463 1.22472 0.98708 0.81670 0.98624 1.86361 1.79903 1.28758 1.36238 1.22041 0.93467 0.94950 0.85623 0.95337 1.20751 0.83789 0.92744 0.98882 1.42565 1.02754 1.06042 1.88564 1.19076 0.90923 0.86728 1.39809 0.92119 1.25461 0.97903 0.99416 1.02599 1.69876 1.10545 1.23967 1.58930 0.85389 0.78113 0.80003 0.78140 1.20108 1.21939 1.18641 1.22350 0.94531 0.81154 1.05182 0.89600 0.88045 0.90292 0.85882 0.86837 0.89407 0.89677 0.88267 0.86549 0.89782 0.93817 0.88053 0.94124 0.94118 0.80122 0.93256 0.86921 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.49 71.24 0.75 -0.69 16 2 C 0.05 1.03 7.34 45.16 0.33 1.36 16 3 N -0.37 -7.87 12.01 -44.79 -0.54 -8.40 16 4 O 0.10 1.73 11.06 77.03 0.85 2.59 16 5 C 0.04 0.58 7.55 25.48 0.19 0.77 16 6 C -0.08 -0.56 10.33 71.24 0.74 0.17 16 7 C -0.27 -5.62 4.16 -18.74 -0.08 -5.69 16 8 C 0.60 14.81 7.42 86.66 0.64 15.45 16 9 O -0.56 -19.20 16.54 -4.06 -0.07 -19.27 16 10 N -0.59 -11.99 2.18 -820.89 -1.79 -13.78 16 11 C 0.11 1.34 6.03 86.38 0.52 1.87 16 12 C -0.16 -2.08 5.79 30.30 0.18 -1.90 16 13 C 0.06 1.27 6.38 71.50 0.46 1.73 16 14 O -0.39 -12.01 9.18 -117.85 -1.08 -13.09 16 15 C 0.10 3.18 2.74 31.38 0.09 3.27 16 16 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 17 C 0.17 6.60 5.95 86.38 0.51 7.12 16 18 N -0.75 -37.72 5.29 -343.46 -1.82 -39.53 16 19 C -0.23 -13.98 10.47 84.03 0.88 -13.10 16 20 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 21 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.98 -64.54 13.97 21.65 0.30 -64.24 16 23 Si 0.96 47.65 27.74 68.60 1.90 49.55 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.26 -12.12 6.52 99.48 0.65 -11.48 16 27 C 0.09 2.22 4.90 87.42 0.43 2.65 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.42 6.76 -2.39 -0.02 1.41 16 31 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.83 8.11 -2.39 -0.02 0.81 16 34 H 0.08 1.05 6.14 -2.38 -0.01 1.03 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.23 8.01 -2.39 -0.02 1.21 16 38 H 0.04 0.93 6.02 -2.39 -0.01 0.92 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.37 17.93 5.39 -92.70 -0.50 17.43 16 43 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 44 H 0.11 2.22 8.11 -2.38 -0.02 2.20 16 45 H 0.09 2.35 7.28 -2.39 -0.02 2.33 16 Total: -1.00 -80.94 367.36 4.31 -76.63 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.45 Total: 19.90 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.10 Total: 9.64 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -3.84 Total: -125.95 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.30 Total: -29.77 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.90 Total: 49.55 kcal Total: -80.94 4.31 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199798162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.548 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds