Wall clock time and date at job start Fri Apr 10 2020 18:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36593 * 126.58384 * 2 1 4 4 C 1.47523 * 125.76577 * 0.03061 * 3 2 1 5 5 O 1.21594 * 120.00451 * 359.71979 * 4 3 2 6 6 N 1.34781 * 119.99871 * 179.71916 * 4 3 2 7 7 C 1.46503 * 120.00049 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.46941 * 179.97438 * 7 6 4 9 9 H 1.09002 * 108.45330 * 57.87787 * 8 7 6 10 10 C 1.47486 * 108.54728 * 175.84817 * 8 7 6 11 11 N 1.50125 * 106.48513 * 178.01130 * 10 8 7 12 12 C 1.36929 * 120.63754 * 111.36996 * 11 10 8 13 13 H 1.07999 * 120.00213 * 155.82262 * 12 11 10 14 14 C 1.38811 * 119.99950 * 335.82695 * 12 11 10 15 15 N 1.31617 * 120.00151 * 340.44346 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 160.44245 * 14 12 11 17 17 H 1.48494 * 109.47175 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.47257 * 300.00362 * 16 14 12 19 19 H 1.48504 * 109.47190 * 59.99826 * 16 14 12 20 20 C 1.43425 * 118.72616 * 291.09709 * 11 10 8 21 21 C 1.55336 * 116.23732 * 89.62503 * 20 11 10 22 22 C 1.55181 * 108.87527 * 319.46297 * 21 20 11 23 23 O 1.39639 * 110.56783 * 322.14149 * 22 21 20 24 24 N 1.34396 * 108.46131 * 179.76586 * 3 2 1 25 25 N 1.28762 * 109.52632 * 0.23061 * 24 3 2 26 26 N 1.34819 * 126.57818 * 180.15711 * 2 1 3 27 27 C 1.46503 * 126.59593 * 359.97164 * 26 2 1 28 28 H 1.09004 * 109.46978 * 90.00739 * 1 2 3 29 29 H 1.09004 * 109.47208 * 210.00479 * 1 2 3 30 30 H 1.09000 * 109.47259 * 330.00848 * 1 2 3 31 31 H 0.97000 * 119.99838 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.47027 * 59.99740 * 7 6 4 33 33 H 1.09002 * 109.46850 * 299.99673 * 7 6 4 34 34 H 1.08995 * 110.11648 * 58.80095 * 10 8 7 35 35 H 1.08997 * 110.15233 * 297.23722 * 10 8 7 36 36 H 0.97003 * 120.00213 * 179.97438 * 15 14 12 37 37 H 1.08997 * 108.12625 * 211.38277 * 20 11 10 38 38 H 1.08999 * 108.12979 * 328.08579 * 20 11 10 39 39 H 1.08998 * 109.56591 * 79.28523 * 21 20 11 40 40 H 1.09002 * 109.56988 * 199.64262 * 21 20 11 41 41 H 1.09004 * 109.25672 * 82.42923 * 22 21 20 42 42 H 1.09006 * 109.25717 * 201.89719 * 22 21 20 43 43 H 1.08998 * 109.47152 * 270.27266 * 27 26 2 44 44 H 1.09005 * 109.46583 * 30.27415 * 27 26 2 45 45 H 1.09002 * 109.46958 * 150.27328 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5026 0.0006 5 8 0.6860 2.7628 -0.0039 6 7 2.7817 3.4987 0.0063 7 6 2.3376 4.8948 0.0075 8 6 3.5575 5.8180 0.0149 9 1 4.1682 5.5898 -0.8587 10 6 3.0905 7.2134 -0.0853 11 7 4.3161 8.0782 -0.0243 12 6 4.7290 8.7819 -1.1240 13 1 5.3337 9.6684 -1.0021 14 6 4.3701 8.3560 -2.3955 15 7 3.9817 7.1133 -2.5880 16 14 4.4385 9.5465 -3.8333 17 1 4.0086 8.8509 -5.0728 18 1 3.5324 10.6933 -3.5700 19 1 5.8284 10.0422 -3.9999 20 6 5.0428 8.1580 1.2096 21 6 6.1687 7.1072 1.4126 22 6 5.6739 5.7334 0.8872 23 8 4.3221 5.5518 1.1862 24 7 3.5984 0.6788 0.0052 25 7 3.6299 -0.6084 0.0036 26 7 2.3104 -1.0826 -0.0030 27 6 1.8863 -2.4850 -0.0062 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 3.7293 3.2912 0.0096 32 1 1.7342 5.0833 0.8955 33 1 1.7413 5.0871 -0.8845 34 1 2.4275 7.4475 0.7476 35 1 2.5716 7.3687 -1.0311 36 1 3.7307 6.8157 -3.4765 37 1 5.4888 9.1502 1.2770 38 1 4.3322 8.0517 2.0292 39 1 7.0565 7.4119 0.8585 40 1 6.4074 7.0281 2.4732 41 1 5.8123 5.6906 -0.1931 42 1 6.2550 4.9389 1.3556 43 1 1.7769 -2.8338 1.0206 44 1 0.9314 -2.5745 -0.5242 45 1 2.6352 -3.0898 -0.5176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073561732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:06 Heat of formation + Delta-G solvation = 24.958384 kcal Electronic energy + Delta-G solvation = -28235.671849 eV Core-core repulsion = 24290.819284 eV Total energy + Delta-G solvation = -3944.852566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.30575 -40.92110 -39.99996 -36.78526 -36.16926 -35.72121 -33.83390 -33.33562 -32.87035 -30.43180 -29.16631 -28.31811 -27.06249 -27.03785 -24.79077 -23.81244 -22.41910 -21.98276 -21.39284 -21.25382 -19.14425 -18.82568 -17.71089 -17.42110 -17.11404 -16.91806 -16.56783 -16.23119 -15.83195 -15.80460 -15.52281 -15.24086 -14.83368 -14.63184 -14.29982 -14.18440 -14.13138 -13.94637 -13.78597 -13.54415 -13.29237 -13.26397 -12.97464 -12.92599 -12.59125 -12.50005 -12.30222 -12.17914 -11.91387 -11.77030 -11.37803 -11.21128 -11.15729 -11.11738 -10.54178 -10.33810 -10.25907 -9.96047 -8.70036 -7.87080 -5.27774 0.10208 0.58582 1.13938 1.49573 1.52801 1.58265 2.16625 2.21969 2.54210 3.11788 3.18610 3.29659 3.45105 3.53454 3.63253 3.74920 4.14763 4.27792 4.34633 4.36903 4.42623 4.44545 4.56855 4.62158 4.66380 4.68448 4.75773 4.79088 4.80225 4.82923 4.95387 5.07858 5.11362 5.18278 5.19580 5.34233 5.39445 5.42823 5.51186 5.54530 5.69893 6.37580 6.43912 6.52589 6.88067 7.11791 7.13823 7.85308 8.38304 9.18710 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003149 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.176196 B = 8889.245833 C = 9482.358325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.134 3.866 3 C -0.133 4.133 4 C 0.600 3.400 5 O -0.563 6.563 6 N -0.699 5.699 7 C 0.134 3.866 8 C 0.078 3.922 9 H 0.080 0.920 10 C 0.147 3.853 11 N -0.602 5.602 12 C -0.264 4.264 13 H 0.064 0.936 14 C -0.037 4.037 15 N -0.917 5.917 16 Si 0.960 3.040 17 H -0.295 1.295 18 H -0.284 1.284 19 H -0.282 1.282 20 C 0.154 3.846 21 C -0.164 4.164 22 C 0.068 3.932 23 O -0.368 6.368 24 N -0.228 5.228 25 N -0.093 5.093 26 N -0.353 5.353 27 C 0.072 3.928 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.408 0.592 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -19.357 6.024 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.006 4.006 3 C -0.273 4.273 4 C 0.385 3.615 5 O -0.442 6.442 6 N -0.348 5.348 7 C 0.009 3.991 8 C 0.019 3.981 9 H 0.098 0.902 10 C 0.022 3.978 11 N -0.324 5.324 12 C -0.394 4.394 13 H 0.081 0.919 14 C -0.234 4.234 15 N -0.563 5.563 16 Si 0.789 3.211 17 H -0.221 1.221 18 H -0.210 1.210 19 H -0.208 1.208 20 C 0.026 3.974 21 C -0.205 4.205 22 C -0.009 4.009 23 O -0.286 6.286 24 N -0.101 5.101 25 N -0.073 5.073 26 N -0.139 5.139 27 C -0.067 4.067 28 H 0.123 0.877 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.243 0.757 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.147 0.853 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.046 -19.705 6.060 21.484 hybrid contribution 0.054 0.937 -1.202 1.525 sum -5.992 -18.768 4.858 20.292 Atomic orbital electron populations 1.20837 0.81999 1.06399 1.05746 1.22352 0.97516 0.85609 0.95130 1.21250 0.89697 0.95489 1.20859 1.16961 0.85328 0.83167 0.76033 1.90712 1.16380 1.84150 1.52971 1.45693 1.10355 1.05790 1.72936 1.21490 0.96662 0.79220 1.01679 1.21898 0.93054 0.95364 0.87799 0.90204 1.20788 0.88492 0.88727 0.99788 1.44243 1.25389 1.53718 1.09002 1.19375 1.30636 1.04174 0.85245 0.91858 1.25490 1.01961 0.96791 0.99111 1.70016 1.50024 1.14626 1.21627 0.85461 0.77701 0.78824 0.79066 1.22077 1.21025 1.20804 1.20488 0.92977 0.96004 0.87889 1.23499 0.99510 0.96773 1.00702 1.22375 0.82947 0.96683 0.98932 1.87506 1.17633 1.88711 1.34778 1.74583 1.19980 1.04983 1.10530 1.81866 0.98079 1.02962 1.24408 1.50631 1.05136 1.09400 1.48728 1.22739 1.04197 0.73001 1.06714 0.87679 0.86614 0.88858 0.75666 0.91422 0.91172 0.95282 0.90112 0.94013 0.94909 0.94528 0.92789 0.90341 0.94708 0.90219 0.87153 0.85338 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.38 71.24 0.67 -0.61 16 2 C 0.13 2.93 7.02 41.72 0.29 3.22 16 3 C -0.13 -4.07 6.99 40.82 0.29 -3.78 16 4 C 0.60 20.99 7.82 86.69 0.68 21.67 16 5 O -0.56 -20.84 14.72 -4.01 -0.06 -20.90 16 6 N -0.70 -25.48 5.43 -466.27 -2.53 -28.01 16 7 C 0.13 5.20 5.24 86.38 0.45 5.66 16 8 C 0.08 3.33 1.95 28.87 0.06 3.39 16 9 H 0.08 3.92 5.27 -2.39 -0.01 3.91 16 10 C 0.15 6.85 4.75 83.95 0.40 7.25 16 11 N -0.60 -29.59 2.60 -705.04 -1.84 -31.42 16 12 C -0.26 -14.10 9.62 84.03 0.81 -13.29 16 13 H 0.06 3.37 7.88 -2.91 -0.02 3.34 16 14 C -0.04 -1.97 4.91 84.86 0.42 -1.56 16 15 N -0.92 -49.75 9.59 21.65 0.21 -49.54 16 16 Si 0.96 43.87 29.60 68.60 2.03 45.90 16 17 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 C 0.15 6.57 5.33 87.75 0.47 7.03 16 21 C -0.16 -6.12 6.75 32.15 0.22 -5.90 16 22 C 0.07 2.65 6.38 72.73 0.46 3.12 16 23 O -0.37 -14.96 9.54 -137.18 -1.31 -16.27 16 24 N -0.23 -7.38 12.04 -50.00 -0.60 -7.98 16 25 N -0.09 -2.59 13.79 37.02 0.51 -2.08 16 26 N -0.35 -6.66 4.03 -355.08 -1.43 -8.09 16 27 C 0.07 0.40 11.17 127.77 1.43 1.82 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 0.63 7.84 -2.39 -0.02 0.61 16 30 H 0.09 1.80 6.43 -2.39 -0.02 1.79 16 31 H 0.41 14.87 8.01 -92.71 -0.74 14.12 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 4.15 6.02 -2.39 -0.01 4.14 16 36 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.03 1.37 7.96 -2.39 -0.02 1.35 16 38 H 0.04 1.50 7.97 -2.39 -0.02 1.48 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.03 1.56 6.66 -2.38 -0.02 1.54 16 42 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 43 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.13 -0.07 7.78 -2.38 -0.02 -0.09 16 45 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -68.71 363.36 1.89 -66.82 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.28 Total: 23.57 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 6.63 Total: 28.01 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.68 Total: -127.13 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.37 Total: -37.17 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.71 1.89 -66.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073561732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.781 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds