Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99948 * 2 1 4 4 H 1.09009 * 110.77620 * 26.76645 * 3 2 1 5 5 C 1.54330 * 110.85197 * 263.69553 * 3 2 1 6 6 N 1.47030 * 107.26209 * 219.67089 * 5 3 2 7 7 C 1.36932 * 125.64458 * 178.85029 * 6 5 3 8 8 H 1.08003 * 120.00009 * 174.49149 * 7 6 5 9 9 C 1.38814 * 120.00336 * 354.75853 * 7 6 5 10 10 N 1.31622 * 119.99781 * 6.72585 * 9 7 6 11 11 Si 1.86802 * 120.00233 * 186.72304 * 9 7 6 12 12 H 1.48501 * 109.46708 * 94.98760 * 11 9 7 13 13 H 1.48498 * 109.47189 * 214.99076 * 11 9 7 14 14 H 1.48498 * 109.46915 * 334.98827 * 11 9 7 15 15 C 1.47424 * 108.70135 * 358.58757 * 6 5 3 16 16 C 1.54899 * 104.83505 * 24.35431 * 15 6 5 17 17 H 1.09001 * 111.00605 * 81.06175 * 16 15 6 18 18 N 1.46506 * 111.00606 * 204.87948 * 16 15 6 19 19 C 1.34775 * 119.99646 * 273.54882 * 18 16 15 20 20 O 1.21601 * 120.00128 * 359.97438 * 19 18 16 21 21 C 1.47526 * 119.99853 * 180.02562 * 19 18 16 22 22 C 1.36594 * 125.77239 * 180.02562 * 21 19 18 23 23 N 1.34807 * 106.83931 * 179.97438 * 22 21 19 24 24 C 1.46508 * 126.59352 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47172 * 275.00329 * 24 23 22 26 26 C 1.52997 * 109.46975 * 35.00222 * 24 23 22 27 27 N 1.40208 * 106.81318 * 0.02562 * 23 22 21 28 28 N 1.28758 * 108.36579 * 359.74553 * 27 23 22 29 29 H 1.09003 * 109.47112 * 59.99532 * 1 2 3 30 30 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47234 * 300.00133 * 1 2 3 32 32 H 1.08995 * 109.99164 * 100.20357 * 5 3 2 33 33 H 1.08994 * 109.78342 * 339.02695 * 5 3 2 34 34 H 0.96998 * 119.99807 * 179.97438 * 10 9 7 35 35 H 1.09002 * 110.36479 * 143.19790 * 15 6 5 36 36 H 1.09003 * 110.36475 * 265.40446 * 15 6 5 37 37 H 0.96995 * 120.00125 * 93.54314 * 18 16 15 38 38 H 1.08003 * 126.57698 * 359.97128 * 22 21 19 39 39 H 1.08992 * 109.47189 * 154.99943 * 24 23 22 40 40 H 1.08998 * 109.46760 * 300.00100 * 25 24 23 41 41 H 1.09006 * 109.47229 * 59.99710 * 25 24 23 42 42 H 1.08998 * 109.47300 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47446 * 59.99675 * 26 24 23 44 44 H 1.08998 * 109.47146 * 180.02562 * 26 24 23 45 45 H 1.09005 * 109.47516 * 300.00058 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3362 2.0288 0.4590 5 6 2.3784 1.7429 -1.4335 6 7 3.6685 2.4440 -1.3580 7 6 4.3540 2.9706 -2.4200 8 1 5.2523 3.5459 -2.2513 9 6 3.8912 2.7697 -3.7132 10 7 2.7270 2.1889 -3.9128 11 14 4.9206 3.3236 -5.1703 12 1 5.7345 2.1835 -5.6632 13 1 4.0261 3.7994 -6.2560 14 1 5.8195 4.4283 -4.7498 15 6 4.0988 2.4918 0.0513 16 6 3.3817 1.2958 0.7256 17 1 3.9158 0.3642 0.5389 18 7 3.2175 1.5247 2.1634 19 6 4.2052 1.1879 3.0163 20 8 5.2323 0.6937 2.5927 21 6 4.0397 1.4178 4.4641 22 6 4.9599 1.1233 5.4297 23 7 4.4186 1.4879 6.6093 24 6 5.0386 1.3624 7.9307 25 6 4.7860 -0.0427 8.4812 26 6 6.5453 1.6002 7.8118 27 7 3.1478 2.0093 6.3284 28 7 2.9601 1.9572 5.0556 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6144 2.4138 -1.8261 33 1 2.4699 0.8663 -2.0747 34 1 2.4035 2.0489 -4.8164 35 1 5.1802 2.3746 0.1219 36 1 3.7888 3.4303 0.5110 37 1 2.3981 1.9186 2.5013 38 1 5.9342 0.6828 5.2773 39 1 4.6065 2.1004 8.6064 40 1 3.7126 -0.2121 8.5658 41 1 5.2182 -0.7808 7.8054 42 1 5.2476 -0.1363 9.4641 43 1 6.7253 2.6012 7.4196 44 1 7.0066 1.5064 8.7949 45 1 6.9775 0.8622 7.1361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082280199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = 48.124257 kcal Electronic energy + Delta-G solvation = -27489.531361 eV Core-core repulsion = 23545.683343 eV Total energy + Delta-G solvation = -3943.848018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.39614 -39.47041 -37.99509 -36.83985 -35.83270 -34.00723 -31.93035 -31.68796 -30.85795 -28.72246 -28.01165 -27.14252 -26.05036 -24.76836 -24.05636 -23.25464 -21.11214 -20.78130 -20.43372 -19.86589 -18.26838 -17.00461 -16.51403 -16.25800 -16.17358 -15.51936 -15.22265 -14.98819 -14.72385 -14.51524 -14.37670 -14.15386 -13.84891 -13.65331 -13.22646 -13.17238 -12.94503 -12.72008 -12.41670 -12.23738 -12.14416 -11.83180 -11.80714 -11.52304 -11.37522 -11.14064 -10.97355 -10.77401 -10.70640 -10.58935 -10.13451 -9.98387 -9.91385 -9.73537 -9.42795 -9.04317 -8.70293 -8.51860 -6.83693 -5.70312 -3.03808 0.98156 1.67477 1.74859 3.27480 3.41423 3.44395 3.49353 3.51006 3.84370 4.08139 4.15775 4.19991 4.35306 4.53053 4.60466 4.75766 4.83341 4.90103 5.01056 5.03237 5.17891 5.22289 5.44555 5.47129 5.47792 5.52892 5.65309 5.66773 5.71088 5.78760 5.91594 5.98864 6.11961 6.16572 6.23188 6.58074 6.69253 6.90847 7.30656 7.52710 7.62798 7.77096 7.88846 7.92226 8.24498 8.38874 9.21588 9.81996 10.45998 11.41569 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.002745 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.132845 B =10196.612807 C =11228.638405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.065 0.935 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.134 3.866 17 H 0.106 0.894 18 N -0.699 5.699 19 C 0.603 3.397 20 O -0.536 6.536 21 C -0.095 4.095 22 C 0.093 3.907 23 N -0.358 5.358 24 C 0.144 3.856 25 C -0.167 4.167 26 C -0.170 4.170 27 N -0.069 5.069 28 N -0.205 5.205 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.404 0.596 38 H 0.202 0.798 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -3.578 25.552 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.082 0.918 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.029 3.971 17 H 0.124 0.876 18 N -0.348 5.348 19 C 0.386 3.614 20 O -0.412 6.412 21 C -0.234 4.234 22 C -0.064 4.064 23 N -0.144 5.144 24 C 0.043 3.957 25 C -0.225 4.225 26 C -0.228 4.228 27 N -0.048 5.048 28 N -0.079 5.079 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.239 0.761 38 H 0.219 0.781 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.378 -3.474 25.622 25.893 hybrid contribution 0.725 0.266 -0.864 1.159 sum 2.103 -3.208 24.758 25.053 Atomic orbital electron populations 1.22715 0.81718 1.02032 0.99818 1.87902 1.19114 1.27516 1.95038 1.23829 0.92898 0.84164 0.99418 0.91752 1.21576 0.88096 0.97375 0.89041 1.44260 1.20971 1.66801 1.00786 1.19073 1.05676 1.26811 0.84029 0.90130 1.24838 0.97309 1.00807 0.97337 1.69954 1.18394 1.48357 1.20056 0.86085 0.79254 0.78000 0.82356 1.21520 1.21808 1.20601 1.21836 0.97908 0.93804 0.86139 1.22438 0.96630 1.01054 0.77013 0.87581 1.45739 1.19085 1.62838 1.07177 1.16727 0.83691 0.78139 0.82806 1.90826 1.27986 1.44750 1.77662 1.21568 0.93385 1.12156 0.96336 1.23265 1.00675 0.97947 0.84500 1.50738 1.13867 1.42289 1.07468 1.21628 0.94117 1.00351 0.79639 1.22264 1.03646 0.94363 1.02227 1.22276 0.92330 1.03697 1.04495 1.81964 0.95812 1.18889 1.08184 1.74626 1.21575 1.11109 1.00587 0.93655 0.90277 0.94708 0.93526 0.91733 0.93674 0.92932 0.95884 0.76115 0.78106 0.86843 0.91213 0.91371 0.89702 0.91007 0.89296 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.21 10.44 -35.23 -0.37 -7.58 16 3 C 0.06 1.10 3.06 -24.89 -0.08 1.03 16 4 H 0.06 1.14 7.69 -51.92 -0.40 0.74 16 5 C 0.16 4.08 5.17 -3.06 -0.02 4.07 16 6 N -0.60 -15.77 3.39 -170.07 -0.58 -16.35 16 7 C -0.23 -6.48 10.27 -15.06 -0.15 -6.63 16 8 H 0.08 2.22 7.84 -52.48 -0.41 1.80 16 9 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 10 N -0.92 -27.27 10.36 55.49 0.57 -26.70 16 11 Si 0.91 22.42 29.56 -169.99 -5.02 17.40 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 C 0.13 2.89 6.92 -2.53 -0.02 2.87 16 16 C 0.13 2.63 3.04 -65.78 -0.20 2.43 16 17 H 0.11 2.31 7.73 -51.93 -0.40 1.91 16 18 N -0.70 -11.56 5.23 -52.77 -0.28 -11.83 16 19 C 0.60 9.96 7.82 -12.47 -0.10 9.86 16 20 O -0.54 -10.25 16.61 5.28 0.09 -10.16 16 21 C -0.09 -1.31 6.99 -83.55 -0.58 -1.89 16 22 C 0.09 0.97 10.40 -16.84 -0.18 0.80 16 23 N -0.36 -3.33 3.54 -54.56 -0.19 -3.52 16 24 C 0.14 0.73 3.96 -67.93 -0.27 0.46 16 25 C -0.17 -0.67 9.52 37.16 0.35 -0.31 16 26 C -0.17 -0.56 8.85 37.16 0.33 -0.24 16 27 N -0.07 -0.87 13.78 60.35 0.83 -0.03 16 28 N -0.21 -2.89 12.04 32.85 0.40 -2.50 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.45 8.11 -51.93 -0.42 0.02 16 32 H 0.05 1.24 7.62 -51.93 -0.40 0.85 16 33 H 0.06 1.81 7.20 -51.93 -0.37 1.43 16 34 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 5.98 8.20 -40.82 -0.33 5.64 16 38 H 0.20 1.56 7.34 -52.48 -0.39 1.17 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.07 0.23 7.23 -51.93 -0.38 -0.14 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -34.75 377.27 -5.63 -40.38 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.86 Total: 1.46 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 0.09 Total: 13.75 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.76 Total: -60.93 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.28 Total: -17.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.75 -5.63 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082280199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.507 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds