Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99948 * 2 1 4 4 H 1.09009 * 110.77620 * 26.76645 * 3 2 1 5 5 C 1.54330 * 110.85197 * 263.69553 * 3 2 1 6 6 N 1.47030 * 107.26209 * 219.67089 * 5 3 2 7 7 C 1.36932 * 125.64458 * 178.85029 * 6 5 3 8 8 H 1.08003 * 120.00009 * 174.49149 * 7 6 5 9 9 C 1.38814 * 120.00336 * 354.75853 * 7 6 5 10 10 N 1.31622 * 119.99781 * 6.72585 * 9 7 6 11 11 Si 1.86802 * 120.00233 * 186.72304 * 9 7 6 12 12 H 1.48501 * 109.46708 * 94.98760 * 11 9 7 13 13 H 1.48498 * 109.47189 * 214.99076 * 11 9 7 14 14 H 1.48498 * 109.46915 * 334.98827 * 11 9 7 15 15 C 1.47424 * 108.70135 * 358.58757 * 6 5 3 16 16 C 1.54899 * 104.83505 * 24.35431 * 15 6 5 17 17 H 1.09001 * 111.00605 * 81.06175 * 16 15 6 18 18 N 1.46506 * 111.00606 * 204.87948 * 16 15 6 19 19 C 1.34775 * 119.99646 * 273.54882 * 18 16 15 20 20 O 1.21601 * 120.00128 * 359.97438 * 19 18 16 21 21 C 1.47526 * 119.99853 * 180.02562 * 19 18 16 22 22 C 1.36594 * 125.77239 * 180.02562 * 21 19 18 23 23 N 1.34807 * 106.83931 * 179.97438 * 22 21 19 24 24 C 1.46508 * 126.59352 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47172 * 275.00329 * 24 23 22 26 26 C 1.52997 * 109.46975 * 35.00222 * 24 23 22 27 27 N 1.40208 * 106.81318 * 0.02562 * 23 22 21 28 28 N 1.28758 * 108.36579 * 359.74553 * 27 23 22 29 29 H 1.09003 * 109.47112 * 59.99532 * 1 2 3 30 30 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47234 * 300.00133 * 1 2 3 32 32 H 1.08995 * 109.99164 * 100.20357 * 5 3 2 33 33 H 1.08994 * 109.78342 * 339.02695 * 5 3 2 34 34 H 0.96998 * 119.99807 * 179.97438 * 10 9 7 35 35 H 1.09002 * 110.36479 * 143.19790 * 15 6 5 36 36 H 1.09003 * 110.36475 * 265.40446 * 15 6 5 37 37 H 0.96995 * 120.00125 * 93.54314 * 18 16 15 38 38 H 1.08003 * 126.57698 * 359.97128 * 22 21 19 39 39 H 1.08992 * 109.47189 * 154.99943 * 24 23 22 40 40 H 1.08998 * 109.46760 * 300.00100 * 25 24 23 41 41 H 1.09006 * 109.47229 * 59.99710 * 25 24 23 42 42 H 1.08998 * 109.47300 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47446 * 59.99675 * 26 24 23 44 44 H 1.08998 * 109.47146 * 180.02562 * 26 24 23 45 45 H 1.09005 * 109.47516 * 300.00058 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3362 2.0288 0.4590 5 6 2.3784 1.7429 -1.4335 6 7 3.6685 2.4440 -1.3580 7 6 4.3540 2.9706 -2.4200 8 1 5.2523 3.5459 -2.2513 9 6 3.8912 2.7697 -3.7132 10 7 2.7270 2.1889 -3.9128 11 14 4.9206 3.3236 -5.1703 12 1 5.7345 2.1835 -5.6632 13 1 4.0261 3.7994 -6.2560 14 1 5.8195 4.4283 -4.7498 15 6 4.0988 2.4918 0.0513 16 6 3.3817 1.2958 0.7256 17 1 3.9158 0.3642 0.5389 18 7 3.2175 1.5247 2.1634 19 6 4.2052 1.1879 3.0163 20 8 5.2323 0.6937 2.5927 21 6 4.0397 1.4178 4.4641 22 6 4.9599 1.1233 5.4297 23 7 4.4186 1.4879 6.6093 24 6 5.0386 1.3624 7.9307 25 6 4.7860 -0.0427 8.4812 26 6 6.5453 1.6002 7.8118 27 7 3.1478 2.0093 6.3284 28 7 2.9601 1.9572 5.0556 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6144 2.4138 -1.8261 33 1 2.4699 0.8663 -2.0747 34 1 2.4035 2.0489 -4.8164 35 1 5.1802 2.3746 0.1219 36 1 3.7888 3.4303 0.5110 37 1 2.3981 1.9186 2.5013 38 1 5.9342 0.6828 5.2773 39 1 4.6065 2.1004 8.6064 40 1 3.7126 -0.2121 8.5658 41 1 5.2182 -0.7808 7.8054 42 1 5.2476 -0.1363 9.4641 43 1 6.7253 2.6012 7.4196 44 1 7.0066 1.5064 8.7949 45 1 6.9775 0.8622 7.1361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082280199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = 21.536618 kcal Electronic energy + Delta-G solvation = -27490.684288 eV Core-core repulsion = 23545.683343 eV Total energy + Delta-G solvation = -3945.000945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.29795 -40.93303 -39.52017 -37.50581 -37.40963 -35.63761 -33.72644 -32.50774 -31.95041 -30.49146 -28.88973 -28.27452 -27.52475 -26.31129 -25.06646 -24.46694 -22.36436 -22.07377 -21.83035 -21.28794 -19.44594 -18.77191 -17.97147 -17.33097 -17.16506 -17.05571 -16.56643 -15.95426 -15.89164 -15.82420 -15.67411 -15.39830 -15.24701 -15.02345 -14.49934 -14.22349 -14.03384 -13.63072 -13.58424 -13.32487 -13.20646 -13.17566 -12.97336 -12.76752 -12.59024 -12.53179 -12.35809 -12.31017 -12.06135 -12.04497 -11.86872 -11.64378 -11.33061 -11.32557 -10.74871 -10.60650 -10.41477 -10.09414 -8.95952 -7.87530 -5.24488 0.13435 0.58643 1.05293 1.46582 1.49778 1.58153 1.96657 2.19841 2.47435 2.76466 3.11983 3.31264 3.33988 3.50928 3.68327 3.81003 3.85727 3.91811 3.93953 4.01811 4.09212 4.22442 4.36090 4.45046 4.58580 4.60317 4.62930 4.64951 4.66527 4.78428 4.84609 4.87029 4.90952 4.97636 5.17777 5.22055 5.31340 5.35585 5.46000 5.50269 5.66050 6.14044 6.30194 6.37645 6.88174 7.04917 7.10006 7.70210 8.33760 9.22807 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.002745 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.132845 B =10196.612807 C =11228.638405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.075 3.925 4 H 0.092 0.908 5 C 0.175 3.825 6 N -0.621 5.621 7 C -0.247 4.247 8 H 0.084 0.916 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.981 3.019 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.152 3.848 17 H 0.083 0.917 18 N -0.692 5.692 19 C 0.606 3.394 20 O -0.566 6.566 21 C -0.120 4.120 22 C 0.111 3.889 23 N -0.342 5.342 24 C 0.134 3.866 25 C -0.163 4.163 26 C -0.167 4.167 27 N -0.085 5.085 28 N -0.223 5.223 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.023 0.977 34 H 0.249 0.751 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.415 0.585 38 H 0.229 0.771 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -3.535 28.151 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.016 3.984 4 H 0.110 0.890 5 C 0.049 3.951 6 N -0.349 5.349 7 C -0.375 4.375 8 H 0.102 0.898 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.809 3.191 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.191 1.191 15 C 0.005 3.995 16 C 0.046 3.954 17 H 0.102 0.898 18 N -0.342 5.342 19 C 0.392 3.608 20 O -0.444 6.444 21 C -0.260 4.260 22 C -0.047 4.047 23 N -0.127 5.127 24 C 0.035 3.965 25 C -0.221 4.221 26 C -0.225 4.225 27 N -0.065 5.065 28 N -0.097 5.097 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.252 0.748 38 H 0.246 0.754 39 H 0.142 0.858 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.176 -3.416 28.301 28.589 hybrid contribution 0.494 0.220 -1.521 1.615 sum 2.670 -3.196 26.780 27.102 Atomic orbital electron populations 1.22996 0.79341 1.03964 1.00700 1.87882 1.21744 1.26823 1.94931 1.23478 0.93558 0.85295 0.96048 0.89045 1.21294 0.87063 0.94969 0.91728 1.44524 1.21592 1.66682 1.02077 1.19451 1.05989 1.26955 0.85117 0.89778 1.25707 0.98460 1.01366 0.99991 1.70168 1.19792 1.49485 1.20178 0.85026 0.77676 0.77780 0.78637 1.21464 1.21817 1.19098 1.21910 0.97630 0.95383 0.84536 1.21912 0.95882 0.98787 0.78810 0.89842 1.45530 1.19840 1.63127 1.05681 1.17026 0.82878 0.77066 0.83875 1.90805 1.29068 1.46077 1.78491 1.21272 0.94872 1.14672 0.95178 1.23622 1.00832 0.96244 0.84021 1.51101 1.12695 1.40306 1.08632 1.22133 0.95179 1.01497 0.77722 1.22270 1.02923 0.93280 1.03605 1.22313 0.90761 1.03255 1.06149 1.81879 0.97505 1.19600 1.07537 1.74594 1.22102 1.11746 1.01243 0.94419 0.87951 0.92088 0.96156 0.95841 0.94159 0.93884 0.94570 0.74839 0.75431 0.85820 0.92686 0.91556 0.86918 0.91877 0.86706 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.85 113.37 1.23 1.96 16 2 O -0.40 -15.01 10.44 -148.98 -1.55 -16.57 16 3 C 0.08 2.99 3.06 31.79 0.10 3.08 16 4 H 0.09 3.13 7.69 -2.38 -0.02 3.11 16 5 C 0.18 9.03 5.17 86.73 0.45 9.48 16 6 N -0.62 -33.56 3.39 -691.98 -2.35 -35.91 16 7 C -0.25 -14.33 10.27 84.03 0.86 -13.47 16 8 H 0.08 4.68 7.84 -2.91 -0.02 4.66 16 9 C -0.06 -3.61 5.48 84.86 0.46 -3.15 16 10 N -0.95 -58.05 10.36 21.65 0.22 -57.83 16 11 Si 0.98 46.79 29.56 68.60 2.03 48.81 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 C 0.13 5.92 6.92 86.85 0.60 6.52 16 16 C 0.15 6.04 3.04 46.38 0.14 6.18 16 17 H 0.08 3.73 7.73 -2.39 -0.02 3.71 16 18 N -0.69 -22.50 5.23 -439.12 -2.30 -24.80 16 19 C 0.61 19.74 7.82 86.69 0.68 20.42 16 20 O -0.57 -21.59 16.61 -4.03 -0.07 -21.66 16 21 C -0.12 -3.19 6.99 40.82 0.29 -2.90 16 22 C 0.11 2.11 10.40 83.85 0.87 2.98 16 23 N -0.34 -5.65 3.54 -326.54 -1.16 -6.81 16 24 C 0.13 0.98 3.96 44.99 0.18 1.16 16 25 C -0.16 -0.84 9.52 71.98 0.69 -0.16 16 26 C -0.17 -0.56 8.85 71.98 0.64 0.07 16 27 N -0.09 -2.03 13.78 37.02 0.51 -1.52 16 28 N -0.22 -6.07 12.04 -49.99 -0.60 -6.67 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.02 1.13 7.62 -2.39 -0.02 1.11 16 33 H 0.02 1.38 7.20 -2.39 -0.02 1.37 16 34 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.41 11.80 8.20 -92.71 -0.76 11.04 16 38 H 0.23 2.92 7.34 -2.91 -0.02 2.90 16 39 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.08 0.23 7.23 -2.38 -0.02 0.21 16 Total: -1.00 -78.07 377.27 2.16 -75.91 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.24 Total: 14.86 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 7.18 Total: 32.18 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -5.67 Total: -133.54 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.62 Total: -38.22 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -78.07 2.16 -75.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082280199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.445 kcal (2) G-P(sol) polarization free energy of solvation -78.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds