Wall clock time and date at job start Fri Apr 10 2020 18:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46874 * 2 1 4 4 N 1.46499 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59249 * 124.99808 * 4 3 2 6 6 C 1.36598 * 106.84098 * 180.02562 * 5 4 3 7 7 C 1.47522 * 125.76991 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99493 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99730 * 179.97438 * 9 7 6 11 11 H 1.09007 * 110.88395 * 37.43411 * 10 9 7 12 12 C 1.54910 * 111.00763 * 273.54930 * 10 9 7 13 13 N 1.47423 * 104.82934 * 204.87761 * 12 10 9 14 14 C 1.36943 * 125.64463 * 204.09154 * 13 12 10 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27811 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48496 * 109.47031 * 59.99836 * 18 16 14 20 20 H 1.48497 * 109.47267 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47169 * 300.00118 * 18 16 14 22 22 C 1.47021 * 108.70520 * 24.35776 * 13 12 10 23 23 C 1.54331 * 107.26526 * 358.58242 * 22 13 12 24 24 H 1.08999 * 110.51339 * 96.45584 * 23 22 13 25 25 O 1.42902 * 110.84850 * 219.67676 * 23 22 13 26 26 C 1.42905 * 114.00029 * 263.69061 * 25 23 22 27 27 N 1.34400 * 108.45451 * 0.24653 * 6 5 4 28 28 N 1.28763 * 109.52662 * 359.58814 * 27 6 5 29 29 H 1.09000 * 109.47106 * 299.99686 * 1 2 3 30 30 H 1.09001 * 109.47061 * 59.99593 * 1 2 3 31 31 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47106 * 240.00314 * 2 1 3 33 33 H 1.08994 * 109.47111 * 120.00041 * 2 1 3 34 34 H 1.09000 * 109.46998 * 60.00248 * 3 2 1 35 35 H 1.08994 * 109.47285 * 299.99934 * 3 2 1 36 36 H 1.08003 * 126.57975 * 0.02562 * 5 4 3 37 37 H 0.96993 * 120.00181 * 0.02562 * 9 7 6 38 38 H 1.09000 * 110.36626 * 86.03818 * 12 10 9 39 39 H 1.08995 * 110.45617 * 323.76469 * 12 10 9 40 40 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.88257 * 118.13163 * 22 13 12 42 42 H 1.09008 * 109.88006 * 239.29375 * 22 13 12 43 43 H 1.09000 * 109.46774 * 59.99903 * 26 25 23 44 44 H 1.08992 * 109.47268 * 180.02562 * 26 25 23 45 45 H 1.09004 * 109.47055 * 300.00499 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0633 -0.8858 6 6 5.5945 1.7981 -0.5074 7 6 6.8109 2.2764 -1.1915 8 8 6.7163 2.9718 -2.1845 9 7 8.0269 1.9425 -0.7158 10 6 9.2349 2.4170 -1.3955 11 1 9.0981 3.4327 -1.7670 12 6 9.6411 1.4566 -2.5410 13 7 11.0903 1.6656 -2.7125 14 6 11.8029 1.4163 -3.8551 15 1 11.3014 1.0323 -4.7312 16 6 13.1706 1.6511 -3.8851 17 7 13.7818 2.1185 -2.8173 18 14 14.1439 1.3038 -5.4412 19 1 13.6129 2.1332 -6.5527 20 1 15.5735 1.6361 -5.2155 21 1 14.0189 -0.1336 -5.7928 22 6 11.6450 2.1799 -1.4518 23 6 10.4707 2.3283 -0.4615 24 1 10.4034 1.4533 0.1851 25 8 10.6060 3.5217 0.3128 26 6 11.2108 3.3194 1.5916 27 7 5.5636 1.0229 0.5900 28 7 4.3405 0.7965 0.9227 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9967 2.6564 -1.7327 37 1 8.1022 1.3875 0.0760 38 1 9.1097 1.7131 -3.4575 39 1 9.4373 0.4229 -2.2618 40 1 14.7375 2.2830 -2.8384 41 1 12.3796 1.4783 -1.0565 42 1 12.1103 3.1512 -1.6205 43 1 12.2109 2.9067 1.4593 44 1 11.2771 4.2721 2.1170 45 1 10.6054 2.6249 2.1741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082280574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:36 Heat of formation + Delta-G solvation = 44.869861 kcal Electronic energy + Delta-G solvation = -27182.181526 eV Core-core repulsion = 23238.192387 eV Total energy + Delta-G solvation = -3943.989139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36434 -39.46935 -37.98945 -36.37734 -35.83375 -34.03486 -32.96881 -31.78711 -30.92200 -28.75826 -27.63622 -26.92322 -26.04822 -24.49382 -23.46950 -22.94704 -21.85432 -20.65142 -20.42985 -19.84070 -18.29200 -17.04504 -16.55108 -16.41755 -16.22135 -15.53013 -15.51102 -15.02367 -14.74508 -14.51890 -14.39944 -14.17779 -13.92182 -13.81875 -13.22136 -13.14831 -12.79720 -12.58240 -12.39156 -12.21981 -12.03765 -11.81612 -11.58223 -11.52046 -11.30964 -11.15169 -10.96249 -10.75256 -10.71128 -10.57500 -10.16497 -10.00207 -9.90561 -9.73199 -9.44118 -9.04455 -8.71084 -8.53281 -6.83922 -5.68561 -3.03457 0.95885 1.65902 1.76634 3.27118 3.40410 3.44769 3.48446 3.49924 3.88267 4.08124 4.18124 4.19944 4.46032 4.54436 4.62692 4.66419 4.79207 4.84641 4.99714 5.14832 5.18784 5.40788 5.44227 5.47195 5.53475 5.61139 5.64737 5.66551 5.71064 5.78530 5.91907 5.98811 6.11441 6.12006 6.23022 6.57858 6.68676 6.90592 7.31242 7.52693 7.61584 7.76044 7.87310 7.92115 8.24872 8.38065 9.22207 9.82299 10.45855 11.42811 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.002565 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.403205 B =10915.057923 C =11931.758885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.363 5.363 5 C 0.091 3.909 6 C -0.095 4.095 7 C 0.603 3.397 8 O -0.536 6.536 9 N -0.699 5.699 10 C 0.134 3.866 11 H 0.106 0.894 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.227 4.227 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.915 3.085 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.166 3.834 23 C 0.055 3.945 24 H 0.065 0.935 25 O -0.377 6.377 26 C 0.034 3.966 27 N -0.205 5.205 28 N -0.066 5.066 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.205 0.795 37 H 0.404 0.596 38 H 0.052 0.948 39 H 0.024 0.976 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.294 -1.426 9.571 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.065 4.065 6 C -0.234 4.234 7 C 0.386 3.614 8 O -0.412 6.412 9 N -0.348 5.348 10 C 0.029 3.971 11 H 0.124 0.876 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.355 4.355 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.745 3.255 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.040 3.960 23 C -0.004 4.004 24 H 0.083 0.917 25 O -0.296 6.296 26 C -0.063 4.063 27 N -0.079 5.079 28 N -0.047 5.047 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.222 0.778 37 H 0.239 0.761 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -24.155 -1.587 9.973 26.181 hybrid contribution 0.501 -0.089 -1.059 1.175 sum -23.654 -1.676 8.914 25.333 Atomic orbital electron populations 1.21706 0.93849 1.02896 1.02333 1.21839 0.96949 0.94582 1.04317 1.22151 0.72583 1.00090 1.05149 1.50549 1.08777 1.35371 1.20134 1.23403 0.90157 0.97039 0.95919 1.21580 0.94737 1.07924 0.99183 1.16717 0.81700 0.79811 0.83135 1.90824 1.86518 1.38478 1.25379 1.45736 1.05030 1.52808 1.31256 1.22438 0.81459 1.00214 0.93024 0.87591 1.21831 0.86913 0.95259 0.95689 1.44254 1.01309 1.76890 1.10373 1.19027 0.89883 1.37211 0.89417 0.90201 1.24818 0.96521 1.01298 0.97778 1.69926 1.09216 1.50470 1.27403 0.86154 0.79043 0.77952 0.82336 1.21074 1.21622 1.21178 1.21561 0.90386 1.00314 0.83708 1.23837 0.96716 0.86642 0.93160 0.91740 1.87902 1.81400 1.31692 1.28565 1.22713 0.97151 1.01440 0.84974 1.74641 1.12858 1.10043 1.10325 1.81946 0.93402 1.17440 1.11880 0.92096 0.92200 0.91620 0.90949 0.90006 0.88367 0.87671 0.77839 0.76106 0.92986 0.95843 0.93631 0.93330 0.91892 0.93646 0.90280 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.91 37.16 0.37 -0.06 16 2 C -0.14 -0.64 6.14 -26.73 -0.16 -0.81 16 3 C 0.12 0.55 6.54 -4.04 -0.03 0.53 16 4 N -0.36 -3.28 3.69 -61.06 -0.23 -3.50 16 5 C 0.09 0.92 11.27 -16.83 -0.19 0.73 16 6 C -0.09 -1.29 6.99 -83.55 -0.58 -1.87 16 7 C 0.60 9.89 7.82 -12.48 -0.10 9.79 16 8 O -0.54 -10.19 16.61 5.29 0.09 -10.10 16 9 N -0.70 -11.50 5.23 -52.77 -0.28 -11.77 16 10 C 0.13 2.62 3.04 -65.78 -0.20 2.42 16 11 H 0.11 2.30 7.73 -51.92 -0.40 1.90 16 12 C 0.13 2.88 6.93 -2.53 -0.02 2.86 16 13 N -0.60 -15.78 3.39 -170.07 -0.58 -16.35 16 14 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.31 10.31 55.49 0.57 -26.74 16 18 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.17 4.11 5.16 -3.06 -0.02 4.09 16 23 C 0.06 1.09 3.06 -24.89 -0.08 1.02 16 24 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 25 O -0.38 -7.19 10.44 -35.23 -0.37 -7.56 16 26 C 0.03 0.50 10.85 101.05 1.10 1.60 16 27 N -0.20 -2.85 12.04 32.85 0.40 -2.45 16 28 N -0.07 -0.82 13.65 60.35 0.82 0.01 16 29 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.22 8.08 -51.93 -0.42 -0.20 16 36 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.40 5.94 8.20 -40.82 -0.33 5.61 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 42 H 0.06 1.76 7.29 -51.92 -0.38 1.38 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -34.79 379.92 -5.96 -40.75 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.94 Total: 1.25 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -0.16 Total: 13.36 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.71 Total: -60.81 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.28 Total: -17.66 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.79 -5.96 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082280574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.619 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds