Wall clock time and date at job start Fri Apr 10 2020 18:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46874 * 2 1 4 4 N 1.46499 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59249 * 124.99808 * 4 3 2 6 6 C 1.36598 * 106.84098 * 180.02562 * 5 4 3 7 7 C 1.47522 * 125.76991 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99493 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99730 * 179.97438 * 9 7 6 11 11 H 1.09007 * 110.88395 * 37.43411 * 10 9 7 12 12 C 1.54910 * 111.00763 * 273.54930 * 10 9 7 13 13 N 1.47423 * 104.82934 * 204.87761 * 12 10 9 14 14 C 1.36943 * 125.64463 * 204.09154 * 13 12 10 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27811 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48496 * 109.47031 * 59.99836 * 18 16 14 20 20 H 1.48497 * 109.47267 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47169 * 300.00118 * 18 16 14 22 22 C 1.47021 * 108.70520 * 24.35776 * 13 12 10 23 23 C 1.54331 * 107.26526 * 358.58242 * 22 13 12 24 24 H 1.08999 * 110.51339 * 96.45584 * 23 22 13 25 25 O 1.42902 * 110.84850 * 219.67676 * 23 22 13 26 26 C 1.42905 * 114.00029 * 263.69061 * 25 23 22 27 27 N 1.34400 * 108.45451 * 0.24653 * 6 5 4 28 28 N 1.28763 * 109.52662 * 359.58814 * 27 6 5 29 29 H 1.09000 * 109.47106 * 299.99686 * 1 2 3 30 30 H 1.09001 * 109.47061 * 59.99593 * 1 2 3 31 31 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47106 * 240.00314 * 2 1 3 33 33 H 1.08994 * 109.47111 * 120.00041 * 2 1 3 34 34 H 1.09000 * 109.46998 * 60.00248 * 3 2 1 35 35 H 1.08994 * 109.47285 * 299.99934 * 3 2 1 36 36 H 1.08003 * 126.57975 * 0.02562 * 5 4 3 37 37 H 0.96993 * 120.00181 * 0.02562 * 9 7 6 38 38 H 1.09000 * 110.36626 * 86.03818 * 12 10 9 39 39 H 1.08995 * 110.45617 * 323.76469 * 12 10 9 40 40 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.88257 * 118.13163 * 22 13 12 42 42 H 1.09008 * 109.88006 * 239.29375 * 22 13 12 43 43 H 1.09000 * 109.46774 * 59.99903 * 26 25 23 44 44 H 1.08992 * 109.47268 * 180.02562 * 26 25 23 45 45 H 1.09004 * 109.47055 * 300.00499 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0633 -0.8858 6 6 5.5945 1.7981 -0.5074 7 6 6.8109 2.2764 -1.1915 8 8 6.7163 2.9718 -2.1845 9 7 8.0269 1.9425 -0.7158 10 6 9.2349 2.4170 -1.3955 11 1 9.0981 3.4327 -1.7670 12 6 9.6411 1.4566 -2.5410 13 7 11.0903 1.6656 -2.7125 14 6 11.8029 1.4163 -3.8551 15 1 11.3014 1.0323 -4.7312 16 6 13.1706 1.6511 -3.8851 17 7 13.7818 2.1185 -2.8173 18 14 14.1439 1.3038 -5.4412 19 1 13.6129 2.1332 -6.5527 20 1 15.5735 1.6361 -5.2155 21 1 14.0189 -0.1336 -5.7928 22 6 11.6450 2.1799 -1.4518 23 6 10.4707 2.3283 -0.4615 24 1 10.4034 1.4533 0.1851 25 8 10.6060 3.5217 0.3128 26 6 11.2108 3.3194 1.5916 27 7 5.5636 1.0229 0.5900 28 7 4.3405 0.7965 0.9227 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9967 2.6564 -1.7327 37 1 8.1022 1.3875 0.0760 38 1 9.1097 1.7131 -3.4575 39 1 9.4373 0.4229 -2.2618 40 1 14.7375 2.2830 -2.8384 41 1 12.3796 1.4783 -1.0565 42 1 12.1103 3.1512 -1.6205 43 1 12.2109 2.9067 1.4593 44 1 11.2771 4.2721 2.1170 45 1 10.6054 2.6249 2.1741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082280574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:35 Heat of formation + Delta-G solvation = 18.428057 kcal Electronic energy + Delta-G solvation = -27183.328129 eV Core-core repulsion = 23238.192387 eV Total energy + Delta-G solvation = -3945.135742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.24382 -40.92196 -39.51028 -37.49759 -36.91459 -35.63613 -33.80719 -33.47147 -31.97335 -30.51498 -28.95625 -27.88813 -27.50855 -26.20532 -24.62150 -23.67621 -22.56831 -22.23817 -21.99762 -21.21026 -19.44544 -18.81099 -17.96265 -17.37960 -17.19970 -17.08386 -16.59568 -16.18137 -15.83891 -15.82682 -15.66800 -15.62309 -15.25538 -15.00471 -14.53550 -14.37099 -14.05534 -13.64040 -13.59576 -13.24708 -13.16738 -12.98260 -12.95286 -12.71871 -12.58945 -12.49742 -12.30792 -12.23519 -12.10999 -11.84865 -11.73656 -11.64753 -11.32052 -11.26633 -10.75214 -10.60148 -10.39852 -10.08645 -8.96048 -7.85564 -5.24069 0.14829 0.59759 1.09810 1.46901 1.51155 1.57134 1.98111 2.21033 2.48031 2.76676 3.14264 3.32969 3.35154 3.51383 3.73935 3.84547 3.87923 3.92133 3.96649 4.09769 4.16931 4.23879 4.36455 4.45123 4.48196 4.53978 4.60130 4.65365 4.72270 4.83234 4.84353 4.87289 4.97918 5.13169 5.18602 5.31979 5.33562 5.37467 5.43973 5.50611 5.66445 6.14406 6.30408 6.38353 6.88933 7.05518 7.10908 7.70722 8.33783 9.23926 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.002565 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.403205 B =10915.057923 C =11931.758885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.113 3.887 6 C -0.122 4.122 7 C 0.606 3.394 8 O -0.566 6.566 9 N -0.692 5.692 10 C 0.153 3.847 11 H 0.083 0.917 12 C 0.132 3.868 13 N -0.621 5.621 14 C -0.247 4.247 15 H 0.084 0.916 16 C -0.064 4.064 17 N -0.950 5.950 18 Si 0.984 3.016 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.275 1.275 22 C 0.177 3.823 23 C 0.075 3.925 24 H 0.092 0.908 25 O -0.395 6.395 26 C 0.026 3.974 27 N -0.224 5.224 28 N -0.084 5.084 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.237 0.763 37 H 0.415 0.585 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.249 0.751 41 H 0.022 0.978 42 H 0.021 0.979 43 H 0.037 0.963 44 H 0.102 0.898 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.893 -1.593 9.864 28.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.132 5.132 5 C -0.046 4.046 6 C -0.262 4.262 7 C 0.392 3.608 8 O -0.445 6.445 9 N -0.342 5.342 10 C 0.047 3.953 11 H 0.102 0.898 12 C 0.005 3.995 13 N -0.349 5.349 14 C -0.375 4.375 15 H 0.102 0.898 16 C -0.257 4.257 17 N -0.598 5.598 18 Si 0.811 3.189 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.200 1.200 22 C 0.051 3.949 23 C 0.015 3.985 24 H 0.109 0.891 25 O -0.313 6.313 26 C -0.070 4.070 27 N -0.098 5.098 28 N -0.064 5.064 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.253 0.747 37 H 0.251 0.749 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.121 0.879 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.820 -1.783 10.312 28.790 hybrid contribution 1.166 -0.031 -1.110 1.610 sum -25.654 -1.814 9.202 27.315 Atomic orbital electron populations 1.21679 0.92261 1.03054 1.03332 1.21789 0.98199 0.94390 1.02970 1.22673 0.69823 1.00544 1.07772 1.50858 1.10123 1.33600 1.18656 1.23848 0.88994 0.95767 0.95956 1.21287 0.94697 1.09981 1.00238 1.17031 0.82211 0.78939 0.82653 1.90804 1.87012 1.39853 1.26786 1.45534 1.04223 1.53060 1.31419 1.21904 0.82782 0.98342 0.92319 0.89841 1.21910 0.84720 0.96428 0.96424 1.44523 1.03105 1.76879 1.10398 1.19420 0.90575 1.37115 0.90431 0.89803 1.25706 0.97531 1.01457 1.01004 1.70153 1.09001 1.51359 1.29272 0.85085 0.77058 0.78177 0.78578 1.20370 1.21844 1.20040 1.21278 0.91915 0.97172 0.84547 1.23487 0.94205 0.88137 0.92621 0.89065 1.87882 1.81663 1.31444 1.30342 1.22993 0.96933 1.03572 0.83494 1.74611 1.13889 1.10582 1.10714 1.81870 0.93337 1.18245 1.12956 0.91320 0.90952 0.91959 0.91939 0.91789 0.86640 0.84183 0.74651 0.74852 0.93931 0.94566 0.94182 0.95991 0.96033 0.94437 0.87942 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.91 71.98 0.71 0.25 16 2 C -0.14 -0.96 6.14 30.60 0.19 -0.77 16 3 C 0.11 0.64 6.54 86.38 0.56 1.20 16 4 N -0.35 -5.36 3.69 -347.10 -1.28 -6.64 16 5 C 0.11 1.98 11.27 83.85 0.95 2.92 16 6 C -0.12 -3.15 6.99 40.82 0.29 -2.87 16 7 C 0.61 19.46 7.82 86.69 0.68 20.14 16 8 O -0.57 -21.34 16.61 -3.99 -0.07 -21.41 16 9 N -0.69 -22.36 5.23 -439.12 -2.30 -24.66 16 10 C 0.15 6.03 3.04 46.38 0.14 6.17 16 11 H 0.08 3.71 7.73 -2.38 -0.02 3.69 16 12 C 0.13 5.90 6.93 86.86 0.60 6.51 16 13 N -0.62 -33.59 3.39 -691.96 -2.35 -35.94 16 14 C -0.25 -14.35 10.28 84.03 0.86 -13.48 16 15 H 0.08 4.66 7.83 -2.91 -0.02 4.63 16 16 C -0.06 -3.72 5.49 84.86 0.47 -3.26 16 17 N -0.95 -58.09 10.31 21.65 0.22 -57.86 16 18 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.18 9.10 5.16 86.73 0.45 9.55 16 23 C 0.07 2.96 3.06 31.79 0.10 3.05 16 24 H 0.09 3.12 7.69 -2.39 -0.02 3.10 16 25 O -0.39 -14.94 10.44 -148.98 -1.55 -16.50 16 26 C 0.03 0.73 10.85 113.37 1.23 1.96 16 27 N -0.22 -5.98 12.04 -49.99 -0.60 -6.58 16 28 N -0.08 -1.93 13.65 37.02 0.51 -1.42 16 29 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.14 -0.09 8.08 -2.39 -0.02 -0.11 16 36 H 0.24 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.41 11.72 8.20 -92.71 -0.76 10.96 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.02 1.23 7.51 -2.39 -0.02 1.21 16 42 H 0.02 1.27 7.29 -2.38 -0.02 1.25 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 Total: -1.00 -78.49 379.92 2.07 -76.42 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.24 Total: 14.46 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 7.22 Total: 31.37 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -5.80 Total: -133.11 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.62 Total: -37.90 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -78.49 2.07 -76.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082280574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.851 kcal (2) G-P(sol) polarization free energy of solvation -78.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds