Wall clock time and date at job start Fri Apr 10 2020 18:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46863 * 124.34006 * 2 1 4 4 C 1.54476 * 105.42767 * 197.01825 * 3 2 1 5 5 H 1.08998 * 110.97324 * 216.43898 * 4 3 2 6 6 C 1.50710 * 110.96750 * 92.71439 * 4 3 2 7 7 O 1.21280 * 119.99951 * 3.09454 * 6 4 3 8 8 N 1.34777 * 119.99647 * 183.08836 * 6 4 3 9 9 C 1.43587 * 116.25686 * 357.06040 * 8 6 4 10 10 C 1.51976 * 111.25490 * 204.20854 * 9 8 6 11 11 O 1.41318 * 111.53913 * 318.86409 * 10 9 8 12 12 C 1.40789 * 118.40236 * 56.93610 * 11 10 9 13 13 H 1.08998 * 109.35158 * 188.31001 * 12 11 10 14 14 C 1.54207 * 110.22611 * 67.70296 * 12 11 10 15 15 N 1.46875 * 106.39407 * 210.33871 * 14 12 11 16 16 C 1.36929 * 125.36428 * 197.84589 * 15 14 12 17 17 H 1.08001 * 120.00435 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.00015 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00070 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47219 * 59.99891 * 20 18 16 22 22 H 1.48497 * 109.47465 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47145 * 300.00465 * 20 18 16 24 24 C 1.46786 * 109.26920 * 17.83905 * 15 14 12 25 25 C 1.44547 * 117.31713 * 176.22898 * 8 6 4 26 26 H 1.08998 * 109.48724 * 285.87351 * 25 8 6 27 27 C 1.54627 * 101.79919 * 334.58250 * 4 3 2 28 28 C 1.34423 * 124.35285 * 179.97438 * 2 1 3 29 29 O 1.21283 * 124.93756 * 359.55389 * 28 2 1 30 30 H 1.09003 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47281 * 299.97501 * 1 2 3 32 32 H 1.09003 * 109.47271 * 59.97462 * 1 2 3 33 33 H 1.09006 * 110.25679 * 78.03968 * 3 2 1 34 34 H 1.08999 * 110.28004 * 316.00994 * 3 2 1 35 35 H 1.09000 * 109.68751 * 83.53803 * 9 8 6 36 36 H 1.08994 * 108.88241 * 324.36035 * 9 8 6 37 37 H 1.08996 * 109.07061 * 198.33056 * 10 9 8 38 38 H 1.09007 * 109.06441 * 79.38980 * 10 9 8 39 39 H 1.09003 * 110.06641 * 91.10393 * 14 12 11 40 40 H 1.09001 * 110.11765 * 329.60052 * 14 12 11 41 41 H 0.97000 * 119.99835 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.83336 * 239.35940 * 24 15 14 43 43 H 1.09006 * 109.89881 * 118.43591 * 24 15 14 44 44 H 1.08999 * 110.48867 * 143.49086 * 27 4 3 45 45 H 1.09007 * 110.48655 * 266.00210 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2934 1.2127 0.0000 4 6 3.7009 0.7487 -0.4358 5 1 4.4758 1.3010 0.0959 6 6 3.8749 0.8815 -1.9270 7 8 2.9874 1.3603 -2.6007 8 7 5.0167 0.4681 -2.5116 9 6 6.0385 -0.0251 -1.6316 10 6 7.4157 0.0990 -2.2623 11 8 7.3930 -0.2517 -3.6310 12 6 6.5167 0.4435 -4.4860 13 1 6.5095 -0.0371 -5.4643 14 6 6.9673 1.9110 -4.6326 15 7 5.7481 2.6985 -4.8577 16 6 5.7074 3.9659 -5.3742 17 1 4.7591 4.4662 -5.5037 18 6 6.8852 4.6080 -5.7315 19 7 8.0410 3.9982 -5.5742 20 14 6.8298 6.3374 -6.4355 21 1 6.2068 7.2543 -5.4474 22 1 8.2106 6.7948 -6.7340 23 1 6.0276 6.3376 -7.6853 24 6 4.5802 1.9126 -4.4419 25 6 5.0894 0.5450 -3.9532 26 1 4.4811 -0.2466 -4.3907 27 6 3.6898 -0.7378 -0.0103 28 6 2.2235 -1.1098 0.0005 29 8 1.7946 -2.2442 0.0087 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8901 32 1 -0.3634 0.5142 -0.8898 33 1 2.3313 1.6438 1.0004 34 1 1.8992 1.9396 -0.7101 35 1 5.8481 -1.0727 -1.3985 36 1 6.0178 0.5531 -0.7079 37 1 8.1082 -0.5591 -1.7375 38 1 7.7609 1.1283 -2.1641 39 1 7.6406 2.0122 -5.4838 40 1 7.4644 2.2433 -3.7213 41 1 8.8639 4.4467 -5.8242 42 1 3.9065 1.7755 -5.2877 43 1 4.0582 2.4235 -3.6327 44 1 4.2326 -1.3459 -0.7339 45 1 4.1217 -0.8532 0.9839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083098224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:39 Heat of formation + Delta-G solvation = -70.386601 kcal Electronic energy + Delta-G solvation = -29495.075375 eV Core-core repulsion = 25513.795590 eV Total energy + Delta-G solvation = -3981.279786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61624 -41.23891 -39.65619 -37.76905 -37.26199 -36.35074 -34.56189 -33.61199 -31.67406 -29.54509 -29.33735 -28.62915 -27.71896 -26.55301 -24.69957 -24.31960 -22.46880 -21.19636 -20.69858 -19.93801 -19.16463 -18.55515 -18.23064 -17.80350 -17.23854 -16.94682 -16.62274 -16.38266 -16.36421 -16.01950 -15.63545 -15.40923 -15.08611 -14.63889 -14.58600 -14.49841 -14.23208 -14.01161 -13.66840 -13.37727 -13.28436 -13.10248 -13.06112 -12.98134 -12.76879 -12.69679 -12.43649 -12.28535 -12.14429 -12.08843 -11.82375 -11.65748 -10.98404 -10.80882 -10.75760 -10.35755 -9.75096 -9.57095 -8.89216 -7.83518 -5.25279 1.44565 1.45906 1.47826 1.51492 1.54550 1.78548 2.08406 2.46587 2.76475 3.17427 3.27470 3.30117 3.32908 3.55965 3.72604 3.76797 3.82185 3.97439 4.08171 4.15217 4.32210 4.34984 4.38880 4.47298 4.47967 4.49811 4.65127 4.68818 4.70808 4.81867 4.83266 4.86436 4.92452 5.01927 5.08238 5.38775 5.47126 5.48709 5.61719 5.68503 6.06293 6.19867 6.22747 6.44120 7.04867 7.07722 7.10938 7.73251 8.34501 9.20522 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017966 B = 0.003953 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.106385 B = 7082.335823 C = 8078.977991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.621 5.621 3 C 0.115 3.885 4 C -0.115 4.115 5 H 0.169 0.831 6 C 0.500 3.500 7 O -0.560 6.560 8 N -0.589 5.589 9 C 0.066 3.934 10 C 0.045 3.955 11 O -0.375 6.375 12 C 0.086 3.914 13 H 0.116 0.884 14 C 0.153 3.847 15 N -0.621 5.621 16 C -0.245 4.245 17 H 0.074 0.926 18 C -0.058 4.058 19 N -0.946 5.946 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.126 3.874 25 C 0.126 3.874 26 H 0.078 0.922 27 C -0.136 4.136 28 C 0.502 3.498 29 O -0.585 6.585 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.146 0.854 38 H 0.035 0.965 39 H 0.060 0.940 40 H -0.001 1.001 41 H 0.249 0.751 42 H 0.017 0.983 43 H 0.055 0.945 44 H 0.109 0.891 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -8.707 16.927 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.354 5.354 3 C -0.007 4.007 4 C -0.136 4.136 5 H 0.186 0.814 6 C 0.289 3.711 7 O -0.439 6.439 8 N -0.322 5.322 9 C -0.056 4.056 10 C -0.031 4.031 11 O -0.292 6.292 12 C 0.026 3.974 13 H 0.133 0.867 14 C 0.027 3.973 15 N -0.349 5.349 16 C -0.374 4.374 17 H 0.092 0.908 18 C -0.251 4.251 19 N -0.595 5.595 20 Si 0.808 3.192 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.001 3.999 25 C 0.020 3.980 26 H 0.096 0.904 27 C -0.176 4.176 28 C 0.291 3.709 29 O -0.466 6.466 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.273 -9.037 16.412 19.758 hybrid contribution -0.221 1.349 -0.979 1.682 sum -6.494 -7.687 15.433 18.424 Atomic orbital electron populations 1.21658 0.77464 1.03126 1.02968 1.48350 1.07447 1.07646 1.71970 1.22222 0.87792 0.86790 1.03940 1.22441 1.01199 0.99015 0.90903 0.81413 1.21258 0.81396 0.76849 0.91560 1.90663 1.42688 1.44561 1.65983 1.46445 1.16551 1.63546 1.05618 1.21994 0.87499 1.02163 0.93939 1.22643 0.97158 1.01937 0.81387 1.86864 1.61355 1.61424 1.19572 1.22664 0.86964 0.94104 0.93678 0.86666 1.21760 0.89160 0.87248 0.99131 1.44505 1.02019 1.14020 1.74317 1.19325 0.93349 0.90347 1.34374 0.90789 1.25596 0.94840 1.02561 1.02148 1.70097 0.97131 1.37943 1.54326 0.85138 0.76422 0.79295 0.78364 1.20433 1.21512 1.20473 1.21817 0.89817 0.91026 0.97255 1.21270 0.98020 0.97378 0.81285 0.90426 1.22550 0.93109 0.94200 1.07727 1.21492 0.90954 0.83988 0.74420 1.90693 1.79698 1.22876 1.53319 0.91393 0.89231 0.92021 0.85993 0.90224 0.88214 0.86002 0.83598 0.94651 0.92190 0.98279 0.94158 0.96544 0.92746 0.87285 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 11.14 127.77 1.42 3.00 16 2 N -0.62 -12.57 3.34 -842.66 -2.81 -15.38 16 3 C 0.11 1.81 6.71 86.81 0.58 2.39 16 4 C -0.11 -1.75 2.52 -10.48 -0.03 -1.77 16 5 H 0.17 1.23 7.07 -2.39 -0.02 1.22 16 6 C 0.50 13.75 6.42 87.66 0.56 14.31 16 7 O -0.56 -20.40 12.50 -3.03 -0.04 -20.44 16 8 N -0.59 -16.61 3.04 -810.29 -2.46 -19.07 16 9 C 0.07 1.22 4.99 86.58 0.43 1.65 16 10 C 0.05 1.07 6.73 71.64 0.48 1.55 16 11 O -0.38 -12.23 10.25 -145.86 -1.49 -13.73 16 12 C 0.09 3.26 3.91 30.90 0.12 3.39 16 13 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 14 C 0.15 7.53 5.26 86.72 0.46 7.98 16 15 N -0.62 -32.97 3.39 -696.21 -2.36 -35.33 16 16 C -0.25 -14.16 10.25 84.04 0.86 -13.29 16 17 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.06 -3.33 5.48 84.86 0.47 -2.86 16 19 N -0.95 -56.14 10.18 21.65 0.22 -55.92 16 20 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.13 5.73 6.09 86.63 0.53 6.26 16 25 C 0.13 4.56 3.39 45.55 0.15 4.72 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 C -0.14 -1.88 5.70 30.59 0.17 -1.70 16 28 C 0.50 11.77 8.03 87.90 0.71 12.47 16 29 O -0.58 -18.85 17.35 -3.04 -0.05 -18.91 16 30 H 0.07 1.38 7.53 -2.39 -0.02 1.36 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.08 1.66 6.98 -2.39 -0.02 1.64 16 35 H 0.10 1.31 6.39 -2.39 -0.02 1.30 16 36 H 0.12 1.34 6.13 -2.39 -0.01 1.33 16 37 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.04 1.02 6.73 -2.38 -0.02 1.00 16 39 H 0.06 3.41 6.25 -2.39 -0.01 3.39 16 40 H 0.00 -0.03 6.48 -2.39 -0.02 -0.05 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 2.61 5.12 -2.38 -0.01 2.60 16 44 H 0.11 1.62 5.59 -2.39 -0.01 1.61 16 45 H 0.16 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -83.39 343.08 0.97 -82.42 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.02 Total: 10.34 kcal Atomic # 6 Polarization: 31.16 SS G_CDS: 6.92 Total: 38.09 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -7.41 Total: -125.71 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -1.59 Total: -53.07 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -83.39 0.97 -82.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083098224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.032 kcal (2) G-P(sol) polarization free energy of solvation -83.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds