Wall clock time and date at job start Fri Apr 10 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47324 * 2 1 4 4 C 1.53000 * 109.47287 * 240.00317 * 2 1 3 5 5 N 1.46502 * 109.47481 * 120.00043 * 2 1 3 6 6 C 1.34820 * 126.59172 * 75.27300 * 5 2 1 7 7 C 1.36596 * 106.83745 * 180.15204 * 6 5 2 8 8 C 1.47520 * 125.77155 * 179.89519 * 7 6 5 9 9 O 1.21593 * 119.99926 * 359.71790 * 8 7 6 10 10 N 1.34777 * 120.00124 * 179.71916 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27945 * 10 8 7 12 12 H 1.08995 * 110.88814 * 30.83840 * 11 10 8 13 13 C 1.54912 * 111.00363 * 266.91713 * 11 10 8 14 14 N 1.47419 * 104.83391 * 204.91815 * 13 11 10 15 15 C 1.36932 * 125.65129 * 204.08092 * 14 13 11 16 16 H 1.08001 * 119.99867 * 0.03009 * 15 14 13 17 17 C 1.38810 * 120.00256 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00198 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99953 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46940 * 60.00210 * 19 17 15 21 21 H 1.48501 * 109.46936 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47132 * 299.99914 * 19 17 15 23 23 C 1.47028 * 108.70371 * 24.12534 * 14 13 11 24 24 C 1.54319 * 107.26947 * 358.94679 * 23 14 13 25 25 H 1.09005 * 110.86971 * 219.37549 * 24 23 14 26 26 O 1.42892 * 110.72474 * 96.16609 * 24 23 14 27 27 N 1.34400 * 108.45615 * 359.63377 * 7 6 5 28 28 N 1.28756 * 109.52879 * 0.22926 * 27 7 6 29 29 H 1.08996 * 109.47187 * 299.99313 * 1 2 3 30 30 H 1.09003 * 109.47526 * 60.00234 * 1 2 3 31 31 H 1.09010 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47887 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47133 * 300.00463 * 3 2 1 34 34 H 1.09007 * 109.46800 * 59.99589 * 3 2 1 35 35 H 1.09001 * 109.46856 * 299.99628 * 4 2 1 36 36 H 1.09003 * 109.47657 * 59.99700 * 4 2 1 37 37 H 1.09002 * 109.47527 * 180.02562 * 4 2 1 38 38 H 1.07994 * 126.58245 * 0.02562 * 6 5 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 40 40 H 1.09002 * 110.36198 * 323.75448 * 13 11 10 41 41 H 1.08996 * 110.36609 * 86.07549 * 13 11 10 42 42 H 0.96992 * 119.99816 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.88555 * 239.52165 * 23 14 13 44 44 H 1.09003 * 109.88039 * 118.35739 * 23 14 13 45 45 H 0.96706 * 113.99752 * 66.48207 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0269 -2.0220 1.4083 7 6 2.5630 -2.2215 2.6487 8 6 2.7651 -3.5294 3.3006 9 8 2.4383 -4.5510 2.7279 10 7 3.3120 -3.5918 4.5308 11 6 3.5184 -4.8910 5.1755 12 1 3.7102 -5.6667 4.4342 13 6 2.3110 -5.2644 6.0713 14 7 2.8601 -6.1905 7.0783 15 6 2.1449 -7.1274 7.7752 16 1 1.0836 -7.2331 7.6048 17 6 2.7837 -7.9413 8.7005 18 7 4.0770 -7.8123 8.9084 19 14 1.8079 -9.2199 9.6507 20 1 1.1875 -10.1766 8.6993 21 1 2.7158 -9.9538 10.5685 22 1 0.7450 -8.5461 10.4390 23 6 4.3030 -5.9409 7.2112 24 6 4.6675 -4.8195 6.2157 25 1 5.6291 -5.0179 5.7422 26 8 4.6801 -3.5484 6.8684 27 7 2.8804 -1.0252 3.1726 28 7 2.5712 -0.0944 2.3384 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 1.6753 -2.7843 0.7289 39 1 3.5731 -2.7768 4.9874 40 1 1.9076 -4.3745 6.5544 41 1 1.5397 -5.7594 5.4813 42 1 4.5234 -8.3813 9.5547 43 1 4.8597 -6.8464 6.9698 44 1 4.5319 -5.6225 8.2282 45 1 5.3802 -3.4521 7.5285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083511248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:50 Heat of formation + Delta-G solvation = 12.416489 kcal Electronic energy + Delta-G solvation = -27502.530387 eV Core-core repulsion = 23557.133964 eV Total energy + Delta-G solvation = -3945.396423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.31880 -40.87771 -39.35451 -38.27793 -36.45672 -35.47026 -33.65035 -32.98925 -31.94822 -30.21778 -28.84997 -28.40896 -28.37836 -26.51404 -24.78166 -24.42338 -22.34676 -21.86138 -21.62482 -20.87020 -19.25991 -18.51750 -18.29908 -17.34403 -17.11791 -16.93598 -16.72734 -15.87370 -15.74940 -15.71274 -15.56040 -15.06430 -14.89277 -14.76779 -14.50994 -14.29996 -13.93082 -13.63672 -13.37525 -13.31290 -13.17479 -13.16815 -12.81000 -12.76584 -12.72715 -12.44479 -12.34453 -12.26514 -12.14569 -11.99781 -11.91549 -11.85328 -11.27236 -11.26778 -10.86310 -10.74651 -10.42537 -10.04662 -8.94031 -7.86986 -5.23149 0.14904 0.60565 1.03719 1.46218 1.49889 1.55960 2.01728 2.20760 2.50100 3.10950 3.21827 3.27982 3.31758 3.61509 3.66141 3.74764 3.78345 3.86626 3.94282 3.96218 4.19693 4.26224 4.45006 4.55944 4.58819 4.61430 4.66615 4.68997 4.76434 4.80690 4.82362 4.83596 5.02770 5.08874 5.20508 5.28115 5.35760 5.42878 5.49098 5.55470 5.65842 6.15352 6.45422 6.86306 6.94023 7.07508 7.13775 7.71616 8.35943 9.22910 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.002453 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.405980 B =11414.055020 C =11883.385765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 C -0.147 4.147 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.109 3.891 7 C -0.121 4.121 8 C 0.602 3.398 9 O -0.570 6.570 10 N -0.686 5.686 11 C 0.151 3.849 12 H 0.102 0.898 13 C 0.132 3.868 14 N -0.621 5.621 15 C -0.247 4.247 16 H 0.078 0.922 17 C -0.062 4.062 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.162 3.838 24 C 0.089 3.911 25 H 0.092 0.908 26 O -0.566 6.566 27 N -0.227 5.227 28 N -0.081 5.081 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.229 0.771 39 H 0.419 0.581 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.250 0.750 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 18.788 -22.999 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.049 4.049 7 C -0.261 4.261 8 C 0.387 3.613 9 O -0.448 6.448 10 N -0.336 5.336 11 C 0.044 3.956 12 H 0.120 0.880 13 C 0.006 3.994 14 N -0.348 5.348 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.255 4.255 18 N -0.597 5.597 19 Si 0.809 3.191 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.036 3.964 24 C 0.029 3.971 25 H 0.110 0.890 26 O -0.375 6.375 27 N -0.100 5.100 28 N -0.061 5.061 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.246 0.754 39 H 0.257 0.743 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.082 19.399 -22.985 30.234 hybrid contribution -0.033 -1.557 1.193 1.962 sum -3.115 17.842 -21.791 28.336 Atomic orbital electron populations 1.22323 0.90551 1.04107 1.04731 1.21617 0.96176 0.94410 0.80044 1.22024 1.01863 0.91993 1.04600 1.22351 1.02170 1.01854 0.95496 1.51204 1.40674 1.04963 1.15557 1.23604 0.96541 0.87786 0.97005 1.21312 1.15073 0.92726 0.96972 1.17086 0.76744 0.86473 0.80956 1.90783 1.53060 1.35553 1.65451 1.45448 1.61642 1.09963 1.16575 1.22059 0.94892 0.85663 0.92949 0.87992 1.21862 0.95185 0.92512 0.89877 1.44549 1.05383 1.39683 1.45149 1.19389 0.92366 1.10053 1.15764 0.90419 1.25635 0.97204 1.01919 1.00731 1.70108 1.08985 1.42381 1.38262 0.85114 0.77298 0.78600 0.78063 1.20313 1.21587 1.20482 1.21709 0.84403 0.94418 0.95853 1.23197 0.97528 0.84102 0.92281 0.88994 1.86252 1.59620 1.33082 1.58543 1.74649 1.13759 0.98324 1.23273 1.81863 1.16345 1.17101 0.90762 0.92752 0.86705 0.91170 0.92310 0.87081 0.92117 0.90476 0.86619 0.92014 0.75430 0.74349 0.96165 0.94667 0.94109 0.95364 0.95573 0.75157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.74 71.98 0.63 -0.43 16 2 C 0.16 1.48 1.25 3.60 0.00 1.48 16 3 C -0.15 -1.24 8.11 71.98 0.58 -0.66 16 4 C -0.16 -0.77 8.30 71.98 0.60 -0.18 16 5 N -0.34 -6.12 3.44 -306.91 -1.06 -7.17 16 6 C 0.11 2.21 10.43 83.85 0.87 3.08 16 7 C -0.12 -3.41 6.99 40.82 0.29 -3.12 16 8 C 0.60 20.25 7.82 86.69 0.68 20.93 16 9 O -0.57 -21.67 16.50 -4.01 -0.07 -21.74 16 10 N -0.69 -23.60 5.16 -439.13 -2.27 -25.86 16 11 C 0.15 5.89 3.31 46.39 0.15 6.04 16 12 H 0.10 4.12 7.53 -2.39 -0.02 4.10 16 13 C 0.13 6.15 6.92 86.86 0.60 6.75 16 14 N -0.62 -33.53 3.39 -691.99 -2.35 -35.88 16 15 C -0.25 -14.43 10.28 84.03 0.86 -13.57 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 18 N -0.95 -56.82 10.31 21.65 0.22 -56.60 16 19 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 C 0.16 7.94 5.14 86.73 0.45 8.39 16 24 C 0.09 3.32 4.20 31.78 0.13 3.46 16 25 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 26 O -0.57 -18.93 12.14 -148.98 -1.81 -20.74 16 27 N -0.23 -6.67 12.04 -50.00 -0.60 -7.27 16 28 N -0.08 -2.06 12.91 37.02 0.48 -1.58 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.06 0.71 8.06 -2.38 -0.02 0.69 16 35 H 0.08 0.31 7.43 -2.39 -0.02 0.29 16 36 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.23 3.13 7.62 -2.91 -0.02 3.10 16 39 H 0.42 13.93 7.27 -92.71 -0.67 13.25 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 43 H 0.03 1.53 7.38 -2.39 -0.02 1.51 16 44 H 0.03 1.41 7.43 -2.39 -0.02 1.39 16 45 H 0.40 10.13 9.12 -74.05 -0.68 9.46 16 Total: -1.00 -77.13 373.16 0.56 -76.56 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.33 Total: 22.58 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 6.32 Total: 29.06 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -5.57 Total: -134.36 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.88 Total: -42.47 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -77.13 0.56 -76.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083511248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.978 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds