Wall clock time and date at job start Fri Apr 10 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47053 * 2 1 4 4 C 1.36597 * 126.57565 * 270.02487 * 3 2 1 5 5 C 1.47528 * 125.77398 * 0.03451 * 4 3 2 6 6 O 1.21594 * 119.99566 * 359.71910 * 5 4 3 7 7 N 1.34774 * 120.00245 * 179.71730 * 5 4 3 8 8 C 1.46495 * 119.99954 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.64550 * 31.85499 * 8 7 5 10 10 C 1.54332 * 110.71782 * 268.52246 * 8 7 5 11 11 N 1.47023 * 107.27042 * 219.44402 * 10 8 7 12 12 C 1.36935 * 125.64847 * 178.96188 * 11 10 8 13 13 H 1.07999 * 119.99866 * 349.93564 * 12 11 10 14 14 C 1.38813 * 119.99567 * 169.94045 * 12 11 10 15 15 N 1.31612 * 120.00563 * 350.42002 * 14 12 11 16 16 Si 1.86808 * 119.99594 * 170.42416 * 14 12 11 17 17 H 1.48505 * 109.46851 * 94.13632 * 16 14 12 18 18 H 1.48492 * 109.47053 * 214.13657 * 16 14 12 19 19 H 1.48500 * 109.46994 * 334.13721 * 16 14 12 20 20 C 1.47428 * 108.70231 * 358.94098 * 11 10 8 21 21 C 1.54907 * 104.83214 * 24.12647 * 20 11 10 22 22 H 1.09006 * 111.00307 * 204.91421 * 21 20 11 23 23 O 1.42903 * 111.00519 * 81.06766 * 21 20 11 24 24 N 1.34402 * 108.45800 * 179.77504 * 4 3 2 25 25 N 1.28758 * 109.52395 * 0.22437 * 24 4 3 26 26 N 1.34814 * 126.58432 * 90.18934 * 3 2 1 27 27 C 1.46498 * 126.59624 * 359.96639 * 26 3 2 28 28 C 1.52995 * 109.47436 * 270.27830 * 27 26 3 29 29 H 1.09004 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46846 * 300.00022 * 1 2 3 31 31 H 1.08991 * 109.47306 * 60.00330 * 1 2 3 32 32 H 1.08997 * 109.47057 * 239.99471 * 2 1 3 33 33 H 1.09003 * 109.46958 * 119.99406 * 2 1 3 34 34 H 0.97002 * 119.99569 * 359.97438 * 7 5 4 35 35 H 1.08995 * 109.87785 * 338.85712 * 10 8 7 36 36 H 1.08997 * 109.88114 * 100.02482 * 10 8 7 37 37 H 0.97003 * 120.00613 * 179.97438 * 15 14 12 38 38 H 1.09003 * 110.36432 * 265.29052 * 20 11 10 39 39 H 1.08997 * 110.36770 * 142.96759 * 20 11 10 40 40 H 0.96709 * 114.00001 * 67.79829 * 23 21 20 41 41 H 1.09005 * 109.46653 * 30.27860 * 27 26 3 42 42 H 1.09004 * 109.47462 * 150.27155 * 27 26 3 43 43 H 1.09001 * 109.46834 * 299.99961 * 28 27 26 44 44 H 1.09004 * 109.47346 * 59.99254 * 28 27 26 45 45 H 1.08999 * 109.47277 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1884 -1.0970 5 6 2.1528 1.7671 -2.5028 6 8 1.7611 0.6457 -2.7628 7 7 2.4497 2.6250 -3.4989 8 6 2.2998 2.2068 -4.8948 9 1 1.4808 1.4949 -4.9969 10 6 3.6180 1.6087 -5.4301 11 7 3.7797 2.0776 -6.8142 12 6 4.8346 1.7864 -7.6373 13 1 5.7136 1.3024 -7.2380 14 6 4.7742 2.1136 -8.9850 15 7 3.6414 2.5280 -9.5115 16 14 6.3008 1.9656 -10.0514 17 1 6.3116 0.6390 -10.7188 18 1 6.2922 3.0370 -11.0795 19 1 7.5122 2.1029 -9.2034 20 6 2.6178 2.9126 -7.1692 21 6 2.0769 3.4358 -5.8152 22 1 1.0177 3.6832 -5.8870 23 8 2.8336 4.5598 -5.3612 24 7 2.7244 3.3943 -0.6790 25 7 2.7370 3.4234 0.6082 26 7 2.3035 2.1771 1.0825 27 6 2.1660 1.7762 2.4848 28 6 0.7561 2.1117 2.9753 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.7619 3.5197 -3.2914 35 1 4.4548 1.9525 -4.8222 36 1 3.5658 0.5202 -5.4111 37 1 3.5992 2.7569 -10.4532 38 1 1.8602 2.3134 -7.6744 39 1 2.9277 3.7450 -7.8010 40 1 2.7263 5.3520 -5.9053 41 1 2.3360 0.7032 2.5742 42 1 2.8981 2.3116 3.0894 43 1 0.5861 3.1846 2.8858 44 1 0.0240 1.5762 2.3707 45 1 0.6537 1.8129 4.0185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083774254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:58 Heat of formation + Delta-G solvation = 34.836700 kcal Electronic energy + Delta-G solvation = -27950.483073 eV Core-core repulsion = 24006.058864 eV Total energy + Delta-G solvation = -3944.424210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.40368 -39.41096 -37.73936 -36.07869 -34.69052 -34.17634 -33.71737 -31.69922 -30.85234 -30.01651 -28.40297 -27.02051 -25.02961 -24.53845 -24.14952 -23.17237 -20.84575 -20.57320 -20.18393 -19.70947 -18.07810 -17.15621 -16.67253 -16.50166 -15.94028 -15.42432 -15.11093 -14.88485 -14.78955 -14.46915 -14.24778 -14.06978 -13.92567 -13.30420 -13.06617 -12.94397 -12.84923 -12.72261 -12.59402 -12.48522 -12.11894 -11.81492 -11.61451 -11.36752 -11.28187 -11.10255 -10.97268 -10.79394 -10.57637 -10.40459 -10.38238 -10.08419 -9.81469 -9.78902 -9.24153 -9.20138 -8.63927 -8.55464 -6.76542 -5.73258 -3.04363 1.00942 1.73437 1.83172 3.35224 3.42362 3.45308 3.48107 3.51079 3.99224 4.03204 4.34852 4.38254 4.50872 4.55962 4.62151 4.71788 4.85514 4.95970 4.97967 5.14499 5.17980 5.37112 5.41476 5.42031 5.48346 5.50824 5.59013 5.70987 5.76880 5.90419 5.97104 5.97470 6.11185 6.25918 6.31655 6.60570 6.76374 7.00559 7.33131 7.46052 7.73301 7.76575 8.00679 8.15938 8.29267 8.47444 9.20623 9.82539 10.48936 11.40332 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.002712 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.467642 B =10323.508054 C =10481.413732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.125 3.875 4 C -0.098 4.098 5 C 0.600 3.400 6 O -0.542 6.542 7 N -0.691 5.691 8 C 0.143 3.857 9 H 0.105 0.895 10 C 0.131 3.869 11 N -0.595 5.595 12 C -0.221 4.221 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.923 5.923 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.149 3.851 21 C 0.066 3.934 22 H 0.061 0.939 23 O -0.559 6.559 24 N -0.200 5.200 25 N -0.071 5.071 26 N -0.362 5.362 27 C 0.117 3.883 28 C -0.174 4.174 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.252 0.748 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.378 0.622 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -1.467 24.406 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.013 4.013 4 C -0.238 4.238 5 C 0.384 3.616 6 O -0.419 6.419 7 N -0.341 5.341 8 C 0.038 3.962 9 H 0.123 0.877 10 C 0.004 3.996 11 N -0.322 5.322 12 C -0.350 4.350 13 H 0.094 0.906 14 C -0.205 4.205 15 N -0.571 5.571 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.023 3.977 21 C 0.005 3.995 22 H 0.078 0.922 23 O -0.365 6.365 24 N -0.073 5.073 25 N -0.050 5.050 26 N -0.148 5.148 27 C -0.004 4.004 28 C -0.232 4.232 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.226 0.774 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.057 -1.247 24.880 26.182 hybrid contribution 0.494 -0.156 -1.028 1.151 sum -7.564 -1.403 23.852 25.062 Atomic orbital electron populations 1.21725 0.93126 1.02857 1.02340 1.20486 0.97279 0.87279 1.05386 1.21933 0.96746 0.96253 0.86356 1.21297 1.14753 0.92157 0.95572 1.16765 0.77625 0.84745 0.82490 1.90752 1.48071 1.19566 1.83501 1.45637 1.65849 1.17329 1.05266 1.22186 0.99748 0.95777 0.78480 0.87709 1.21607 0.93849 0.96461 0.87665 1.44258 1.22486 1.56517 1.08922 1.19034 0.93068 1.33996 0.88870 0.90605 1.24787 0.97234 1.02175 0.96312 1.69915 1.23559 1.51407 1.12186 0.86105 0.82317 0.77237 0.80131 1.21643 1.21651 1.20624 1.22070 0.89466 0.95647 0.90483 1.23615 0.93509 0.85867 0.96497 0.92168 1.86291 1.71614 1.22324 1.56242 1.74640 1.10497 1.18116 1.04017 1.81973 1.20584 0.98958 1.03504 1.50476 1.45681 1.11281 1.07393 1.21962 1.00132 1.02022 0.76333 1.22262 0.94933 1.03588 1.02378 0.91092 0.93101 0.91414 0.86290 0.90512 0.74738 0.95175 0.95277 0.93739 0.94512 0.90468 0.77446 0.88099 0.87588 0.91216 0.91376 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.90 37.16 0.37 -0.77 16 2 C -0.06 -0.59 5.63 -27.88 -0.16 -0.74 16 3 C 0.12 1.47 6.27 -81.88 -0.51 0.95 16 4 C -0.10 -1.47 6.99 -83.55 -0.58 -2.05 16 5 C 0.60 10.11 7.82 -12.47 -0.10 10.01 16 6 O -0.54 -9.77 14.36 5.28 0.08 -9.69 16 7 N -0.69 -12.01 5.07 -53.07 -0.27 -12.27 16 8 C 0.14 2.74 3.20 -66.10 -0.21 2.53 16 9 H 0.11 1.99 7.55 -51.93 -0.39 1.60 16 10 C 0.13 2.98 6.99 -3.06 -0.02 2.96 16 11 N -0.60 -15.60 3.39 -170.07 -0.58 -16.18 16 12 C -0.22 -6.33 10.24 -15.06 -0.15 -6.48 16 13 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 14 C -0.01 -0.26 5.40 -17.43 -0.09 -0.35 16 15 N -0.92 -26.97 10.68 55.49 0.59 -26.38 16 16 Si 0.91 22.39 29.56 -169.99 -5.03 17.37 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.15 3.53 5.16 -2.53 -0.01 3.52 16 21 C 0.07 1.22 4.28 -24.59 -0.11 1.12 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 O -0.56 -9.92 12.24 -35.23 -0.43 -10.35 16 24 N -0.20 -3.11 12.04 32.85 0.40 -2.71 16 25 N -0.07 -0.98 13.78 60.35 0.83 -0.15 16 26 N -0.36 -3.77 3.63 -56.85 -0.21 -3.98 16 27 C 0.12 0.64 7.02 -4.05 -0.03 0.61 16 28 C -0.17 -0.76 10.24 37.16 0.38 -0.38 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.33 6.12 -51.93 -0.32 0.01 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.12 1.33 6.42 -51.93 -0.33 1.00 16 33 H 0.08 0.46 7.18 -51.93 -0.37 0.09 16 34 H 0.42 7.18 7.28 -40.82 -0.30 6.88 16 35 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.08 1.99 6.94 -51.93 -0.36 1.63 16 40 H 0.38 5.31 9.12 45.56 0.42 5.72 16 41 H 0.10 0.32 7.16 -51.93 -0.37 -0.05 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.33 6.12 -51.93 -0.32 0.01 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -34.54 368.35 -5.98 -40.53 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.69 Total: 7.35 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -1.23 Total: 10.91 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.77 Total: -61.67 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.36 Total: -20.04 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.54 -5.98 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083774254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.366 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds