Wall clock time and date at job start Fri Apr 10 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47053 * 2 1 4 4 C 1.36597 * 126.57565 * 270.02487 * 3 2 1 5 5 C 1.47528 * 125.77398 * 0.03451 * 4 3 2 6 6 O 1.21594 * 119.99566 * 359.71910 * 5 4 3 7 7 N 1.34774 * 120.00245 * 179.71730 * 5 4 3 8 8 C 1.46495 * 119.99954 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.64550 * 31.85499 * 8 7 5 10 10 C 1.54332 * 110.71782 * 268.52246 * 8 7 5 11 11 N 1.47023 * 107.27042 * 219.44402 * 10 8 7 12 12 C 1.36935 * 125.64847 * 178.96188 * 11 10 8 13 13 H 1.07999 * 119.99866 * 349.93564 * 12 11 10 14 14 C 1.38813 * 119.99567 * 169.94045 * 12 11 10 15 15 N 1.31612 * 120.00563 * 350.42002 * 14 12 11 16 16 Si 1.86808 * 119.99594 * 170.42416 * 14 12 11 17 17 H 1.48505 * 109.46851 * 94.13632 * 16 14 12 18 18 H 1.48492 * 109.47053 * 214.13657 * 16 14 12 19 19 H 1.48500 * 109.46994 * 334.13721 * 16 14 12 20 20 C 1.47428 * 108.70231 * 358.94098 * 11 10 8 21 21 C 1.54907 * 104.83214 * 24.12647 * 20 11 10 22 22 H 1.09006 * 111.00307 * 204.91421 * 21 20 11 23 23 O 1.42903 * 111.00519 * 81.06766 * 21 20 11 24 24 N 1.34402 * 108.45800 * 179.77504 * 4 3 2 25 25 N 1.28758 * 109.52395 * 0.22437 * 24 4 3 26 26 N 1.34814 * 126.58432 * 90.18934 * 3 2 1 27 27 C 1.46498 * 126.59624 * 359.96639 * 26 3 2 28 28 C 1.52995 * 109.47436 * 270.27830 * 27 26 3 29 29 H 1.09004 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46846 * 300.00022 * 1 2 3 31 31 H 1.08991 * 109.47306 * 60.00330 * 1 2 3 32 32 H 1.08997 * 109.47057 * 239.99471 * 2 1 3 33 33 H 1.09003 * 109.46958 * 119.99406 * 2 1 3 34 34 H 0.97002 * 119.99569 * 359.97438 * 7 5 4 35 35 H 1.08995 * 109.87785 * 338.85712 * 10 8 7 36 36 H 1.08997 * 109.88114 * 100.02482 * 10 8 7 37 37 H 0.97003 * 120.00613 * 179.97438 * 15 14 12 38 38 H 1.09003 * 110.36432 * 265.29052 * 20 11 10 39 39 H 1.08997 * 110.36770 * 142.96759 * 20 11 10 40 40 H 0.96709 * 114.00001 * 67.79829 * 23 21 20 41 41 H 1.09005 * 109.46653 * 30.27860 * 27 26 3 42 42 H 1.09004 * 109.47462 * 150.27155 * 27 26 3 43 43 H 1.09001 * 109.46834 * 299.99961 * 28 27 26 44 44 H 1.09004 * 109.47346 * 59.99254 * 28 27 26 45 45 H 1.08999 * 109.47277 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1884 -1.0970 5 6 2.1528 1.7671 -2.5028 6 8 1.7611 0.6457 -2.7628 7 7 2.4497 2.6250 -3.4989 8 6 2.2998 2.2068 -4.8948 9 1 1.4808 1.4949 -4.9969 10 6 3.6180 1.6087 -5.4301 11 7 3.7797 2.0776 -6.8142 12 6 4.8346 1.7864 -7.6373 13 1 5.7136 1.3024 -7.2380 14 6 4.7742 2.1136 -8.9850 15 7 3.6414 2.5280 -9.5115 16 14 6.3008 1.9656 -10.0514 17 1 6.3116 0.6390 -10.7188 18 1 6.2922 3.0370 -11.0795 19 1 7.5122 2.1029 -9.2034 20 6 2.6178 2.9126 -7.1692 21 6 2.0769 3.4358 -5.8152 22 1 1.0177 3.6832 -5.8870 23 8 2.8336 4.5598 -5.3612 24 7 2.7244 3.3943 -0.6790 25 7 2.7370 3.4234 0.6082 26 7 2.3035 2.1771 1.0825 27 6 2.1660 1.7762 2.4848 28 6 0.7561 2.1117 2.9753 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.7619 3.5197 -3.2914 35 1 4.4548 1.9525 -4.8222 36 1 3.5658 0.5202 -5.4111 37 1 3.5992 2.7569 -10.4532 38 1 1.8602 2.3134 -7.6744 39 1 2.9277 3.7450 -7.8010 40 1 2.7263 5.3520 -5.9053 41 1 2.3360 0.7032 2.5742 42 1 2.8981 2.3116 3.0894 43 1 0.5861 3.1846 2.8858 44 1 0.0240 1.5762 2.3707 45 1 0.6537 1.8129 4.0185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083774254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:57 Heat of formation + Delta-G solvation = 6.967428 kcal Electronic energy + Delta-G solvation = -27951.691576 eV Core-core repulsion = 24006.058864 eV Total energy + Delta-G solvation = -3945.632712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.37401 -40.85642 -39.30427 -36.84396 -36.38159 -35.46999 -34.69947 -33.60984 -31.56309 -31.12310 -30.12673 -28.74323 -26.54825 -25.52413 -25.05840 -24.26759 -22.44820 -21.90778 -21.28423 -21.12677 -19.39347 -18.78869 -18.23239 -17.48078 -17.01098 -16.80582 -16.76001 -15.98846 -15.88592 -15.75977 -15.50358 -15.41372 -14.76607 -14.65565 -14.57110 -14.31658 -13.94971 -13.77445 -13.63628 -13.41602 -13.16924 -13.12657 -12.88929 -12.74439 -12.73454 -12.32309 -12.28763 -12.14810 -12.01408 -11.94764 -11.88534 -11.84411 -11.23482 -11.11253 -10.82847 -10.73741 -10.33354 -10.00736 -8.87142 -7.90020 -5.24267 0.09504 0.58281 1.07362 1.46031 1.47181 1.57242 2.03652 2.19921 2.49501 3.10158 3.20381 3.30323 3.39405 3.51237 3.63574 3.75114 3.82680 3.94737 3.96802 4.11148 4.24700 4.28966 4.30745 4.42738 4.45254 4.52238 4.66780 4.71748 4.75948 4.87130 4.88264 4.95798 4.99567 5.12798 5.22636 5.36857 5.38657 5.40058 5.47419 5.54265 5.62058 6.16589 6.45506 6.86446 6.92726 7.06820 7.14288 7.71496 8.37506 9.21556 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.002712 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.467642 B =10323.508054 C =10481.413732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C 0.138 3.862 4 C -0.128 4.128 5 C 0.601 3.399 6 O -0.557 6.557 7 N -0.689 5.689 8 C 0.155 3.845 9 H 0.108 0.892 10 C 0.132 3.868 11 N -0.615 5.615 12 C -0.246 4.246 13 H 0.071 0.929 14 C -0.058 4.058 15 N -0.945 5.945 16 Si 0.978 3.022 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.153 3.847 21 C 0.087 3.913 22 H 0.097 0.903 23 O -0.565 6.565 24 N -0.225 5.225 25 N -0.089 5.089 26 N -0.346 5.346 27 C 0.101 3.899 28 C -0.169 4.169 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.417 0.583 35 H 0.020 0.980 36 H 0.017 0.983 37 H 0.251 0.749 38 H 0.015 0.985 39 H 0.052 0.948 40 H 0.396 0.604 41 H 0.134 0.866 42 H 0.119 0.881 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 -2.013 26.967 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.001 4.001 4 C -0.268 4.268 5 C 0.386 3.614 6 O -0.436 6.436 7 N -0.339 5.339 8 C 0.050 3.950 9 H 0.126 0.874 10 C 0.006 3.994 11 N -0.341 5.341 12 C -0.375 4.375 13 H 0.089 0.911 14 C -0.251 4.251 15 N -0.593 5.593 16 Si 0.806 3.194 17 H -0.212 1.212 18 H -0.214 1.214 19 H -0.199 1.199 20 C 0.028 3.972 21 C 0.027 3.973 22 H 0.114 0.886 23 O -0.373 6.373 24 N -0.098 5.098 25 N -0.068 5.068 26 N -0.132 5.132 27 C -0.017 4.017 28 C -0.227 4.227 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.254 0.746 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.246 0.754 41 H 0.152 0.848 42 H 0.137 0.863 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.478 -1.768 27.496 28.828 hybrid contribution 0.618 -0.042 -1.687 1.797 sum -7.860 -1.810 25.809 27.040 Atomic orbital electron populations 1.21711 0.92183 1.03908 1.01851 1.20608 0.97920 0.85479 1.06261 1.22286 0.95060 0.96988 0.85786 1.21175 1.17271 0.93144 0.95242 1.17022 0.76818 0.84308 0.83235 1.90737 1.48704 1.20122 1.83999 1.45527 1.66353 1.17517 1.04542 1.21902 0.97583 0.95893 0.79669 0.87415 1.21638 0.95618 0.95876 0.86306 1.44530 1.22605 1.57171 1.09834 1.19328 0.93914 1.34421 0.89793 0.91081 1.25590 1.00123 1.02042 0.97367 1.70090 1.25164 1.51849 1.12220 0.85084 0.78998 0.77104 0.78207 1.21215 1.21397 1.19899 1.21960 0.88237 0.94173 0.92871 1.23352 0.95023 0.85926 0.93028 0.88576 1.86265 1.71744 1.22761 1.56494 1.74604 1.11482 1.18789 1.04945 1.81861 1.21233 1.00785 1.02915 1.50827 1.43643 1.09846 1.08872 1.22571 1.01320 1.04209 0.73610 1.22260 0.93897 1.02402 1.04117 0.89284 0.91189 0.94309 0.88540 0.86460 0.74585 0.96234 0.96505 0.93990 0.96704 0.92981 0.75418 0.84832 0.86313 0.93041 0.91560 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.90 71.98 0.71 -1.19 16 2 C -0.06 -1.00 5.63 29.85 0.17 -0.83 16 3 C 0.14 3.04 6.27 41.72 0.26 3.30 16 4 C -0.13 -3.82 6.99 40.82 0.29 -3.53 16 5 C 0.60 20.41 7.82 86.69 0.68 21.09 16 6 O -0.56 -20.31 14.36 -4.01 -0.06 -20.37 16 7 N -0.69 -24.09 5.07 -440.09 -2.23 -26.32 16 8 C 0.16 5.99 3.20 46.18 0.15 6.14 16 9 H 0.11 4.12 7.55 -2.39 -0.02 4.10 16 10 C 0.13 6.20 6.99 86.73 0.61 6.81 16 11 N -0.61 -33.15 3.39 -691.98 -2.35 -35.50 16 12 C -0.25 -14.40 10.24 84.03 0.86 -13.54 16 13 H 0.07 4.10 7.85 -2.91 -0.02 4.08 16 14 C -0.06 -3.32 5.40 84.86 0.46 -2.87 16 15 N -0.94 -56.32 10.68 21.65 0.23 -56.09 16 16 Si 0.98 46.56 29.56 68.60 2.03 48.59 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 C 0.15 7.42 5.16 86.85 0.45 7.87 16 21 C 0.09 3.22 4.28 31.98 0.14 3.36 16 22 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 23 O -0.56 -19.61 12.24 -148.98 -1.82 -21.44 16 24 N -0.23 -7.01 12.04 -49.99 -0.60 -7.61 16 25 N -0.09 -2.38 13.78 37.02 0.51 -1.87 16 26 N -0.35 -6.49 3.63 -333.78 -1.21 -7.70 16 27 C 0.10 0.75 7.02 86.38 0.61 1.35 16 28 C -0.17 -0.92 10.24 71.98 0.74 -0.18 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.69 6.12 -2.39 -0.01 0.67 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 2.05 6.42 -2.39 -0.02 2.04 16 33 H 0.12 0.89 7.18 -2.39 -0.02 0.87 16 34 H 0.42 14.45 7.28 -92.71 -0.67 13.77 16 35 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.02 0.78 8.07 -2.39 -0.02 0.76 16 39 H 0.05 2.76 6.94 -2.39 -0.02 2.74 16 40 H 0.40 10.67 9.12 -74.05 -0.68 9.99 16 41 H 0.13 0.18 7.16 -2.38 -0.02 0.16 16 42 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.07 0.41 6.12 -2.39 -0.01 0.39 16 45 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -77.59 368.35 0.29 -77.30 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.31 Total: 23.24 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: 6.11 Total: 27.77 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -5.65 Total: -135.10 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.88 Total: -41.80 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -77.59 0.29 -77.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083774254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.264 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds