Wall clock time and date at job start Fri Apr 10 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36603 * 126.57569 * 2 1 4 4 C 1.47519 * 125.76837 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00531 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99642 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00074 * 180.02562 * 6 4 3 8 8 H 1.09004 * 110.88554 * 37.42252 * 7 6 4 9 9 C 1.54914 * 111.00202 * 273.54598 * 7 6 4 10 10 N 1.47426 * 104.82992 * 204.91694 * 9 7 6 11 11 C 1.36936 * 125.64583 * 204.09666 * 10 9 7 12 12 H 1.08004 * 120.00261 * 0.02562 * 11 10 9 13 13 C 1.38814 * 120.00145 * 180.02562 * 11 10 9 14 14 N 1.31617 * 119.99550 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00112 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47291 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46906 * 120.00302 * 15 13 11 18 18 H 1.48501 * 109.47001 * 239.99832 * 15 13 11 19 19 C 1.47018 * 108.70517 * 24.12623 * 10 9 7 20 20 C 1.54325 * 107.40412 * 358.86539 * 19 10 9 21 21 H 1.09002 * 110.72265 * 219.52294 * 20 19 10 22 22 O 1.42895 * 110.72044 * 96.24103 * 20 19 10 23 23 N 1.34399 * 108.45521 * 180.24599 * 3 2 1 24 24 N 1.28758 * 109.52436 * 359.57991 * 23 3 2 25 25 N 1.34812 * 126.58496 * 179.97438 * 2 1 3 26 26 C 1.46500 * 126.59323 * 0.02562 * 25 2 1 27 27 C 1.53002 * 109.47175 * 119.99749 * 26 25 2 28 28 C 1.53004 * 109.46834 * 239.99786 * 26 25 2 29 29 H 1.08998 * 109.47300 * 89.97919 * 1 2 3 30 30 H 1.08999 * 109.46438 * 209.97221 * 1 2 3 31 31 H 1.08997 * 109.47202 * 329.97374 * 1 2 3 32 32 H 0.96998 * 120.00184 * 359.97438 * 6 4 3 33 33 H 1.08999 * 110.37121 * 86.07429 * 9 7 6 34 34 H 1.09003 * 110.36718 * 323.75334 * 9 7 6 35 35 H 0.97004 * 119.99606 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.88241 * 118.36067 * 19 10 9 37 37 H 1.09000 * 109.88049 * 239.37196 * 19 10 9 38 38 H 0.96706 * 113.99347 * 61.46045 * 22 20 19 39 39 H 1.09002 * 109.46937 * 359.97438 * 26 25 2 40 40 H 1.09000 * 109.46626 * 59.99979 * 27 26 25 41 41 H 1.08997 * 109.46633 * 180.02562 * 27 26 25 42 42 H 1.08995 * 109.46968 * 300.00039 * 27 26 25 43 43 H 1.08997 * 109.46960 * 299.99778 * 28 26 25 44 44 H 1.08999 * 109.46749 * 60.00311 * 28 26 25 45 45 H 1.09004 * 109.46910 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5027 -0.0005 5 8 0.6858 2.7628 -0.0015 6 7 2.7815 3.4988 -0.0010 7 6 2.3373 4.8949 -0.0010 8 1 1.4490 5.0200 0.6183 9 6 2.0831 5.3967 -1.4444 10 7 2.2538 6.8592 -1.3710 11 6 1.7007 7.7713 -2.2296 12 1 1.0780 7.4361 -3.0459 13 6 1.9403 9.1269 -2.0509 14 7 2.6996 9.5354 -1.0565 15 14 1.1864 10.3711 -3.2226 16 1 0.3808 9.6605 -4.2479 17 1 0.3117 11.2998 -2.4627 18 1 2.2669 11.1421 -3.8883 19 6 3.1168 7.1762 -0.2237 20 6 3.4769 5.8430 0.4653 21 1 3.4694 5.9548 1.5495 22 8 4.7462 5.3671 0.0134 23 7 3.5984 0.6790 -0.0055 24 7 3.6299 -0.6082 0.0000 25 7 2.3105 -1.0825 0.0005 26 6 1.8866 -2.4848 0.0006 27 6 2.4298 -3.1820 -1.2484 28 6 2.4290 -3.1815 1.2502 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 3.7291 3.2914 -0.0006 33 1 1.0696 5.1484 -1.7595 34 1 2.8113 4.9637 -2.1303 35 1 2.8673 10.4827 -0.9318 36 1 4.0242 7.6723 -0.5683 37 1 2.5836 7.8218 0.4740 38 1 5.4822 5.9630 0.2093 39 1 0.7977 -2.5352 0.0007 40 1 3.5186 -3.1315 -1.2480 41 1 2.1139 -4.2252 -1.2484 42 1 2.0434 -2.6856 -2.1385 43 1 3.5178 -3.1311 1.2505 44 1 2.0420 -2.6848 2.1399 45 1 2.1132 -4.2248 1.2505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083898944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:05 Heat of formation + Delta-G solvation = 8.005839 kcal Electronic energy + Delta-G solvation = -27713.844145 eV Core-core repulsion = 23768.256462 eV Total energy + Delta-G solvation = -3945.587683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.34301 -40.84954 -39.32561 -37.36212 -36.45566 -35.49390 -33.98539 -33.60527 -31.99828 -30.31237 -29.17405 -28.36789 -28.26657 -26.44476 -25.01388 -24.14732 -22.36694 -21.70528 -21.47735 -20.91373 -19.29444 -18.60014 -18.27681 -17.41030 -17.24301 -16.86174 -16.71314 -15.89065 -15.75719 -15.60423 -15.31842 -15.17537 -14.76137 -14.53242 -14.36292 -14.20196 -14.01757 -13.96674 -13.91152 -13.23801 -13.18909 -13.17782 -12.96738 -12.81788 -12.75688 -12.52183 -12.40990 -12.27588 -12.06350 -11.95350 -11.88450 -11.84845 -11.16976 -11.11765 -10.87734 -10.76859 -10.31301 -9.98273 -8.94383 -7.87786 -5.23675 0.11697 0.60607 1.05019 1.46423 1.47314 1.58003 2.03406 2.21183 2.49552 3.10880 3.20321 3.31321 3.32844 3.54480 3.63591 3.75282 3.82149 3.86336 3.95695 3.98983 4.12277 4.26354 4.44699 4.56379 4.61655 4.64602 4.65087 4.67339 4.72343 4.76416 4.84493 4.86954 5.00684 5.16610 5.19299 5.23926 5.36219 5.43306 5.48338 5.58741 5.65361 6.14920 6.46791 6.85143 6.93846 7.07222 7.15734 7.71048 8.35338 9.22568 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026862 B = 0.002602 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.111064 B =10758.164708 C =11253.661968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.133 3.867 3 C -0.131 4.131 4 C 0.601 3.399 5 O -0.560 6.560 6 N -0.688 5.688 7 C 0.153 3.847 8 H 0.101 0.899 9 C 0.134 3.866 10 N -0.621 5.621 11 C -0.244 4.244 12 H 0.078 0.922 13 C -0.062 4.062 14 N -0.949 5.949 15 Si 0.981 3.019 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.290 1.290 19 C 0.161 3.839 20 C 0.089 3.911 21 H 0.094 0.906 22 O -0.567 6.567 23 N -0.225 5.225 24 N -0.083 5.083 25 N -0.345 5.345 26 C 0.131 3.869 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.418 0.582 33 H 0.036 0.964 34 H 0.018 0.982 35 H 0.249 0.751 36 H 0.026 0.974 37 H 0.029 0.971 38 H 0.398 0.602 39 H 0.143 0.857 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 -28.151 5.954 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.006 4.006 3 C -0.270 4.270 4 C 0.387 3.613 5 O -0.439 6.439 6 N -0.339 5.339 7 C 0.047 3.953 8 H 0.119 0.881 9 C 0.007 3.993 10 N -0.347 5.347 11 C -0.373 4.373 12 H 0.096 0.904 13 C -0.255 4.255 14 N -0.598 5.598 15 Si 0.809 3.191 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.217 1.217 19 C 0.035 3.965 20 C 0.029 3.971 21 H 0.111 0.889 22 O -0.376 6.376 23 N -0.098 5.098 24 N -0.063 5.063 25 N -0.132 5.132 26 C 0.032 3.968 27 C -0.217 4.217 28 C -0.217 4.217 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.255 0.745 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.248 0.752 39 H 0.160 0.840 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.989 -28.700 5.715 29.331 hybrid contribution -0.178 1.867 -0.515 1.945 sum -2.167 -26.833 5.200 27.418 Atomic orbital electron populations 1.20843 0.82404 1.06301 1.05676 1.22325 0.97436 0.85760 0.95122 1.21145 0.89770 0.95093 1.21035 1.17023 0.85324 0.83256 0.75727 1.90745 1.16565 1.84073 1.52512 1.45455 1.10821 1.04472 1.73111 1.22091 0.96713 0.79500 0.97005 0.88128 1.21849 0.97809 0.84420 0.95223 1.44568 1.57425 1.00695 1.32057 1.19455 1.24081 0.87281 1.06448 0.90440 1.25628 1.00927 0.98499 1.00472 1.70121 1.42740 1.14074 1.32824 0.84970 0.77397 0.78659 0.78046 1.19387 1.21518 1.21688 1.21726 0.93904 0.92373 0.88478 1.23247 0.83580 0.92575 0.97676 0.88881 1.86247 1.16715 1.50400 1.84209 1.74610 1.19673 1.04964 1.10595 1.81806 0.98170 1.02724 1.23557 1.50976 1.05106 1.08498 1.48613 1.22227 1.02498 0.73000 0.99104 1.22167 1.02038 1.02525 0.95015 1.22170 1.02064 1.02510 0.94949 0.87874 0.86882 0.88702 0.74495 0.94606 0.96458 0.94124 0.95544 0.95272 0.75161 0.83969 0.92474 0.86770 0.92473 0.92466 0.92218 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.41 71.24 0.67 -0.73 16 2 C 0.13 2.93 7.02 41.72 0.29 3.22 16 3 C -0.13 -3.88 6.99 40.82 0.29 -3.59 16 4 C 0.60 20.54 7.82 86.69 0.68 21.22 16 5 O -0.56 -20.88 14.46 -4.01 -0.06 -20.94 16 6 N -0.69 -23.97 5.18 -438.69 -2.27 -26.24 16 7 C 0.15 5.98 3.20 46.47 0.15 6.12 16 8 H 0.10 4.02 7.73 -2.39 -0.02 4.00 16 9 C 0.13 6.23 6.92 86.86 0.60 6.83 16 10 N -0.62 -33.43 3.39 -691.97 -2.35 -35.78 16 11 C -0.24 -14.22 10.28 84.03 0.86 -13.35 16 12 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 13 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 14 N -0.95 -56.65 10.31 21.65 0.22 -56.43 16 15 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 C 0.16 7.86 5.13 86.73 0.44 8.30 16 20 C 0.09 3.33 4.22 31.87 0.13 3.46 16 21 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 22 O -0.57 -19.10 12.15 -148.98 -1.81 -20.91 16 23 N -0.23 -6.94 12.04 -49.99 -0.60 -7.54 16 24 N -0.08 -2.21 13.67 37.02 0.51 -1.70 16 25 N -0.34 -6.59 3.28 -313.37 -1.03 -7.62 16 26 C 0.13 1.17 3.68 44.99 0.17 1.34 16 27 C -0.16 -1.27 9.47 71.98 0.68 -0.59 16 28 C -0.16 -1.16 9.47 71.98 0.68 -0.48 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 0.73 7.18 -2.39 -0.02 0.71 16 31 H 0.09 1.89 6.43 -2.39 -0.02 1.87 16 32 H 0.42 14.14 7.25 -92.71 -0.67 13.47 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.03 1.42 7.42 -2.39 -0.02 1.40 16 37 H 0.03 1.57 7.37 -2.39 -0.02 1.55 16 38 H 0.40 10.40 9.09 -74.05 -0.67 9.73 16 39 H 0.14 0.38 6.79 -2.39 -0.02 0.36 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 Total: -1.00 -77.13 371.27 0.43 -76.70 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.32 Total: 23.23 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 6.11 Total: 28.64 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -5.52 Total: -135.31 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.87 Total: -41.85 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -77.13 0.43 -76.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083898944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.706 kcal (2) G-P(sol) polarization free energy of solvation -77.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds