Wall clock time and date at job start Fri Apr 10 2020 18:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00155 * 2 1 4 4 C 1.50701 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66263 * 90.26049 * 4 3 2 6 6 C 1.42275 * 103.92312 * 180.11024 * 5 4 3 7 7 C 1.48324 * 126.94207 * 179.91102 * 6 5 4 8 8 O 1.21503 * 119.99783 * 359.70800 * 7 6 5 9 9 N 1.34773 * 120.00209 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00093 * 179.71998 * 9 7 6 11 11 C 1.53005 * 109.46901 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.01298 * 305.06257 * 11 10 9 13 13 C 1.53869 * 110.03132 * 66.45886 * 11 10 9 14 14 C 1.54268 * 106.59835 * 119.28613 * 13 11 10 15 15 C 1.54888 * 104.19568 * 23.60406 * 14 13 11 16 16 H 1.08999 * 110.75391 * 80.37510 * 15 14 13 17 17 N 1.46497 * 110.75428 * 203.56134 * 15 14 13 18 18 C 1.36948 * 119.99869 * 273.54702 * 17 15 14 19 19 H 1.07993 * 119.99654 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99545 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99564 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00424 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47159 * 89.99844 * 22 20 18 24 24 H 1.48502 * 109.47289 * 209.99919 * 22 20 18 25 25 H 1.48497 * 109.47348 * 330.00013 * 22 20 18 26 26 C 1.54263 * 110.02804 * 183.62740 * 11 10 9 27 27 N 1.30988 * 106.11941 * 359.64842 * 6 5 4 28 28 O 1.20907 * 111.43783 * 0.22329 * 27 6 5 29 29 H 1.08996 * 109.47087 * 300.00330 * 1 2 3 30 30 H 1.08997 * 109.47112 * 60.00054 * 1 2 3 31 31 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46850 * 59.99832 * 3 2 1 33 33 H 1.09000 * 109.47302 * 299.99827 * 3 2 1 34 34 H 1.08006 * 128.04493 * 0.02562 * 5 4 3 35 35 H 0.97000 * 120.00112 * 359.72885 * 9 7 6 36 36 H 1.08995 * 109.47192 * 300.00565 * 10 9 7 37 37 H 1.09001 * 109.46711 * 60.00587 * 10 9 7 38 38 H 1.09006 * 110.02936 * 238.56738 * 13 11 10 39 39 H 1.09000 * 110.03646 * 359.97438 * 13 11 10 40 40 H 1.08998 * 110.48498 * 142.28878 * 14 13 11 41 41 H 1.09005 * 110.48321 * 264.79963 * 14 13 11 42 42 H 0.96999 * 120.00535 * 93.55298 * 17 15 14 43 43 H 0.97001 * 119.99849 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.49069 * 335.78071 * 26 11 10 45 45 H 1.08996 * 110.49026 * 98.42600 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.3188 1.1273 -1.0845 6 6 5.6263 1.0186 -0.5340 7 6 6.9030 0.9178 -1.2822 8 8 6.8967 0.9180 -2.4972 9 7 8.0696 0.8207 -0.6144 10 6 9.3301 0.7149 -1.3535 11 6 10.4941 0.6175 -0.3652 12 1 10.4692 1.4609 0.3249 13 6 10.4127 -0.7055 0.4162 14 6 11.7068 -1.4839 0.1009 15 6 12.7164 -0.3874 -0.3204 16 1 13.1411 0.1036 0.5552 17 7 13.7751 -0.9519 -1.1611 18 6 14.8857 -1.5067 -0.5831 19 1 14.9809 -1.5284 0.4924 20 6 15.8890 -2.0411 -1.3797 21 7 16.9568 -2.5739 -0.8242 22 14 15.7246 -2.0028 -3.2400 23 1 16.3198 -0.7473 -3.7639 24 1 16.4353 -3.1688 -3.8239 25 1 14.2880 -2.0621 -3.6114 26 6 11.8347 0.5970 -1.1281 27 7 5.4753 1.0313 0.7671 28 8 4.3099 1.1239 1.0758 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 4.0357 1.1547 -2.1264 35 1 8.0746 0.8206 0.3556 36 1 9.3102 -0.1767 -1.9800 37 1 9.4585 1.5970 -1.9808 38 1 10.3492 -0.5042 1.4856 39 1 9.5438 -1.2780 0.0918 40 1 12.0617 -2.0090 0.9877 41 1 11.5402 -2.1860 -0.7160 42 1 13.6894 -0.9327 -2.1271 43 1 17.6577 -2.9476 -1.3809 44 1 11.6894 0.2326 -2.1451 45 1 12.2831 1.5904 -1.1384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086822587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:21 Heat of formation + Delta-G solvation = -35.684054 kcal Electronic energy + Delta-G solvation = -26162.346265 eV Core-core repulsion = 22182.571295 eV Total energy + Delta-G solvation = -3979.774970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.26935 -40.98831 -39.53085 -38.91727 -36.54323 -35.32058 -35.02849 -33.78858 -32.99428 -30.51806 -29.13748 -28.73084 -26.82023 -26.45134 -24.95541 -24.42299 -23.72851 -21.77152 -21.09946 -20.62956 -19.57029 -19.06513 -19.02458 -18.01456 -17.39488 -17.22590 -16.86690 -16.71492 -16.68138 -16.22919 -16.09090 -15.88096 -15.10967 -14.83470 -14.76598 -14.46110 -14.27634 -14.10888 -13.83448 -13.46800 -13.22516 -13.11245 -12.72538 -12.66754 -12.39619 -12.37705 -12.12630 -12.01854 -11.88269 -11.78136 -11.66974 -11.63833 -11.46111 -11.30103 -10.95034 -10.76852 -10.71273 -10.30666 -9.28944 -8.02848 -5.35577 -0.11352 0.43887 1.37367 1.40168 1.47404 1.66654 1.82802 1.93962 2.47894 2.75354 2.98065 3.27737 3.43257 3.53911 3.60374 3.72879 3.78796 3.99864 4.07190 4.10103 4.31376 4.39524 4.40918 4.50113 4.56928 4.57455 4.57765 4.66335 4.71047 4.72228 4.76641 4.82018 4.96213 5.01796 5.04605 5.13002 5.18566 5.38580 5.47510 5.53089 5.77968 6.09843 6.18508 6.22444 6.78598 6.90421 7.08284 7.86037 8.04088 9.18816 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.001847 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.163193 B =15157.273924 C =15368.133740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.142 3.858 4 C -0.025 4.025 5 C -0.165 4.165 6 C -0.046 4.046 7 C 0.596 3.404 8 O -0.556 6.556 9 N -0.700 5.700 10 C 0.131 3.869 11 C -0.086 4.086 12 H 0.101 0.899 13 C -0.111 4.111 14 C -0.140 4.140 15 C 0.167 3.833 16 H 0.053 0.947 17 N -0.749 5.749 18 C -0.229 4.229 19 H 0.056 0.944 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.254 1.254 26 C -0.115 4.115 27 N -0.334 5.334 28 O 0.135 5.865 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.196 0.804 35 H 0.416 0.584 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.068 0.932 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.394 12.514 2.147 40.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C 0.065 3.935 4 C -0.088 4.088 5 C -0.188 4.188 6 C -0.204 4.204 7 C 0.380 3.620 8 O -0.433 6.433 9 N -0.351 5.351 10 C 0.008 3.992 11 C -0.105 4.105 12 H 0.120 0.880 13 C -0.149 4.149 14 C -0.180 4.180 15 C 0.059 3.941 16 H 0.071 0.929 17 N -0.392 5.392 18 C -0.360 4.360 19 H 0.074 0.926 20 C -0.257 4.257 21 N -0.636 5.636 22 Si 0.782 3.218 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.179 1.179 26 C -0.154 4.154 27 N -0.033 5.033 28 O 0.055 5.945 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.213 0.787 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -37.179 12.217 2.426 39.210 hybrid contribution 0.341 -0.412 -1.245 1.355 sum -36.839 11.805 1.181 38.702 Atomic orbital electron populations 1.23003 0.77869 1.04173 1.01903 1.87926 1.22549 1.27325 1.95903 1.20988 0.80545 0.86114 1.05831 1.24511 0.96386 1.03397 0.84541 1.22742 0.89038 1.04318 1.02687 1.23489 0.97058 1.09317 0.90546 1.17042 0.82274 0.76613 0.86068 1.90800 1.87029 1.51645 1.13800 1.45841 1.05488 1.72333 1.11435 1.21570 0.80954 1.02383 0.94323 1.21844 0.92571 0.99285 0.96821 0.88035 1.22153 0.96859 0.95217 1.00697 1.22887 0.96179 0.98839 1.00085 1.21423 0.87042 0.92410 0.93234 0.92914 1.42752 1.20146 1.71677 1.04602 1.19053 0.95367 1.29215 0.92381 0.92590 1.25496 0.96364 1.01165 1.02641 1.69888 1.10675 1.46938 1.36055 0.85410 0.78407 0.77140 0.80824 1.20304 1.22428 1.17850 1.22501 0.94005 0.99861 0.99046 1.74188 0.98218 1.15435 1.15418 1.84761 1.11166 1.64659 1.33932 0.92048 0.92005 0.88945 0.87938 0.86487 0.78665 0.74750 0.91850 0.90538 0.90251 0.91592 0.93734 0.93319 0.80178 0.93426 0.91357 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 11.01 113.37 1.25 1.34 16 2 O -0.42 -4.43 10.69 -148.98 -1.59 -6.02 16 3 C 0.14 0.81 6.50 71.24 0.46 1.27 16 4 C -0.03 -0.33 7.10 25.01 0.18 -0.15 16 5 C -0.17 -2.69 10.92 22.60 0.25 -2.44 16 6 C -0.05 -0.98 7.19 42.96 0.31 -0.67 16 7 C 0.60 14.65 7.85 86.93 0.68 15.33 16 8 O -0.56 -17.00 16.95 -3.73 -0.06 -17.06 16 9 N -0.70 -14.54 5.29 -465.49 -2.46 -17.00 16 10 C 0.13 2.83 4.70 86.38 0.41 3.23 16 11 C -0.09 -1.84 2.98 -10.07 -0.03 -1.87 16 12 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 13 C -0.11 -2.65 6.13 31.32 0.19 -2.46 16 14 C -0.14 -4.68 6.51 31.67 0.21 -4.48 16 15 C 0.17 6.15 3.53 46.28 0.16 6.31 16 16 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 17 N -0.75 -35.08 5.06 -316.85 -1.60 -36.69 16 18 C -0.23 -13.21 10.46 84.03 0.88 -12.33 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 21 N -0.98 -64.04 13.97 21.65 0.30 -63.73 16 22 Si 0.95 46.33 27.74 68.60 1.90 48.23 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 25 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 26 C -0.12 -3.15 5.97 31.67 0.19 -2.96 16 27 N -0.33 -6.70 11.84 -49.51 -0.59 -7.28 16 28 O 0.13 2.25 11.18 71.95 0.80 3.05 16 29 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.12 0.04 8.14 -2.39 -0.02 0.03 16 34 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.42 7.30 8.07 -92.71 -0.75 6.55 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.36 16.44 5.59 -92.71 -0.52 15.92 16 43 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 44 H 0.07 1.90 7.74 -2.39 -0.02 1.88 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -77.26 379.03 1.99 -75.27 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.31 Total: 24.55 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.60 Total: -3.31 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -4.35 Total: -124.71 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.85 Total: -20.03 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -77.26 1.99 -75.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086822587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.587 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds