Wall clock time and date at job start Fri Apr 10 2020 18:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08996 * 109.63354 * 35.66885 * 10 9 7 12 12 C 1.53436 * 109.63221 * 156.26735 * 10 9 7 13 13 C 1.53112 * 109.31855 * 192.04471 * 12 10 9 14 14 C 1.52456 * 109.69044 * 282.96893 * 13 12 10 15 15 C 1.53491 * 109.13010 * 316.07012 * 14 13 12 16 16 C 1.53612 * 108.46570 * 114.21513 * 15 14 13 17 17 N 1.47136 * 107.51614 * 290.23979 * 16 15 14 18 18 C 1.34781 * 120.18772 * 252.10816 * 17 16 15 19 19 O 1.21280 * 120.00300 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.99657 * 0.02562 * 18 17 16 21 21 N 1.46500 * 109.47006 * 180.02562 * 20 18 17 22 22 C 1.36609 * 127.11566 * 265.01988 * 21 20 18 23 23 N 1.30335 * 107.27654 * 179.97438 * 22 21 20 24 24 N 1.28532 * 109.99774 * 0.02562 * 23 22 21 25 25 C 1.31037 * 109.85724 * 359.71843 * 24 23 22 26 26 O 1.35540 * 126.44513 * 180.29855 * 25 24 23 27 27 C 1.46058 * 119.62734 * 72.12646 * 17 16 15 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.49273 * 311.99551 * 12 10 9 31 31 H 1.09000 * 109.49745 * 72.09214 * 12 10 9 32 32 H 1.08997 * 109.43381 * 162.90097 * 13 12 10 33 33 H 1.09006 * 109.40179 * 43.01420 * 13 12 10 34 34 H 1.08990 * 109.53334 * 196.17277 * 14 13 12 35 35 H 1.09002 * 109.58257 * 75.99176 * 14 13 12 36 36 H 1.09001 * 109.64464 * 354.52081 * 15 14 13 37 37 H 1.09006 * 109.80754 * 234.00884 * 15 14 13 38 38 H 1.08995 * 109.85581 * 170.73555 * 16 15 14 39 39 H 1.09001 * 109.90569 * 49.76688 * 16 15 14 40 40 H 1.09001 * 109.47144 * 299.99499 * 20 18 17 41 41 H 1.08997 * 109.47705 * 59.99398 * 20 18 17 42 42 H 1.07994 * 126.35983 * 0.04245 * 22 21 20 43 43 H 0.96696 * 114.00103 * 270.16790 * 26 25 24 44 44 H 1.09000 * 109.36406 * 126.74429 * 27 17 16 45 45 H 1.08999 * 109.36614 * 7.13448 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 2.9656 -3.5583 0.5902 12 6 1.1722 -4.7660 0.5775 13 6 2.0271 -6.0070 0.8484 14 6 2.3074 -6.7338 -0.4622 15 6 1.0147 -6.8002 -1.2870 16 6 1.2037 -5.9566 -2.5567 17 7 1.2498 -4.5441 -2.1471 18 6 0.2135 -3.7259 -2.4174 19 8 0.2553 -2.5621 -2.0786 20 6 -0.9972 -4.2572 -3.1406 21 7 -1.9750 -3.1798 -3.3127 22 6 -3.0373 -2.8936 -2.5029 23 7 -3.6472 -1.8618 -3.0147 24 7 -3.0454 -1.4818 -4.0850 25 6 -2.0098 -2.2521 -4.3107 26 8 -1.1386 -2.1477 -5.3438 27 6 2.4252 -4.0336 -1.4462 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 0.7246 -4.4220 1.5099 31 1 0.3852 -5.0147 -0.1345 32 1 1.4939 -6.6738 1.5260 33 1 2.9700 -5.7048 1.3043 34 1 2.6572 -7.7442 -0.2510 35 1 3.0702 -6.1939 -1.0234 36 1 0.1859 -6.4013 -0.7021 37 1 0.8047 -7.8339 -1.5619 38 1 0.3668 -6.1177 -3.2362 39 1 2.1374 -6.2299 -3.0483 40 1 -0.6992 -4.6363 -4.1181 41 1 -1.4432 -5.0637 -2.5587 42 1 -3.3186 -3.4233 -1.6048 43 1 -1.3937 -2.6553 -6.1263 44 1 2.8011 -3.1521 -1.9655 45 1 3.1996 -4.8006 -1.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088298576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:40 Heat of formation + Delta-G solvation = 73.109825 kcal Electronic energy + Delta-G solvation = -29998.452695 eV Core-core repulsion = 26055.688132 eV Total energy + Delta-G solvation = -3942.764563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.72625 -40.23364 -37.59191 -37.41056 -34.96410 -34.35166 -33.71921 -31.89629 -29.57030 -29.46274 -28.87217 -26.64181 -26.37023 -23.75392 -22.87059 -22.32869 -22.13026 -20.71148 -20.10915 -18.79320 -18.29864 -17.16909 -16.87264 -16.72643 -16.04975 -15.47933 -15.35258 -15.19427 -14.89212 -14.59223 -14.16883 -13.98882 -13.71666 -13.40752 -13.22398 -12.91757 -12.77832 -12.24608 -12.00893 -11.88306 -11.79319 -11.69497 -11.36344 -10.97721 -10.90430 -10.69170 -10.66703 -10.43385 -10.37156 -10.15755 -10.10312 -9.99653 -9.70634 -9.36098 -9.08615 -8.88371 -8.71603 -8.15195 -6.56906 -5.46652 -2.72598 1.83936 2.25636 3.04603 3.10927 3.31664 3.57282 3.61807 3.64390 3.87577 4.49753 4.53381 4.65887 4.77670 4.80828 4.81776 4.82698 5.01633 5.21477 5.30405 5.33286 5.47136 5.50693 5.64635 5.66917 5.74322 5.80888 5.85354 5.97560 6.10195 6.10369 6.13669 6.20209 6.27140 6.35136 6.58496 6.67685 6.69249 6.77514 6.88256 7.12718 7.47855 7.76119 7.88475 8.66145 8.75994 8.94105 9.81611 10.41900 10.74835 11.74715 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.007732 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.348567 B = 3620.585989 C = 6214.286798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.002 4.002 3 Si 0.894 3.106 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.235 4.235 8 H 0.060 0.940 9 N -0.700 5.700 10 C 0.165 3.835 11 H 0.051 0.949 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.127 4.127 15 C -0.147 4.147 16 C 0.106 3.894 17 N -0.606 5.606 18 C 0.460 3.540 19 O -0.416 6.416 20 C 0.090 3.910 21 N -0.467 5.467 22 C 0.182 3.818 23 N -0.280 5.280 24 N -0.287 5.287 25 C 0.361 3.639 26 O -0.432 6.432 27 C 0.093 3.907 28 H 0.250 0.750 29 H 0.385 0.615 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.221 0.779 43 H 0.396 0.604 44 H 0.066 0.934 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -21.480 -7.205 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.726 3.274 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.367 4.367 8 H 0.078 0.922 9 N -0.341 5.341 10 C 0.053 3.947 11 H 0.069 0.931 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.165 4.165 15 C -0.186 4.186 16 C -0.018 4.018 17 N -0.344 5.344 18 C 0.241 3.759 19 O -0.281 6.281 20 C -0.038 4.038 21 N -0.170 5.170 22 C -0.105 4.105 23 N -0.121 5.121 24 N -0.138 5.138 25 C 0.056 3.944 26 O -0.230 6.230 27 C -0.032 4.032 28 H 0.060 0.940 29 H 0.221 0.779 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.237 0.763 43 H 0.252 0.748 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.629 -19.100 -6.928 20.327 hybrid contribution 1.293 -0.593 -0.284 1.451 sum 0.664 -19.693 -7.212 20.983 Atomic orbital electron populations 1.69643 1.04765 1.24882 1.56794 1.24598 0.95253 0.96932 1.03134 0.86488 0.78592 0.84934 0.77362 1.21782 1.21930 1.21734 1.18938 0.90194 0.84408 1.43145 0.92223 1.42348 1.05671 0.98759 1.87325 1.20782 0.94859 0.87097 0.91983 0.93091 1.22182 0.99040 0.94752 1.01047 1.21468 1.00291 0.96932 0.96579 1.21876 0.97613 0.99906 0.97058 1.22490 0.99642 0.99309 0.97125 1.21947 1.02022 0.81764 0.96044 1.47856 1.18553 1.08847 1.59168 1.20476 0.84337 0.88175 0.82891 1.91269 1.77394 1.14272 1.45168 1.21775 0.89766 0.88667 1.03576 1.46387 1.23162 1.25275 1.22202 1.26214 0.86879 0.98604 0.98795 1.74154 1.24274 1.09247 1.04381 1.74532 1.05340 1.21462 1.12428 1.21977 0.93138 0.90206 0.89038 1.85038 1.43993 1.71340 1.22592 1.22763 0.85572 0.98057 0.96836 0.94031 0.77871 0.92346 0.91274 0.92796 0.92085 0.92683 0.90821 0.90139 0.91683 0.90946 0.90917 0.87140 0.86413 0.76316 0.74812 0.91543 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.52 13.06 55.49 0.72 -28.79 16 2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 3 Si 0.89 24.21 29.55 -169.99 -5.02 19.19 16 4 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 5 H -0.29 -8.10 7.11 56.52 0.40 -7.70 16 6 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.24 -6.78 9.78 -15.06 -0.15 -6.93 16 8 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 9 N -0.70 -17.57 3.04 -53.00 -0.16 -17.73 16 10 C 0.16 3.10 2.68 -67.49 -0.18 2.92 16 11 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 12 C -0.13 -2.00 4.92 -26.45 -0.13 -2.13 16 13 C -0.11 -1.31 5.67 -26.95 -0.15 -1.46 16 14 C -0.13 -1.16 5.48 -26.75 -0.15 -1.31 16 15 C -0.15 -1.17 5.59 -26.16 -0.15 -1.31 16 16 C 0.11 0.87 5.83 -3.38 -0.02 0.86 16 17 N -0.61 -8.11 1.72 -172.90 -0.30 -8.41 16 18 C 0.46 7.48 6.92 -10.98 -0.08 7.41 16 19 O -0.42 -9.79 12.60 5.56 0.07 -9.72 16 20 C 0.09 1.00 5.04 -5.19 -0.03 0.98 16 21 N -0.47 -7.01 2.29 -121.04 -0.28 -7.29 16 22 C 0.18 2.88 12.80 -89.06 -1.14 1.74 16 23 N -0.28 -5.47 12.18 29.87 0.36 -5.11 16 24 N -0.29 -5.82 12.22 29.65 0.36 -5.45 16 25 C 0.36 6.28 9.22 -88.76 -0.82 5.47 16 26 O -0.43 -6.34 13.62 -18.31 -0.25 -6.59 16 27 C 0.09 1.50 4.92 -4.06 -0.02 1.48 16 28 H 0.25 8.07 8.31 -40.82 -0.34 7.74 16 29 H 0.39 10.64 6.34 -40.82 -0.26 10.38 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.00 3.68 -51.93 -0.19 0.80 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.72 4.49 -51.93 -0.23 0.48 16 36 H 0.08 0.74 5.45 -51.93 -0.28 0.46 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.41 5.98 -51.93 -0.31 0.10 16 39 H 0.07 0.54 7.97 -51.93 -0.41 0.13 16 40 H 0.11 0.87 7.59 -51.93 -0.39 0.48 16 41 H 0.12 0.88 8.01 -51.93 -0.42 0.47 16 42 H 0.22 2.51 8.06 -52.49 -0.42 2.09 16 43 H 0.40 2.97 9.06 45.56 0.41 3.39 16 44 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 45 H 0.07 0.89 5.07 -51.93 -0.26 0.63 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -40.95 350.11 -7.56 -48.50 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.24 Total: 8.57 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -3.10 Total: 7.55 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: 0.72 Total: -72.79 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.18 Total: -16.30 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.02 Total: 19.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -40.95 -7.56 -48.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088298576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.612 kcal (2) G-P(sol) polarization free energy of solvation -40.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds