Wall clock time and date at job start Fri Apr 10 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08996 * 109.63354 * 35.66885 * 10 9 7 12 12 C 1.53436 * 109.63221 * 156.26735 * 10 9 7 13 13 C 1.53112 * 109.31855 * 192.04471 * 12 10 9 14 14 C 1.52456 * 109.69044 * 282.96893 * 13 12 10 15 15 C 1.53491 * 109.13010 * 316.07012 * 14 13 12 16 16 C 1.53612 * 108.46570 * 114.21513 * 15 14 13 17 17 N 1.47136 * 107.51614 * 290.23979 * 16 15 14 18 18 C 1.34781 * 120.18772 * 252.10816 * 17 16 15 19 19 O 1.21280 * 120.00300 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.99657 * 0.02562 * 18 17 16 21 21 N 1.46500 * 109.47006 * 180.02562 * 20 18 17 22 22 C 1.36609 * 127.11566 * 265.01988 * 21 20 18 23 23 N 1.30335 * 107.27654 * 179.97438 * 22 21 20 24 24 N 1.28532 * 109.99774 * 0.02562 * 23 22 21 25 25 C 1.31037 * 109.85724 * 359.71843 * 24 23 22 26 26 O 1.35540 * 126.44513 * 180.29855 * 25 24 23 27 27 C 1.46058 * 119.62734 * 72.12646 * 17 16 15 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.49273 * 311.99551 * 12 10 9 31 31 H 1.09000 * 109.49745 * 72.09214 * 12 10 9 32 32 H 1.08997 * 109.43381 * 162.90097 * 13 12 10 33 33 H 1.09006 * 109.40179 * 43.01420 * 13 12 10 34 34 H 1.08990 * 109.53334 * 196.17277 * 14 13 12 35 35 H 1.09002 * 109.58257 * 75.99176 * 14 13 12 36 36 H 1.09001 * 109.64464 * 354.52081 * 15 14 13 37 37 H 1.09006 * 109.80754 * 234.00884 * 15 14 13 38 38 H 1.08995 * 109.85581 * 170.73555 * 16 15 14 39 39 H 1.09001 * 109.90569 * 49.76688 * 16 15 14 40 40 H 1.09001 * 109.47144 * 299.99499 * 20 18 17 41 41 H 1.08997 * 109.47705 * 59.99398 * 20 18 17 42 42 H 1.07994 * 126.35983 * 0.04245 * 22 21 20 43 43 H 0.96696 * 114.00103 * 270.16790 * 26 25 24 44 44 H 1.09000 * 109.36406 * 126.74429 * 27 17 16 45 45 H 1.08999 * 109.36614 * 7.13448 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 2.9656 -3.5583 0.5902 12 6 1.1722 -4.7660 0.5775 13 6 2.0271 -6.0070 0.8484 14 6 2.3074 -6.7338 -0.4622 15 6 1.0147 -6.8002 -1.2870 16 6 1.2037 -5.9566 -2.5567 17 7 1.2498 -4.5441 -2.1471 18 6 0.2135 -3.7259 -2.4174 19 8 0.2553 -2.5621 -2.0786 20 6 -0.9972 -4.2572 -3.1406 21 7 -1.9750 -3.1798 -3.3127 22 6 -3.0373 -2.8936 -2.5029 23 7 -3.6472 -1.8618 -3.0147 24 7 -3.0454 -1.4818 -4.0850 25 6 -2.0098 -2.2521 -4.3107 26 8 -1.1386 -2.1477 -5.3438 27 6 2.4252 -4.0336 -1.4462 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 0.7246 -4.4220 1.5099 31 1 0.3852 -5.0147 -0.1345 32 1 1.4939 -6.6738 1.5260 33 1 2.9700 -5.7048 1.3043 34 1 2.6572 -7.7442 -0.2510 35 1 3.0702 -6.1939 -1.0234 36 1 0.1859 -6.4013 -0.7021 37 1 0.8047 -7.8339 -1.5619 38 1 0.3668 -6.1177 -3.2362 39 1 2.1374 -6.2299 -3.0483 40 1 -0.6992 -4.6363 -4.1181 41 1 -1.4432 -5.0637 -2.5587 42 1 -3.3186 -3.4233 -1.6048 43 1 -1.3937 -2.6553 -6.1263 44 1 2.8011 -3.1521 -1.9655 45 1 3.1996 -4.8006 -1.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088298576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:39 Heat of formation + Delta-G solvation = 40.562146 kcal Electronic energy + Delta-G solvation = -29999.864068 eV Core-core repulsion = 26055.688132 eV Total energy + Delta-G solvation = -3944.175936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.95569 -41.38429 -38.76347 -38.57792 -36.45628 -35.60896 -34.92623 -33.64186 -31.05200 -30.84461 -30.03676 -27.85762 -27.54009 -25.46038 -24.08267 -23.50285 -23.37426 -22.01062 -21.10497 -19.99039 -19.46255 -18.98668 -18.14253 -17.87958 -17.23274 -16.72287 -16.69470 -16.45317 -16.10496 -15.87972 -15.66421 -15.14486 -15.09293 -14.70419 -14.42864 -14.29470 -13.88781 -13.38620 -13.23020 -13.05662 -13.02358 -12.91993 -12.75761 -12.70024 -12.54972 -12.32402 -11.94296 -11.80020 -11.75676 -11.57897 -11.42172 -11.23912 -11.11809 -10.91751 -10.79549 -10.25703 -10.18089 -9.48021 -8.58586 -7.77590 -4.97715 0.65268 1.19132 1.36738 1.40603 1.46011 1.83634 1.90633 2.25021 2.60031 2.82088 3.53585 3.56517 3.65875 3.78355 3.89480 4.02427 4.08016 4.12702 4.29333 4.31134 4.32409 4.38102 4.54700 4.63076 4.70901 4.71687 4.79829 4.92034 4.98655 5.01592 5.04751 5.16097 5.22675 5.31617 5.47233 5.52174 5.55387 5.60956 5.68411 5.71865 5.91281 6.38275 6.51382 6.68393 7.48281 7.60489 7.66509 8.38102 8.55703 9.43897 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.007732 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.348567 B = 3620.585989 C = 6214.286798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.071 4.071 3 Si 0.948 3.052 4 H -0.292 1.292 5 H -0.305 1.305 6 H -0.276 1.276 7 C -0.217 4.217 8 H 0.060 0.940 9 N -0.707 5.707 10 C 0.154 3.846 11 H 0.037 0.963 12 C -0.120 4.120 13 C -0.109 4.109 14 C -0.126 4.126 15 C -0.143 4.143 16 C 0.098 3.902 17 N -0.598 5.598 18 C 0.452 3.548 19 O -0.502 6.502 20 C 0.093 3.907 21 N -0.462 5.462 22 C 0.189 3.811 23 N -0.328 5.328 24 N -0.340 5.340 25 C 0.361 3.639 26 O -0.442 6.442 27 C 0.108 3.892 28 H 0.234 0.766 29 H 0.372 0.628 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.257 0.743 43 H 0.426 0.574 44 H 0.016 0.984 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -26.319 -8.171 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.264 4.264 3 Si 0.780 3.220 4 H -0.219 1.219 5 H -0.232 1.232 6 H -0.202 1.202 7 C -0.350 4.350 8 H 0.078 0.922 9 N -0.347 5.347 10 C 0.044 3.956 11 H 0.055 0.945 12 C -0.158 4.158 13 C -0.147 4.147 14 C -0.162 4.162 15 C -0.180 4.180 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.236 3.764 19 O -0.374 6.374 20 C -0.032 4.032 21 N -0.165 5.165 22 C -0.099 4.099 23 N -0.168 5.168 24 N -0.190 5.190 25 C 0.055 3.945 26 O -0.245 6.245 27 C -0.018 4.018 28 H 0.043 0.957 29 H 0.206 0.794 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.172 0.828 41 H 0.185 0.815 42 H 0.273 0.727 43 H 0.286 0.714 44 H 0.034 0.966 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.456 -24.075 -7.928 25.350 hybrid contribution 1.137 0.703 0.005 1.336 sum 1.592 -23.372 -7.923 24.729 Atomic orbital electron populations 1.69839 1.06042 1.24028 1.59991 1.25241 0.95994 0.99862 1.05315 0.85577 0.77284 0.81444 0.77669 1.21892 1.23181 1.20187 1.19289 0.90328 0.85976 1.39381 0.92210 1.42454 1.05177 0.99856 1.87212 1.21103 0.94529 0.85998 0.93928 0.94498 1.22081 0.99179 0.94945 0.99602 1.21425 0.99206 0.95402 0.98668 1.21875 0.98278 1.00604 0.95493 1.22453 0.98215 1.01163 0.96212 1.22413 1.04777 0.77897 0.97178 1.47930 1.16723 1.11034 1.57697 1.21402 0.85755 0.87375 0.81840 1.91258 1.79297 1.17936 1.48868 1.22175 0.86991 0.88026 1.06016 1.46499 1.23351 1.25522 1.21080 1.26963 0.86450 0.97499 0.99010 1.74018 1.26185 1.11368 1.05186 1.74370 1.07526 1.23400 1.13695 1.22050 0.92506 0.90080 0.89869 1.84976 1.43574 1.72482 1.23447 1.22277 0.87741 0.97645 0.94150 0.95738 0.79383 0.95251 0.89966 0.91220 0.92870 0.90311 0.91537 0.91270 0.88084 0.87151 0.89092 0.82791 0.81518 0.72690 0.71354 0.96569 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.36 13.06 21.65 0.28 -64.08 16 2 C -0.07 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.95 51.89 29.55 68.60 2.03 53.92 16 4 H -0.29 -15.75 7.11 99.48 0.71 -15.04 16 5 H -0.30 -17.11 7.11 99.48 0.71 -16.41 16 6 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.22 -12.95 9.78 84.03 0.82 -12.13 16 8 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 9 N -0.71 -36.72 3.04 -321.59 -0.98 -37.70 16 10 C 0.15 5.82 2.68 45.28 0.12 5.94 16 11 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 12 C -0.12 -3.47 4.92 30.78 0.15 -3.32 16 13 C -0.11 -2.14 5.67 30.45 0.17 -1.97 16 14 C -0.13 -1.64 5.48 30.58 0.17 -1.47 16 15 C -0.14 -1.35 5.59 30.96 0.17 -1.18 16 16 C 0.10 1.02 5.83 86.46 0.50 1.53 16 17 N -0.60 -14.17 1.72 -819.31 -1.41 -15.59 16 18 C 0.45 13.83 6.92 87.66 0.61 14.43 16 19 O -0.50 -24.08 12.60 -3.03 -0.04 -24.12 16 20 C 0.09 1.69 5.04 85.63 0.43 2.13 16 21 N -0.46 -13.09 2.29 -647.65 -1.48 -14.57 16 22 C 0.19 5.84 12.80 179.80 2.30 8.14 16 23 N -0.33 -13.18 12.18 -59.40 -0.72 -13.91 16 24 N -0.34 -14.22 12.22 -173.67 -2.12 -16.34 16 25 C 0.36 12.50 9.22 179.70 1.66 14.16 16 26 O -0.44 -12.61 13.62 -88.45 -1.20 -13.82 16 27 C 0.11 3.36 4.92 86.60 0.43 3.79 16 28 H 0.23 16.01 8.31 -92.71 -0.77 15.24 16 29 H 0.37 21.40 6.34 -92.71 -0.59 20.81 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 2.16 3.68 -2.39 -0.01 2.15 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.14 7.85 -2.38 -0.02 1.12 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.96 4.49 -2.39 -0.01 0.95 16 36 H 0.07 0.88 5.45 -2.39 -0.01 0.87 16 37 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.11 0.39 5.98 -2.39 -0.01 0.38 16 39 H 0.09 0.74 7.97 -2.39 -0.02 0.72 16 40 H 0.15 1.48 7.59 -2.39 -0.02 1.47 16 41 H 0.17 1.42 8.01 -2.39 -0.02 1.40 16 42 H 0.26 5.38 8.06 -2.91 -0.02 5.36 16 43 H 0.43 5.59 9.06 -74.06 -0.67 4.92 16 44 H 0.02 0.66 8.05 -2.39 -0.02 0.64 16 45 H 0.11 2.51 5.07 -2.39 -0.01 2.49 16 Total: -1.00 -100.61 350.11 2.15 -98.46 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.20 Total: 21.75 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 8.00 Total: 25.98 kcal Atomic # 7 Polarization: -155.74 SS G_CDS: -6.43 Total: -162.18 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.24 Total: -37.93 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.03 Total: 53.92 kcal Total: -100.61 2.15 -98.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088298576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.027 kcal (2) G-P(sol) polarization free energy of solvation -100.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds