Wall clock time and date at job start Fri Apr 10 2020 18:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 N 1.46505 * 109.47019 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59380 * 124.99637 * 4 3 2 6 6 C 1.36595 * 106.83990 * 179.97438 * 5 4 3 7 7 C 1.47523 * 125.77209 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99655 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99841 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99681 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45733 * 324.99499 * 10 9 7 12 12 C 1.53031 * 109.46242 * 84.96864 * 10 9 7 13 13 C 1.53199 * 109.31295 * 181.39540 * 12 10 9 14 14 N 1.46916 * 108.76672 * 305.34628 * 13 12 10 15 15 C 1.36941 * 120.63487 * 233.59032 * 14 13 12 16 16 H 1.08000 * 119.99700 * 152.31181 * 15 14 13 17 17 C 1.38804 * 119.99672 * 332.31436 * 15 14 13 18 18 N 1.31623 * 120.00197 * 342.59472 * 17 15 14 19 19 Si 1.86800 * 120.00058 * 162.59354 * 17 15 14 20 20 H 1.48501 * 109.47144 * 94.34886 * 19 17 15 21 21 H 1.48502 * 109.47316 * 214.34925 * 19 17 15 22 22 H 1.48500 * 109.46862 * 334.34936 * 19 17 15 23 23 C 1.46935 * 118.74061 * 53.61643 * 14 13 12 24 24 C 1.53043 * 109.45837 * 205.02566 * 10 9 7 25 25 H 1.09001 * 109.49563 * 58.66345 * 24 10 9 26 26 O 1.42895 * 109.49946 * 298.56623 * 24 10 9 27 27 N 1.34408 * 108.45671 * 0.02562 * 6 5 4 28 28 N 1.28761 * 109.52188 * 359.73320 * 27 6 5 29 29 H 1.08999 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47467 * 300.00384 * 1 2 3 31 31 H 1.09002 * 109.46871 * 60.00348 * 1 2 3 32 32 H 1.09000 * 109.47467 * 239.99616 * 2 1 3 33 33 H 1.09002 * 109.46871 * 119.99651 * 2 1 3 34 34 H 1.08996 * 109.47073 * 299.99103 * 3 2 1 35 35 H 1.08996 * 109.47340 * 60.00044 * 3 2 1 36 36 H 1.07997 * 126.57974 * 359.97438 * 5 4 3 37 37 H 0.96997 * 120.00142 * 359.97438 * 9 7 6 38 38 H 1.08992 * 109.50434 * 301.33670 * 12 10 9 39 39 H 1.09006 * 109.49832 * 61.43742 * 12 10 9 40 40 H 1.09002 * 109.58360 * 185.56292 * 13 12 10 41 41 H 1.08998 * 109.71398 * 65.20699 * 13 12 10 42 42 H 0.96998 * 119.99904 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.59140 * 186.60357 * 23 14 13 44 44 H 1.08997 * 109.70041 * 66.24621 * 23 14 13 45 45 H 0.96698 * 114.00734 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3090 2.0632 -0.8858 6 6 5.5944 1.7990 -0.5067 7 6 6.8109 2.2775 -1.1905 8 8 6.7164 2.9715 -2.1845 9 7 8.0269 1.9455 -0.7135 10 6 9.2348 2.4212 -1.3922 11 1 9.0585 2.4532 -2.4674 12 6 9.5824 3.8246 -0.8907 13 6 10.8256 4.3326 -1.6277 14 7 11.9055 3.3497 -1.4661 15 6 13.1290 3.7304 -0.9829 16 1 13.7461 3.0188 -0.4545 17 6 13.5760 5.0308 -1.1724 18 7 13.0131 5.7938 -2.0854 19 14 14.9764 5.6981 -0.1317 20 1 16.2610 5.5138 -0.8536 21 1 14.7564 7.1440 0.1257 22 1 15.0250 4.9671 1.1599 23 6 11.6481 1.9505 -1.8332 24 6 10.3956 1.4693 -1.0941 25 1 10.1380 0.4650 -1.4304 26 8 10.6488 1.4517 0.3122 27 7 5.5635 1.0283 0.5940 28 7 4.3404 0.8014 0.9263 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9967 2.6556 -1.7331 37 1 8.1022 1.3922 0.0796 38 1 8.7462 4.4969 -1.0821 39 1 9.7834 3.7888 0.1801 40 1 11.1354 5.2887 -1.2056 41 1 10.6000 4.4569 -2.6868 42 1 13.3252 6.7026 -2.2175 43 1 12.5006 1.3347 -1.5467 44 1 11.4888 1.8762 -2.9089 45 1 11.3740 0.8682 0.5740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090684325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:48 Heat of formation + Delta-G solvation = 29.445344 kcal Electronic energy + Delta-G solvation = -27391.322245 eV Core-core repulsion = 23446.664248 eV Total energy + Delta-G solvation = -3944.657997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.35251 -39.52164 -37.84751 -36.37460 -34.85810 -34.25811 -32.98698 -31.84219 -31.01404 -29.80046 -28.70078 -27.42993 -25.24776 -23.64252 -23.08111 -22.23691 -21.86888 -21.57520 -20.07061 -19.43725 -18.12169 -17.10547 -16.53178 -16.29909 -16.07419 -15.68499 -15.53226 -14.88716 -14.62832 -14.50843 -14.26351 -14.03813 -13.87153 -13.63620 -13.20707 -13.14361 -12.72546 -12.64142 -12.38558 -12.05567 -12.02665 -11.96002 -11.57475 -11.29870 -11.16503 -10.98488 -10.79382 -10.66282 -10.56772 -10.25826 -10.19154 -9.98941 -9.94373 -9.57864 -9.42458 -9.26583 -8.61801 -8.35234 -6.62730 -5.74471 -3.16095 0.96649 1.67583 1.77463 3.33051 3.41051 3.43094 3.48286 3.51115 3.88898 4.09672 4.17764 4.46214 4.51941 4.62771 4.65892 4.77184 4.79182 4.89447 4.99396 5.15484 5.31463 5.39156 5.43140 5.43717 5.46212 5.60585 5.66523 5.69417 5.82467 6.02205 6.12653 6.30424 6.44859 6.54528 6.63390 6.70109 6.87500 6.98899 7.45930 7.65560 7.73411 7.83207 7.92766 8.18220 8.41635 8.49038 9.24214 9.87274 10.43482 11.33994 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032740 B = 0.002340 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.004935 B =11965.226385 C =12180.550164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.364 5.364 5 C 0.090 3.910 6 C -0.095 4.095 7 C 0.598 3.402 8 O -0.542 6.542 9 N -0.701 5.701 10 C 0.162 3.838 11 H 0.092 0.908 12 C -0.144 4.144 13 C 0.174 3.826 14 N -0.582 5.582 15 C -0.247 4.247 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.119 3.881 24 C 0.081 3.919 25 H 0.046 0.954 26 O -0.553 6.553 27 N -0.203 5.203 28 N -0.067 5.067 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.204 0.796 37 H 0.409 0.591 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.020 0.980 42 H 0.253 0.747 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.605 -11.282 2.729 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.149 5.149 5 C -0.067 4.067 6 C -0.235 4.235 7 C 0.381 3.619 8 O -0.419 6.419 9 N -0.350 5.350 10 C 0.059 3.941 11 H 0.110 0.890 12 C -0.184 4.184 13 C 0.048 3.952 14 N -0.304 5.304 15 C -0.377 4.377 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.009 4.009 24 C 0.020 3.980 25 H 0.064 0.936 26 O -0.358 6.358 27 N -0.077 5.077 28 N -0.047 5.047 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.221 0.779 37 H 0.244 0.756 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -24.074 -11.048 3.222 26.683 hybrid contribution 0.945 0.407 -0.043 1.030 sum -23.129 -10.640 3.179 25.657 Atomic orbital electron populations 1.21705 0.93846 1.02876 1.02363 1.21833 0.96948 0.94602 1.04257 1.22149 0.72626 1.00054 1.05165 1.50555 1.08761 1.35534 1.20021 1.23398 0.90191 0.97043 0.96041 1.21632 0.94796 1.07970 0.99085 1.16793 0.81903 0.79930 0.83238 1.90813 1.86634 1.38689 1.25777 1.46010 1.04900 1.52652 1.31478 1.21082 0.81062 0.94888 0.97114 0.88973 1.22500 0.99891 0.93949 1.02060 1.20783 0.84071 0.94270 0.96124 1.43910 1.09968 1.01961 1.74553 1.19112 0.94360 0.96152 1.28062 0.91818 1.25025 0.98420 0.98671 0.97652 1.70040 1.43933 1.08713 1.31953 0.86291 0.81897 0.78258 0.80364 1.21580 1.21615 1.20444 1.21538 0.94368 0.88865 0.96116 1.22623 0.96231 0.96237 0.82906 0.93605 1.86463 1.56674 1.70418 1.22249 1.74665 1.12761 1.10085 1.10180 1.81951 0.93436 1.17638 1.11709 0.91635 0.92071 0.92200 0.91014 0.90013 0.87692 0.88356 0.77891 0.75553 0.92970 0.91442 0.89153 0.96188 0.93649 0.92031 0.95504 0.78129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.91 37.15 0.37 -0.06 16 2 C -0.14 -0.63 6.14 -26.73 -0.16 -0.80 16 3 C 0.12 0.57 6.54 -4.04 -0.03 0.55 16 4 N -0.36 -3.36 3.69 -61.06 -0.23 -3.58 16 5 C 0.09 0.93 11.27 -16.83 -0.19 0.74 16 6 C -0.10 -1.32 6.99 -83.55 -0.58 -1.91 16 7 C 0.60 9.83 7.78 -12.48 -0.10 9.74 16 8 O -0.54 -10.20 16.53 5.28 0.09 -10.11 16 9 N -0.70 -11.57 5.05 -54.81 -0.28 -11.84 16 10 C 0.16 2.99 2.20 -67.89 -0.15 2.84 16 11 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 12 C -0.14 -3.05 5.51 -26.61 -0.15 -3.19 16 13 C 0.17 4.30 5.31 -3.71 -0.02 4.28 16 14 N -0.58 -14.50 2.94 -172.32 -0.51 -15.00 16 15 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 16 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 18 N -0.90 -26.48 11.19 55.49 0.62 -25.86 16 19 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.12 2.41 6.16 -3.70 -0.02 2.38 16 24 C 0.08 1.40 3.38 -26.61 -0.09 1.31 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 O -0.55 -9.50 12.08 -35.23 -0.43 -9.93 16 27 N -0.20 -2.91 12.04 32.85 0.40 -2.52 16 28 N -0.07 -0.85 13.65 60.35 0.82 -0.02 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.23 8.08 -51.93 -0.42 -0.19 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.20 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.41 6.43 7.94 -40.82 -0.32 6.11 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.51 7.61 -51.93 -0.40 1.12 16 40 H 0.09 2.51 6.04 -51.93 -0.31 2.19 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.37 5.08 9.08 45.56 0.41 5.49 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -34.33 373.70 -6.30 -40.63 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.04 Total: 6.79 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.35 Total: 8.92 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.83 Total: -58.83 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.34 Total: -20.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.33 -6.30 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090684325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.071 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds