Wall clock time and date at job start Fri Apr 10 2020 18:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 N 1.46505 * 109.47019 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59380 * 124.99637 * 4 3 2 6 6 C 1.36595 * 106.83990 * 179.97438 * 5 4 3 7 7 C 1.47523 * 125.77209 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99655 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99841 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99681 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45733 * 324.99499 * 10 9 7 12 12 C 1.53031 * 109.46242 * 84.96864 * 10 9 7 13 13 C 1.53199 * 109.31295 * 181.39540 * 12 10 9 14 14 N 1.46916 * 108.76672 * 305.34628 * 13 12 10 15 15 C 1.36941 * 120.63487 * 233.59032 * 14 13 12 16 16 H 1.08000 * 119.99700 * 152.31181 * 15 14 13 17 17 C 1.38804 * 119.99672 * 332.31436 * 15 14 13 18 18 N 1.31623 * 120.00197 * 342.59472 * 17 15 14 19 19 Si 1.86800 * 120.00058 * 162.59354 * 17 15 14 20 20 H 1.48501 * 109.47144 * 94.34886 * 19 17 15 21 21 H 1.48502 * 109.47316 * 214.34925 * 19 17 15 22 22 H 1.48500 * 109.46862 * 334.34936 * 19 17 15 23 23 C 1.46935 * 118.74061 * 53.61643 * 14 13 12 24 24 C 1.53043 * 109.45837 * 205.02566 * 10 9 7 25 25 H 1.09001 * 109.49563 * 58.66345 * 24 10 9 26 26 O 1.42895 * 109.49946 * 298.56623 * 24 10 9 27 27 N 1.34408 * 108.45671 * 0.02562 * 6 5 4 28 28 N 1.28761 * 109.52188 * 359.73320 * 27 6 5 29 29 H 1.08999 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47467 * 300.00384 * 1 2 3 31 31 H 1.09002 * 109.46871 * 60.00348 * 1 2 3 32 32 H 1.09000 * 109.47467 * 239.99616 * 2 1 3 33 33 H 1.09002 * 109.46871 * 119.99651 * 2 1 3 34 34 H 1.08996 * 109.47073 * 299.99103 * 3 2 1 35 35 H 1.08996 * 109.47340 * 60.00044 * 3 2 1 36 36 H 1.07997 * 126.57974 * 359.97438 * 5 4 3 37 37 H 0.96997 * 120.00142 * 359.97438 * 9 7 6 38 38 H 1.08992 * 109.50434 * 301.33670 * 12 10 9 39 39 H 1.09006 * 109.49832 * 61.43742 * 12 10 9 40 40 H 1.09002 * 109.58360 * 185.56292 * 13 12 10 41 41 H 1.08998 * 109.71398 * 65.20699 * 13 12 10 42 42 H 0.96998 * 119.99904 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.59140 * 186.60357 * 23 14 13 44 44 H 1.08997 * 109.70041 * 66.24621 * 23 14 13 45 45 H 0.96698 * 114.00734 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3090 2.0632 -0.8858 6 6 5.5944 1.7990 -0.5067 7 6 6.8109 2.2775 -1.1905 8 8 6.7164 2.9715 -2.1845 9 7 8.0269 1.9455 -0.7135 10 6 9.2348 2.4212 -1.3922 11 1 9.0585 2.4532 -2.4674 12 6 9.5824 3.8246 -0.8907 13 6 10.8256 4.3326 -1.6277 14 7 11.9055 3.3497 -1.4661 15 6 13.1290 3.7304 -0.9829 16 1 13.7461 3.0188 -0.4545 17 6 13.5760 5.0308 -1.1724 18 7 13.0131 5.7938 -2.0854 19 14 14.9764 5.6981 -0.1317 20 1 16.2610 5.5138 -0.8536 21 1 14.7564 7.1440 0.1257 22 1 15.0250 4.9671 1.1599 23 6 11.6481 1.9505 -1.8332 24 6 10.3956 1.4693 -1.0941 25 1 10.1380 0.4650 -1.4304 26 8 10.6488 1.4517 0.3122 27 7 5.5635 1.0283 0.5940 28 7 4.3404 0.8014 0.9263 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9967 2.6556 -1.7331 37 1 8.1022 1.3922 0.0796 38 1 8.7462 4.4969 -1.0821 39 1 9.7834 3.7888 0.1801 40 1 11.1354 5.2887 -1.2056 41 1 10.6000 4.4569 -2.6868 42 1 13.3252 6.7026 -2.2175 43 1 12.5006 1.3347 -1.5467 44 1 11.4888 1.8762 -2.9089 45 1 11.3740 0.8682 0.5740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090684325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:48 Heat of formation + Delta-G solvation = 2.231895 kcal Electronic energy + Delta-G solvation = -27392.502308 eV Core-core repulsion = 23446.664248 eV Total energy + Delta-G solvation = -3945.838060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.24759 -40.91711 -39.34274 -36.92422 -36.57045 -35.69034 -33.78669 -33.49447 -32.22391 -31.38535 -30.31010 -28.02977 -26.99872 -24.91956 -23.93905 -23.77619 -23.15968 -22.46240 -21.27643 -20.95139 -19.26046 -18.81420 -17.56872 -17.37151 -17.21299 -17.17030 -16.55425 -16.14542 -15.89972 -15.71478 -15.57558 -15.39167 -15.33318 -14.89884 -14.52467 -14.37772 -13.76332 -13.64564 -13.62149 -13.21113 -12.99254 -12.96489 -12.75615 -12.65229 -12.50657 -12.42094 -12.23972 -12.08304 -12.05659 -11.87358 -11.74548 -11.47014 -11.27842 -11.14026 -10.85272 -10.48879 -10.40270 -9.96814 -8.65041 -7.84475 -5.28494 0.14051 0.60287 1.09668 1.47336 1.50088 1.59566 2.09789 2.23738 2.53054 3.16549 3.30054 3.35295 3.42518 3.67012 3.80764 3.83239 3.87558 3.95827 4.07731 4.15930 4.22908 4.28712 4.38894 4.46893 4.52828 4.69917 4.72673 4.78589 4.83842 4.89830 4.98451 5.02461 5.11852 5.14246 5.17861 5.32864 5.46048 5.49771 5.50372 5.66216 5.72166 6.40184 6.45710 6.90096 7.00617 7.14801 7.16919 7.86447 8.38738 9.22428 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032740 B = 0.002340 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.004935 B =11965.226385 C =12180.550164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.111 3.889 6 C -0.124 4.124 7 C 0.600 3.400 8 O -0.570 6.570 9 N -0.696 5.696 10 C 0.168 3.832 11 H 0.083 0.917 12 C -0.126 4.126 13 C 0.183 3.817 14 N -0.598 5.598 15 C -0.251 4.251 16 H 0.072 0.928 17 C -0.057 4.057 18 N -0.937 5.937 19 Si 0.966 3.034 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.269 1.269 23 C 0.113 3.887 24 C 0.097 3.903 25 H 0.084 0.916 26 O -0.565 6.565 27 N -0.225 5.225 28 N -0.085 5.085 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.237 0.763 37 H 0.415 0.585 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.054 0.946 41 H -0.002 1.002 42 H 0.248 0.752 43 H 0.076 0.924 44 H 0.027 0.973 45 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.397 -12.679 3.311 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.133 5.133 5 C -0.048 4.048 6 C -0.264 4.264 7 C 0.385 3.615 8 O -0.449 6.449 9 N -0.346 5.346 10 C 0.064 3.936 11 H 0.101 0.899 12 C -0.166 4.166 13 C 0.057 3.943 14 N -0.321 5.321 15 C -0.381 4.381 16 H 0.090 0.910 17 C -0.252 4.252 18 N -0.584 5.584 19 Si 0.795 3.205 20 H -0.212 1.212 21 H -0.224 1.224 22 H -0.194 1.194 23 C -0.014 4.014 24 C 0.036 3.964 25 H 0.101 0.899 26 O -0.372 6.372 27 N -0.099 5.099 28 N -0.066 5.066 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.253 0.747 37 H 0.251 0.749 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.016 0.984 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -25.895 -12.517 3.847 29.018 hybrid contribution 1.363 0.785 -0.237 1.591 sum -24.532 -11.732 3.610 27.431 Atomic orbital electron populations 1.21679 0.92251 1.03098 1.03305 1.21782 0.98190 0.94259 1.03009 1.22677 0.69847 1.00664 1.07692 1.50867 1.10118 1.33741 1.18525 1.23849 0.89026 0.95772 0.96106 1.21406 0.94952 1.09967 1.00066 1.17088 0.82458 0.79122 0.82811 1.90793 1.87107 1.39975 1.27068 1.45833 1.04447 1.52703 1.31581 1.20822 0.82656 0.93542 0.96619 0.89883 1.22212 0.97874 0.95914 1.00620 1.20480 0.85655 0.93361 0.94839 1.44104 1.09317 1.03757 1.74908 1.19494 0.94927 0.96367 1.27326 0.91031 1.25802 1.01188 0.99239 0.98943 1.70197 1.45776 1.08669 1.33763 0.85276 0.79133 0.77016 0.79089 1.21178 1.22383 1.19417 1.21784 0.96558 0.86449 0.96572 1.22400 0.93902 0.97337 0.82775 0.89877 1.86432 1.57655 1.71275 1.21843 1.74634 1.13828 1.10760 1.10672 1.81869 0.93378 1.18502 1.12833 0.91844 0.91450 0.90914 0.91759 0.91839 0.84160 0.86860 0.74668 0.74893 0.93445 0.92622 0.92728 0.98428 0.94272 0.90568 0.95491 0.76115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.91 71.98 0.71 0.26 16 2 C -0.13 -0.95 6.14 30.59 0.19 -0.76 16 3 C 0.11 0.69 6.54 86.38 0.56 1.25 16 4 N -0.35 -5.59 3.69 -347.10 -1.28 -6.87 16 5 C 0.11 2.01 11.27 83.85 0.95 2.95 16 6 C -0.12 -3.29 6.99 40.82 0.29 -3.01 16 7 C 0.60 19.32 7.78 86.69 0.67 19.99 16 8 O -0.57 -21.21 16.53 -4.01 -0.07 -21.28 16 9 N -0.70 -22.41 5.05 -445.58 -2.25 -24.66 16 10 C 0.17 6.12 2.20 45.02 0.10 6.21 16 11 H 0.08 3.21 7.58 -2.39 -0.02 3.19 16 12 C -0.13 -5.43 5.51 30.67 0.17 -5.27 16 13 C 0.18 9.41 5.31 86.37 0.46 9.87 16 14 N -0.60 -30.03 2.94 -699.09 -2.05 -32.08 16 15 C -0.25 -13.73 9.58 84.03 0.81 -12.93 16 16 H 0.07 3.74 7.89 -2.91 -0.02 3.71 16 17 C -0.06 -3.23 4.91 84.86 0.42 -2.81 16 18 N -0.94 -56.84 11.19 21.65 0.24 -56.60 16 19 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.11 4.43 6.16 86.36 0.53 4.96 16 24 C 0.10 3.16 3.38 30.67 0.10 3.27 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 O -0.56 -18.24 12.08 -148.98 -1.80 -20.04 16 27 N -0.23 -6.27 12.04 -49.99 -0.60 -6.87 16 28 N -0.09 -2.05 13.65 37.02 0.51 -1.54 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.14 -0.04 8.08 -2.39 -0.02 -0.06 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.24 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.41 12.57 7.94 -92.71 -0.74 11.84 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 2.52 7.61 -2.38 -0.02 2.50 16 40 H 0.05 3.18 6.04 -2.39 -0.01 3.16 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.08 2.75 7.93 -2.39 -0.02 2.73 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.39 9.57 9.08 -74.06 -0.67 8.90 16 Total: -1.00 -76.48 373.70 0.29 -76.19 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.39 Total: 22.04 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 5.96 Total: 23.99 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -5.44 Total: -128.63 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.87 Total: -41.32 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.48 0.29 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090684325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.422 kcal (2) G-P(sol) polarization free energy of solvation -76.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds