Wall clock time and date at job start Fri Apr 10 2020 18:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33315 * 126.81705 * 2 1 4 4 N 1.28513 * 109.43958 * 179.82197 * 3 2 1 5 5 N 1.28712 * 110.63795 * 0.44822 * 4 3 2 6 6 H 0.97004 * 126.03674 * 179.71724 * 5 4 3 7 7 C 1.37010 * 126.81101 * 180.30544 * 2 1 3 8 8 C 1.47234 * 127.18845 * 359.97438 * 7 2 1 9 9 O 1.21616 * 120.00305 * 106.04008 * 8 7 2 10 10 N 1.34782 * 119.99671 * 286.03742 * 8 7 2 11 11 C 1.46918 * 120.63158 * 4.70987 * 10 8 7 12 12 C 1.52764 * 109.00744 * 233.58295 * 11 10 8 13 13 C 1.53046 * 109.38345 * 305.58664 * 12 11 10 14 14 N 1.46498 * 109.45151 * 181.24979 * 13 12 11 15 15 C 1.36935 * 120.00251 * 299.94136 * 14 13 12 16 16 H 1.07998 * 120.00085 * 322.04342 * 15 14 13 17 17 C 1.38812 * 120.00130 * 142.03637 * 15 14 13 18 18 N 1.31620 * 120.00018 * 160.18689 * 17 15 14 19 19 Si 1.86804 * 119.99942 * 340.19532 * 17 15 14 20 20 H 1.48500 * 109.47187 * 93.41795 * 19 17 15 21 21 H 1.48505 * 109.46788 * 213.42023 * 19 17 15 22 22 H 1.48497 * 109.47165 * 333.41733 * 19 17 15 23 23 C 1.46500 * 119.99741 * 119.93854 * 14 13 12 24 24 C 1.52990 * 109.47214 * 83.50245 * 23 14 13 25 25 O 1.42902 * 109.47210 * 63.78691 * 24 23 14 26 26 C 1.53041 * 109.53621 * 61.23913 * 13 12 11 27 27 C 1.46925 * 120.62510 * 184.98401 * 10 8 7 28 28 H 1.08994 * 109.47475 * 269.69289 * 1 2 3 29 29 H 1.09003 * 109.46829 * 29.69142 * 1 2 3 30 30 H 1.08998 * 109.47099 * 149.68419 * 1 2 3 31 31 H 1.08999 * 109.58874 * 353.41403 * 11 10 8 32 32 H 1.08997 * 109.59396 * 113.84392 * 11 10 8 33 33 H 1.09002 * 109.56760 * 185.55288 * 12 11 10 34 34 H 1.09000 * 109.36142 * 65.49769 * 12 11 10 35 35 H 1.09000 * 109.45659 * 301.22176 * 13 12 11 36 36 H 0.97008 * 119.99876 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.46971 * 203.50763 * 23 14 13 38 38 H 1.08998 * 109.47012 * 323.50106 * 23 14 13 39 39 H 1.08999 * 109.47436 * 183.78702 * 24 23 14 40 40 H 1.09005 * 109.47293 * 303.78871 * 24 23 14 41 41 H 0.96703 * 114.00028 * 180.02562 * 25 24 23 42 42 H 1.08992 * 109.50003 * 178.68653 * 26 13 12 43 43 H 1.09001 * 109.52441 * 58.60432 * 26 13 12 44 44 H 1.09000 * 109.58593 * 246.15272 * 27 10 8 45 45 H 1.08996 * 109.59260 * 6.44476 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6834 0.0038 5 7 3.6056 -0.6016 -0.0031 6 1 4.4213 -1.1267 -0.0060 7 6 2.3280 -1.0969 -0.0058 8 6 1.9221 -2.5122 -0.0129 9 8 2.0339 -3.1718 -1.0284 10 7 1.4268 -3.0767 1.1063 11 6 1.1895 -2.2688 2.3103 12 6 1.9053 -2.9175 3.4937 13 6 1.4614 -4.3768 3.6181 14 7 2.1244 -4.9919 4.7706 15 6 3.4913 -5.0574 4.8198 16 1 4.0550 -5.2568 3.9205 17 6 4.1523 -4.8671 6.0255 18 7 5.3862 -5.3002 6.1749 19 14 3.2906 -3.9968 7.4359 20 1 2.6443 -5.0023 8.3171 21 1 4.2844 -3.2186 8.2184 22 1 2.2582 -3.0775 6.8935 23 6 1.3249 -5.5370 5.8706 24 6 0.8725 -6.9553 5.5183 25 8 2.0163 -7.8030 5.3938 26 6 1.8413 -5.1375 2.3456 27 6 1.1195 -4.5129 1.1473 28 1 -0.3634 -0.0055 1.0276 29 1 -0.3633 0.8928 -0.5091 30 1 -0.3633 -0.8871 -0.5187 31 1 1.5781 -1.2620 2.1572 32 1 0.1198 -2.2227 2.5146 33 1 1.6554 -2.3819 4.4097 34 1 2.9823 -2.8774 3.3307 35 1 0.3810 -4.4172 3.7563 36 1 5.8481 -5.1675 7.0176 37 1 1.9266 -5.5626 6.7791 38 1 0.4506 -4.9062 6.0316 39 1 0.2225 -7.3357 6.3062 40 1 0.3279 -6.9391 4.5742 41 1 1.8041 -8.7196 5.1705 42 1 1.5459 -6.1820 2.4442 43 1 2.9189 -5.0771 2.1931 44 1 0.0440 -4.6535 1.2548 45 1 1.4597 -4.9859 0.2261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098446166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:22 Heat of formation + Delta-G solvation = 43.487339 kcal Electronic energy + Delta-G solvation = -28942.253881 eV Core-core repulsion = 24998.204791 eV Total energy + Delta-G solvation = -3944.049090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.50051 -40.08845 -37.91440 -36.44086 -34.89982 -34.14706 -32.90857 -31.96696 -30.96763 -30.85841 -28.32144 -27.87753 -25.52126 -24.21292 -23.16363 -22.93789 -22.26388 -21.22573 -20.30588 -19.42539 -18.20500 -17.40433 -16.81927 -16.51955 -16.41279 -15.86363 -15.39092 -15.08873 -14.85826 -14.20141 -14.02156 -13.80997 -13.54964 -13.39060 -13.38389 -13.05546 -12.87793 -12.80026 -12.54065 -12.16589 -12.13821 -11.95709 -11.79579 -11.31240 -11.20108 -10.97231 -10.84931 -10.70551 -10.62407 -10.45958 -10.24548 -10.04039 -9.74762 -9.58788 -9.34142 -9.22146 -8.76022 -8.48299 -6.86720 -5.94277 -3.38152 1.05523 1.87206 2.17928 2.60431 2.99581 3.27988 3.41786 3.45162 4.06321 4.23962 4.51115 4.55740 4.67720 4.92957 4.99340 5.01031 5.19762 5.28586 5.34443 5.35850 5.40406 5.46360 5.54087 5.59008 5.69583 5.76183 5.79073 5.86827 5.92809 5.97858 6.02309 6.05630 6.24100 6.27403 6.39416 6.50492 6.58725 6.64503 6.85765 6.88109 7.17229 7.82250 8.05051 8.15459 8.33868 8.42189 8.96130 9.73480 10.09287 11.21647 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.004073 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.598186 B = 6872.421248 C = 7578.293644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.021 3.979 3 N -0.264 5.264 4 N -0.056 5.056 5 N -0.363 5.363 6 H 0.455 0.545 7 C -0.045 4.045 8 C 0.592 3.408 9 O -0.527 6.527 10 N -0.584 5.584 11 C 0.105 3.895 12 C -0.142 4.142 13 C 0.181 3.819 14 N -0.592 5.592 15 C -0.247 4.247 16 H 0.075 0.925 17 C 0.038 3.962 18 N -0.902 5.902 19 Si 0.877 3.123 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.129 3.871 24 C 0.061 3.939 25 O -0.538 6.538 26 C -0.139 4.139 27 C 0.114 3.886 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.023 0.977 40 H 0.031 0.969 41 H 0.354 0.646 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 4.377 -8.576 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 N -0.131 5.131 4 N -0.037 5.037 5 N -0.087 5.087 6 H 0.303 0.697 7 C -0.181 4.181 8 C 0.375 3.625 9 O -0.402 6.402 10 N -0.316 5.316 11 C -0.018 4.018 12 C -0.182 4.182 13 C 0.073 3.927 14 N -0.313 5.313 15 C -0.375 4.375 16 H 0.093 0.907 17 C -0.161 4.161 18 N -0.543 5.543 19 Si 0.708 3.292 20 H -0.216 1.216 21 H -0.233 1.233 22 H -0.196 1.196 23 C 0.003 3.997 24 C -0.019 4.019 25 O -0.339 6.339 26 C -0.179 4.179 27 C -0.008 4.008 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.198 0.802 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.472 5.963 -8.833 15.659 hybrid contribution -0.571 -1.402 0.938 1.781 sum -12.044 4.560 -7.896 15.106 Atomic orbital electron populations 1.20201 0.85376 1.03965 1.03631 1.22199 0.98250 0.87187 1.04268 1.74824 0.95288 1.25982 1.17017 1.78200 1.15696 0.91982 1.17775 1.45363 1.08579 1.06655 1.48104 0.69736 1.21842 0.85924 0.96601 1.13752 1.16819 0.78434 0.83448 0.83805 1.90849 1.55224 1.62438 1.31706 1.48058 1.61927 1.10212 1.11393 1.21899 1.00823 0.94461 0.84601 1.22302 1.01983 0.98033 0.95882 1.20291 0.94562 0.90030 0.87773 1.44048 1.03279 1.65246 1.18719 1.18491 0.79657 1.43183 0.96188 0.90723 1.25389 0.94937 0.98145 0.97672 1.69845 1.12673 1.46378 1.25449 0.86978 0.78840 0.80274 0.83094 1.21644 1.23258 1.19598 1.21388 0.94835 0.90257 0.93207 1.22888 0.87707 0.93951 0.97379 1.86912 1.31815 1.21728 1.93441 1.22358 1.01806 0.99784 0.93926 1.21839 0.99833 0.78238 1.00859 0.89826 0.89753 0.90495 0.90549 0.90886 0.90925 0.90451 0.92936 0.92952 0.91462 0.93300 0.95865 0.95048 0.80230 0.90799 0.90772 0.91313 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.28 36.01 0.37 -0.26 16 2 C 0.02 0.25 6.41 -82.39 -0.53 -0.28 16 3 N -0.26 -3.69 12.35 33.51 0.41 -3.28 16 4 N -0.06 -0.77 13.35 60.35 0.81 0.03 16 5 N -0.36 -4.38 7.07 33.31 0.24 -4.14 16 6 H 0.46 4.30 8.96 -190.33 -1.71 2.59 16 7 C -0.04 -0.57 5.43 -82.33 -0.45 -1.02 16 8 C 0.59 8.14 7.32 -12.60 -0.09 8.04 16 9 O -0.53 -8.71 16.54 5.26 0.09 -8.62 16 10 N -0.58 -7.40 2.98 -174.37 -0.52 -7.92 16 11 C 0.11 1.25 6.28 -3.94 -0.02 1.23 16 12 C -0.14 -2.22 5.29 -26.83 -0.14 -2.37 16 13 C 0.18 2.98 2.59 -67.89 -0.18 2.81 16 14 N -0.59 -12.44 1.96 -165.62 -0.33 -12.76 16 15 C -0.25 -6.37 8.50 -15.06 -0.13 -6.50 16 16 H 0.08 2.14 7.04 -52.49 -0.37 1.77 16 17 C 0.04 1.07 5.31 -17.43 -0.09 0.98 16 18 N -0.90 -27.17 13.97 55.49 0.78 -26.39 16 19 Si 0.88 21.51 24.95 -169.99 -4.24 17.27 16 20 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16 21 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 23 C 0.13 2.56 4.57 -4.05 -0.02 2.54 16 24 C 0.06 1.05 7.39 37.15 0.27 1.32 16 25 O -0.54 -10.55 13.39 -35.23 -0.47 -11.02 16 26 C -0.14 -2.15 5.30 -26.61 -0.14 -2.29 16 27 C 0.11 1.44 6.42 -3.71 -0.02 1.42 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.63 8.02 -51.93 -0.42 0.21 16 31 H 0.08 0.90 5.70 -51.93 -0.30 0.60 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 35 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 1.55 3.42 -51.93 -0.18 1.37 16 38 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.35 4.96 9.12 45.56 0.42 5.38 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.37 7.06 -51.93 -0.37 1.01 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.19 7.03 -51.93 -0.37 0.82 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -34.36 361.94 -6.01 -40.38 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.05 Total: 5.38 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.17 Total: 5.63 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 1.39 Total: -54.46 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.38 Total: -19.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.24 Total: 17.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.36 -6.01 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098446166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.863 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds