Wall clock time and date at job start Fri Apr 10 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33315 * 126.81705 * 2 1 4 4 N 1.28513 * 109.43958 * 179.82197 * 3 2 1 5 5 N 1.28712 * 110.63795 * 0.44822 * 4 3 2 6 6 H 0.97004 * 126.03674 * 179.71724 * 5 4 3 7 7 C 1.37010 * 126.81101 * 180.30544 * 2 1 3 8 8 C 1.47234 * 127.18845 * 359.97438 * 7 2 1 9 9 O 1.21616 * 120.00305 * 106.04008 * 8 7 2 10 10 N 1.34782 * 119.99671 * 286.03742 * 8 7 2 11 11 C 1.46918 * 120.63158 * 4.70987 * 10 8 7 12 12 C 1.52764 * 109.00744 * 233.58295 * 11 10 8 13 13 C 1.53046 * 109.38345 * 305.58664 * 12 11 10 14 14 N 1.46498 * 109.45151 * 181.24979 * 13 12 11 15 15 C 1.36935 * 120.00251 * 299.94136 * 14 13 12 16 16 H 1.07998 * 120.00085 * 322.04342 * 15 14 13 17 17 C 1.38812 * 120.00130 * 142.03637 * 15 14 13 18 18 N 1.31620 * 120.00018 * 160.18689 * 17 15 14 19 19 Si 1.86804 * 119.99942 * 340.19532 * 17 15 14 20 20 H 1.48500 * 109.47187 * 93.41795 * 19 17 15 21 21 H 1.48505 * 109.46788 * 213.42023 * 19 17 15 22 22 H 1.48497 * 109.47165 * 333.41733 * 19 17 15 23 23 C 1.46500 * 119.99741 * 119.93854 * 14 13 12 24 24 C 1.52990 * 109.47214 * 83.50245 * 23 14 13 25 25 O 1.42902 * 109.47210 * 63.78691 * 24 23 14 26 26 C 1.53041 * 109.53621 * 61.23913 * 13 12 11 27 27 C 1.46925 * 120.62510 * 184.98401 * 10 8 7 28 28 H 1.08994 * 109.47475 * 269.69289 * 1 2 3 29 29 H 1.09003 * 109.46829 * 29.69142 * 1 2 3 30 30 H 1.08998 * 109.47099 * 149.68419 * 1 2 3 31 31 H 1.08999 * 109.58874 * 353.41403 * 11 10 8 32 32 H 1.08997 * 109.59396 * 113.84392 * 11 10 8 33 33 H 1.09002 * 109.56760 * 185.55288 * 12 11 10 34 34 H 1.09000 * 109.36142 * 65.49769 * 12 11 10 35 35 H 1.09000 * 109.45659 * 301.22176 * 13 12 11 36 36 H 0.97008 * 119.99876 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.46971 * 203.50763 * 23 14 13 38 38 H 1.08998 * 109.47012 * 323.50106 * 23 14 13 39 39 H 1.08999 * 109.47436 * 183.78702 * 24 23 14 40 40 H 1.09005 * 109.47293 * 303.78871 * 24 23 14 41 41 H 0.96703 * 114.00028 * 180.02562 * 25 24 23 42 42 H 1.08992 * 109.50003 * 178.68653 * 26 13 12 43 43 H 1.09001 * 109.52441 * 58.60432 * 26 13 12 44 44 H 1.09000 * 109.58593 * 246.15272 * 27 10 8 45 45 H 1.08996 * 109.59260 * 6.44476 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6834 0.0038 5 7 3.6056 -0.6016 -0.0031 6 1 4.4213 -1.1267 -0.0060 7 6 2.3280 -1.0969 -0.0058 8 6 1.9221 -2.5122 -0.0129 9 8 2.0339 -3.1718 -1.0284 10 7 1.4268 -3.0767 1.1063 11 6 1.1895 -2.2688 2.3103 12 6 1.9053 -2.9175 3.4937 13 6 1.4614 -4.3768 3.6181 14 7 2.1244 -4.9919 4.7706 15 6 3.4913 -5.0574 4.8198 16 1 4.0550 -5.2568 3.9205 17 6 4.1523 -4.8671 6.0255 18 7 5.3862 -5.3002 6.1749 19 14 3.2906 -3.9968 7.4359 20 1 2.6443 -5.0023 8.3171 21 1 4.2844 -3.2186 8.2184 22 1 2.2582 -3.0775 6.8935 23 6 1.3249 -5.5370 5.8706 24 6 0.8725 -6.9553 5.5183 25 8 2.0163 -7.8030 5.3938 26 6 1.8413 -5.1375 2.3456 27 6 1.1195 -4.5129 1.1473 28 1 -0.3634 -0.0055 1.0276 29 1 -0.3633 0.8928 -0.5091 30 1 -0.3633 -0.8871 -0.5187 31 1 1.5781 -1.2620 2.1572 32 1 0.1198 -2.2227 2.5146 33 1 1.6554 -2.3819 4.4097 34 1 2.9823 -2.8774 3.3307 35 1 0.3810 -4.4172 3.7563 36 1 5.8481 -5.1675 7.0176 37 1 1.9266 -5.5626 6.7791 38 1 0.4506 -4.9062 6.0316 39 1 0.2225 -7.3357 6.3062 40 1 0.3279 -6.9391 4.5742 41 1 1.8041 -8.7196 5.1705 42 1 1.5459 -6.1820 2.4442 43 1 2.9189 -5.0771 2.1931 44 1 0.0440 -4.6535 1.2548 45 1 1.4597 -4.9859 0.2261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098446166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:21 Heat of formation + Delta-G solvation = 14.619617 kcal Electronic energy + Delta-G solvation = -28943.505679 eV Core-core repulsion = 24998.204791 eV Total energy + Delta-G solvation = -3945.300888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.48568 -41.21209 -39.27927 -37.78415 -36.36619 -35.08733 -34.13928 -33.57768 -32.43012 -31.96815 -29.67090 -28.92623 -26.89669 -25.53207 -24.50135 -24.08884 -23.35875 -22.52219 -21.60861 -20.63909 -19.31286 -18.52067 -18.33610 -18.03296 -17.50461 -17.15386 -16.94075 -16.36407 -16.20546 -15.42910 -15.31803 -14.95480 -14.90852 -14.61690 -14.49375 -14.31467 -14.15309 -13.98262 -13.59540 -13.53466 -13.35358 -13.18646 -13.09661 -12.82001 -12.51473 -12.30715 -12.23821 -12.14135 -11.89519 -11.71089 -11.67676 -11.44354 -11.31714 -11.16378 -10.67147 -10.49837 -10.29610 -9.81348 -8.64638 -8.06284 -5.44222 0.06826 0.83774 1.21131 1.32517 1.41684 1.51511 1.60605 2.00749 2.49750 3.07791 3.12389 3.32168 3.36894 3.67072 3.75775 3.87090 4.04454 4.11990 4.16891 4.27044 4.41881 4.46438 4.54757 4.60775 4.62169 4.68193 4.73666 4.78276 4.79207 4.82114 4.89630 4.89931 5.02662 5.08322 5.17629 5.26313 5.37003 5.55067 5.55904 5.59670 6.05856 6.11183 6.30039 6.75541 7.09200 7.16157 7.22048 7.77221 8.14663 9.14573 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.004073 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.598186 B = 6872.421248 C = 7578.293644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.029 3.971 3 N -0.286 5.286 4 N -0.072 5.072 5 N -0.357 5.357 6 H 0.463 0.537 7 C -0.058 4.058 8 C 0.598 3.402 9 O -0.558 6.558 10 N -0.580 5.580 11 C 0.115 3.885 12 C -0.137 4.137 13 C 0.175 3.825 14 N -0.602 5.602 15 C -0.207 4.207 16 H 0.029 0.971 17 C -0.030 4.030 18 N -0.963 5.963 19 Si 0.942 3.058 20 H -0.284 1.284 21 H -0.324 1.324 22 H -0.243 1.243 23 C 0.115 3.885 24 C 0.062 3.938 25 O -0.581 6.581 26 C -0.128 4.128 27 C 0.123 3.877 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.095 0.905 36 H 0.254 0.746 37 H 0.033 0.967 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.377 0.623 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.109 0.891 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 5.128 -8.723 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 N -0.152 5.152 4 N -0.052 5.052 5 N -0.083 5.083 6 H 0.311 0.689 7 C -0.195 4.195 8 C 0.382 3.618 9 O -0.436 6.436 10 N -0.311 5.311 11 C -0.007 4.007 12 C -0.177 4.177 13 C 0.069 3.931 14 N -0.324 5.324 15 C -0.338 4.338 16 H 0.047 0.953 17 C -0.224 4.224 18 N -0.609 5.609 19 Si 0.772 3.228 20 H -0.212 1.212 21 H -0.254 1.254 22 H -0.167 1.167 23 C -0.010 4.010 24 C -0.017 4.017 25 O -0.386 6.386 26 C -0.168 4.168 27 C 0.001 3.999 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.223 0.777 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.127 0.873 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.137 6.719 -8.993 19.657 hybrid contribution 0.840 -1.729 0.878 2.113 sum -15.297 4.990 -8.114 18.021 Atomic orbital electron populations 1.20417 0.82701 1.04919 1.05314 1.22803 0.99760 0.86144 1.02393 1.74817 0.95554 1.26875 1.17971 1.78170 1.16070 0.92502 1.18430 1.45423 1.09048 1.06428 1.47399 0.68867 1.21846 0.86254 0.96411 1.14996 1.16844 0.77816 0.83553 0.83603 1.90837 1.56471 1.63298 1.32975 1.48095 1.61282 1.10365 1.11342 1.21922 1.02718 0.93765 0.82326 1.22190 0.99855 0.97949 0.97707 1.20594 0.96418 0.90040 0.86032 1.44167 1.01607 1.66270 1.20361 1.18230 0.82105 1.39427 0.93996 0.95306 1.26021 0.95619 1.00003 1.00759 1.70015 1.15073 1.49814 1.26011 0.85917 0.77732 0.79217 0.79933 1.21240 1.25368 1.16658 1.21590 0.95277 0.92950 0.91147 1.22886 0.87222 0.91929 0.99691 1.86841 1.34120 1.23843 1.93792 1.22186 0.99313 1.00150 0.95145 1.21800 1.01541 0.77764 0.98775 0.87599 0.88696 0.89677 0.90227 0.86561 0.91008 0.94672 0.88673 0.93757 0.94889 0.89368 0.92881 0.92477 0.77670 0.90831 0.95352 0.87270 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.28 71.24 0.73 -0.29 16 2 C 0.03 0.65 6.41 42.05 0.27 0.92 16 3 N -0.29 -7.62 12.35 -47.88 -0.59 -8.21 16 4 N -0.07 -1.94 13.35 37.02 0.49 -1.44 16 5 N -0.36 -8.54 7.07 -48.52 -0.34 -8.88 16 6 H 0.46 8.98 8.96 -219.90 -1.97 7.01 16 7 C -0.06 -1.41 5.43 40.41 0.22 -1.19 16 8 C 0.60 15.46 7.32 86.61 0.63 16.10 16 9 O -0.56 -17.92 16.54 -4.08 -0.07 -17.99 16 10 N -0.58 -13.09 2.98 -823.84 -2.45 -15.54 16 11 C 0.12 2.29 6.28 86.22 0.54 2.84 16 12 C -0.14 -3.98 5.29 30.53 0.16 -3.82 16 13 C 0.17 5.25 2.59 45.02 0.12 5.36 16 14 N -0.60 -24.35 1.96 -677.90 -1.33 -25.69 16 15 C -0.21 -11.01 8.50 84.03 0.71 -10.29 16 16 H 0.03 1.79 7.04 -2.91 -0.02 1.76 16 17 C -0.03 -1.72 5.31 84.86 0.45 -1.27 16 18 N -0.96 -61.26 13.97 21.65 0.30 -60.96 16 19 Si 0.94 45.24 24.95 68.60 1.71 46.95 16 20 H -0.28 -13.33 6.62 99.48 0.66 -12.67 16 21 H -0.32 -16.39 7.11 99.48 0.71 -15.68 16 22 H -0.24 -10.36 7.11 99.48 0.71 -9.65 16 23 C 0.12 4.20 4.57 86.38 0.39 4.59 16 24 C 0.06 1.90 7.39 71.98 0.53 2.43 16 25 O -0.58 -22.06 13.39 -148.98 -2.00 -24.05 16 26 C -0.13 -3.78 5.30 30.68 0.16 -3.61 16 27 C 0.12 2.72 6.42 86.37 0.55 3.28 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.05 8.02 -2.39 -0.02 1.03 16 31 H 0.08 1.61 5.70 -2.39 -0.01 1.60 16 32 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.03 1.30 7.71 -2.39 -0.02 1.29 16 35 H 0.10 2.15 7.88 -2.39 -0.02 2.13 16 36 H 0.25 15.57 8.31 -92.70 -0.77 14.80 16 37 H 0.03 1.45 3.42 -2.39 -0.01 1.44 16 38 H 0.09 2.51 8.06 -2.39 -0.02 2.50 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.38 9.99 9.12 -74.05 -0.68 9.32 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.03 1.08 7.06 -2.39 -0.02 1.06 16 44 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.08 2.01 7.03 -2.39 -0.02 1.99 16 Total: -1.00 -80.29 361.94 -0.44 -80.73 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -1.65 Total: 20.03 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 5.48 Total: 15.04 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -3.92 Total: -120.72 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -2.06 Total: -42.04 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.71 Total: 46.95 kcal Total: -80.29 -0.44 -80.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098446166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.348 kcal (2) G-P(sol) polarization free energy of solvation -80.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds