Wall clock time and date at job start Fri Apr 10 2020 18:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30454 * 125.98826 * 2 1 4 4 N 1.39935 * 108.89599 * 179.73688 * 3 2 1 5 5 H 0.97000 * 125.75050 * 180.02562 * 4 3 2 6 6 C 1.34254 * 108.49124 * 359.97438 * 4 3 2 7 7 C 1.50699 * 126.28747 * 179.97438 * 6 4 3 8 8 C 1.38048 * 107.42037 * 0.02562 * 6 4 3 9 9 C 1.47425 * 126.41140 * 180.02562 * 8 6 4 10 10 O 1.21605 * 119.99992 * 269.97157 * 9 8 6 11 11 N 1.34774 * 120.00566 * 89.98268 * 9 8 6 12 12 C 1.46498 * 120.00509 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47320 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47358 * 180.02562 * 13 12 11 15 15 N 1.46895 * 109.47369 * 179.97438 * 14 13 12 16 16 C 1.46905 * 111.00272 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47263 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00039 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99775 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00037 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99858 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00310 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00182 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00057 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47118 * 89.99656 * 24 22 20 26 26 H 1.48494 * 109.47103 * 210.00015 * 24 22 20 27 27 H 1.48494 * 109.46927 * 329.99989 * 24 22 20 28 28 H 1.08995 * 109.46918 * 90.02408 * 1 2 3 29 29 H 1.08998 * 109.46668 * 210.02685 * 1 2 3 30 30 H 1.09000 * 109.46714 * 330.02353 * 1 2 3 31 31 H 1.09005 * 109.47443 * 90.03149 * 7 6 4 32 32 H 1.09005 * 109.47503 * 210.02440 * 7 6 4 33 33 H 1.08998 * 109.47743 * 330.02682 * 7 6 4 34 34 H 0.97010 * 119.99436 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.46737 * 299.99586 * 12 11 9 36 36 H 1.09001 * 109.47083 * 59.99935 * 12 11 9 37 37 H 1.09009 * 109.47048 * 300.00018 * 13 12 11 38 38 H 1.08997 * 109.47732 * 59.99664 * 13 12 11 39 39 H 1.09004 * 109.46996 * 299.99443 * 14 13 12 40 40 H 1.09001 * 109.47212 * 59.99855 * 14 13 12 41 41 H 1.00904 * 110.99921 * 56.04813 * 15 14 13 42 42 H 1.08996 * 109.47270 * 300.00711 * 16 15 14 43 43 H 1.09003 * 109.46729 * 60.00249 * 16 15 14 44 44 H 0.96996 * 120.00636 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00237 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6112 0.6443 0.0061 5 1 4.3842 1.2302 0.0077 6 6 3.6439 -0.6979 0.0104 7 6 4.8800 -1.5598 0.0170 8 6 2.3373 -1.1432 0.0065 9 6 1.8917 -2.5485 0.0096 10 8 1.7118 -3.1316 -1.0422 11 7 1.6834 -3.1869 1.1781 12 6 1.2401 -4.5832 1.1812 13 6 1.0811 -5.0647 2.6247 14 6 0.6187 -6.5231 2.6280 15 7 0.4666 -6.9855 4.0139 16 6 0.0221 -8.3851 4.0562 17 6 -0.1230 -8.8229 5.4908 18 8 0.1194 -8.0455 6.3897 19 7 -0.5223 -10.0784 5.7751 20 6 -0.6549 -10.4766 7.0802 21 1 -0.4398 -9.7841 7.8806 22 6 -1.0670 -11.7708 7.3733 23 7 -1.1945 -12.1523 8.6243 24 14 -1.4398 -12.9684 5.9890 25 1 -0.2040 -13.7091 5.6291 26 1 -2.4813 -13.9292 6.4328 27 1 -1.9302 -12.2188 4.8047 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 5.1746 -1.7649 1.0462 32 1 4.6708 -2.4992 -0.4950 33 1 5.6889 -1.0391 -0.4955 34 1 1.8271 -2.7218 2.0172 35 1 0.2838 -4.6618 0.6642 36 1 1.9803 -5.2005 0.6722 37 1 2.0377 -4.9860 3.1415 38 1 0.3412 -4.4475 3.1343 39 1 -0.3378 -6.6021 2.1112 40 1 1.3590 -7.1401 2.1186 41 1 -0.1663 -6.3898 4.5264 42 1 -0.9387 -8.4766 3.5497 43 1 0.7578 -9.0151 3.5563 44 1 -0.7159 -10.7003 5.0563 45 1 -1.4819 -13.0559 8.8289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168570367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:09 Heat of formation + Delta-G solvation = -8.613952 kcal Electronic energy + Delta-G solvation = -25588.352582 eV Core-core repulsion = 21642.044211 eV Total energy + Delta-G solvation = -3946.308371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89510 -39.48081 -38.50746 -36.59591 -34.87450 -34.01852 -33.89931 -32.38226 -31.69324 -31.18492 -28.72701 -27.88720 -27.13589 -24.93804 -23.41124 -22.31246 -21.76465 -20.62915 -19.97081 -19.36469 -18.37271 -18.15518 -16.77860 -16.58431 -16.20072 -15.91053 -15.46031 -15.34610 -14.92986 -14.56903 -14.36870 -14.13806 -14.03678 -13.83636 -13.65278 -13.46343 -13.16519 -12.98467 -12.90995 -12.85575 -12.47467 -12.37141 -12.13828 -11.92073 -11.72758 -11.54141 -11.27351 -11.18730 -11.01090 -10.59799 -10.23934 -9.98028 -9.84569 -9.57828 -9.34617 -9.08149 -8.60927 -8.20719 -8.15756 -6.31571 -3.83123 1.22191 1.99122 2.21249 2.30972 3.01699 3.02400 3.06981 3.15089 3.73412 3.98180 4.06421 4.10655 4.19127 4.42932 4.67807 4.75922 4.80243 4.83240 4.88234 4.99877 5.06790 5.21051 5.21547 5.22650 5.27818 5.36112 5.44696 5.45369 5.48366 5.57292 5.62789 5.80105 5.90044 5.94315 5.99954 6.01609 6.16333 6.66945 7.06217 7.11934 7.22242 7.54488 7.57944 7.95881 8.13931 8.59257 8.94417 9.41951 9.82088 10.81509 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029927 B = 0.001602 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.371670 B =17472.461306 C =17529.524640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.118 3.882 3 N -0.294 5.294 4 N -0.462 5.462 5 H 0.442 0.558 6 C 0.134 3.866 7 C -0.102 4.102 8 C -0.287 4.287 9 C 0.598 3.402 10 O -0.535 6.535 11 N -0.721 5.721 12 C 0.120 3.880 13 C -0.129 4.129 14 C 0.062 3.938 15 N -0.670 5.670 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.474 22.199 -20.642 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 N -0.117 5.117 4 N -0.168 5.168 5 H 0.287 0.713 6 C 0.002 3.998 7 C -0.160 4.160 8 C -0.302 4.302 9 C 0.383 3.617 10 O -0.411 6.411 11 N -0.372 5.372 12 C -0.004 4.004 13 C -0.168 4.168 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.237 0.763 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.170 0.830 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.114 23.218 -20.554 32.320 hybrid contribution -0.737 -1.361 -0.836 1.759 sum 8.376 21.858 -21.389 31.708 Atomic orbital electron populations 1.20283 0.85968 1.03773 1.03746 1.22356 0.97019 0.88790 0.96788 1.77121 0.86139 1.22133 1.26323 1.45996 1.07674 1.04745 1.58435 0.71320 1.21411 0.96160 0.85054 0.97201 1.20615 0.92157 0.98981 1.04259 1.19849 0.92191 0.94243 1.23887 1.17270 0.76470 0.84454 0.83523 1.90800 1.51037 1.67651 1.31603 1.46050 1.68938 1.13637 1.08607 1.21354 1.00486 0.81185 0.97390 1.21743 1.03415 0.96453 0.95158 1.21833 0.99818 0.94812 0.90307 1.60053 1.55739 1.02503 1.11919 1.21705 0.99340 0.90920 0.96526 1.19715 0.83772 0.83132 0.89866 1.90562 1.53641 1.52834 1.47691 1.42208 1.61394 1.11241 1.08149 1.19434 1.43069 0.98220 0.82716 0.86284 1.25040 0.97567 0.97067 0.96491 1.69620 1.46298 1.19228 1.16973 0.86663 0.79130 0.81747 0.81793 1.19584 1.20190 1.19518 0.89816 0.90250 0.90150 0.89131 0.89048 0.90219 0.76274 0.91314 0.91141 0.90070 0.91149 0.95166 0.90744 0.83008 0.93687 0.89408 0.79665 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.28 36.01 0.37 -0.18 16 2 C 0.12 1.10 7.26 -82.02 -0.60 0.50 16 3 N -0.29 -2.79 12.63 33.90 0.43 -2.36 16 4 N -0.46 -3.09 7.29 33.86 0.25 -2.85 16 5 H 0.44 1.44 8.96 -182.72 -1.64 -0.20 16 6 C 0.13 0.96 7.29 -81.60 -0.60 0.36 16 7 C -0.10 -0.43 10.25 36.01 0.37 -0.06 16 8 C -0.29 -2.66 5.88 -105.07 -0.62 -3.28 16 9 C 0.60 6.19 6.97 -12.52 -0.09 6.10 16 10 O -0.53 -7.58 17.11 5.27 0.09 -7.49 16 11 N -0.72 -5.74 5.55 -61.39 -0.34 -6.08 16 12 C 0.12 0.99 5.67 -4.04 -0.02 0.97 16 13 C -0.13 -1.08 5.59 -26.74 -0.15 -1.23 16 14 C 0.06 0.65 5.68 -3.83 -0.02 0.63 16 15 N -0.67 -9.80 6.13 -115.06 -0.71 -10.51 16 16 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 17 C 0.45 10.09 7.82 -10.99 -0.09 10.01 16 18 O -0.57 -15.05 15.78 5.55 0.09 -14.96 16 19 N -0.59 -13.97 5.09 -10.97 -0.06 -14.03 16 20 C -0.31 -8.62 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 24 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.51 8.00 -51.93 -0.42 0.10 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.49 7.96 -51.93 -0.41 0.08 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.40 2.48 8.46 -40.82 -0.35 2.13 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.35 5.29 8.43 -39.29 -0.33 4.96 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -37.15 387.51 -8.07 -45.23 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.01 Total: 10.74 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.72 Total: 6.81 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.35 Total: -60.70 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.18 Total: -22.45 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.15 -8.07 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168570367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.612 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds