Wall clock time and date at job start Fri Apr 10 2020 18:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30454 * 125.98826 * 2 1 4 4 N 1.39935 * 108.89599 * 179.73688 * 3 2 1 5 5 H 0.97000 * 125.75050 * 180.02562 * 4 3 2 6 6 C 1.34254 * 108.49124 * 359.97438 * 4 3 2 7 7 C 1.50699 * 126.28747 * 179.97438 * 6 4 3 8 8 C 1.38048 * 107.42037 * 0.02562 * 6 4 3 9 9 C 1.47425 * 126.41140 * 180.02562 * 8 6 4 10 10 O 1.21605 * 119.99992 * 269.97157 * 9 8 6 11 11 N 1.34774 * 120.00566 * 89.98268 * 9 8 6 12 12 C 1.46498 * 120.00509 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47320 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47358 * 180.02562 * 13 12 11 15 15 N 1.46895 * 109.47369 * 179.97438 * 14 13 12 16 16 C 1.46905 * 111.00272 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47263 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00039 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99775 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00037 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99858 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00310 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00182 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00057 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47118 * 89.99656 * 24 22 20 26 26 H 1.48494 * 109.47103 * 210.00015 * 24 22 20 27 27 H 1.48494 * 109.46927 * 329.99989 * 24 22 20 28 28 H 1.08995 * 109.46918 * 90.02408 * 1 2 3 29 29 H 1.08998 * 109.46668 * 210.02685 * 1 2 3 30 30 H 1.09000 * 109.46714 * 330.02353 * 1 2 3 31 31 H 1.09005 * 109.47443 * 90.03149 * 7 6 4 32 32 H 1.09005 * 109.47503 * 210.02440 * 7 6 4 33 33 H 1.08998 * 109.47743 * 330.02682 * 7 6 4 34 34 H 0.97010 * 119.99436 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.46737 * 299.99586 * 12 11 9 36 36 H 1.09001 * 109.47083 * 59.99935 * 12 11 9 37 37 H 1.09009 * 109.47048 * 300.00018 * 13 12 11 38 38 H 1.08997 * 109.47732 * 59.99664 * 13 12 11 39 39 H 1.09004 * 109.46996 * 299.99443 * 14 13 12 40 40 H 1.09001 * 109.47212 * 59.99855 * 14 13 12 41 41 H 1.00904 * 110.99921 * 56.04813 * 15 14 13 42 42 H 1.08996 * 109.47270 * 300.00711 * 16 15 14 43 43 H 1.09003 * 109.46729 * 60.00249 * 16 15 14 44 44 H 0.96996 * 120.00636 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00237 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6112 0.6443 0.0061 5 1 4.3842 1.2302 0.0077 6 6 3.6439 -0.6979 0.0104 7 6 4.8800 -1.5598 0.0170 8 6 2.3373 -1.1432 0.0065 9 6 1.8917 -2.5485 0.0096 10 8 1.7118 -3.1316 -1.0422 11 7 1.6834 -3.1869 1.1781 12 6 1.2401 -4.5832 1.1812 13 6 1.0811 -5.0647 2.6247 14 6 0.6187 -6.5231 2.6280 15 7 0.4666 -6.9855 4.0139 16 6 0.0221 -8.3851 4.0562 17 6 -0.1230 -8.8229 5.4908 18 8 0.1194 -8.0455 6.3897 19 7 -0.5223 -10.0784 5.7751 20 6 -0.6549 -10.4766 7.0802 21 1 -0.4398 -9.7841 7.8806 22 6 -1.0670 -11.7708 7.3733 23 7 -1.1945 -12.1523 8.6243 24 14 -1.4398 -12.9684 5.9890 25 1 -0.2040 -13.7091 5.6291 26 1 -2.4813 -13.9292 6.4328 27 1 -1.9302 -12.2188 4.8047 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 5.1746 -1.7649 1.0462 32 1 4.6708 -2.4992 -0.4950 33 1 5.6889 -1.0391 -0.4955 34 1 1.8271 -2.7218 2.0172 35 1 0.2838 -4.6618 0.6642 36 1 1.9803 -5.2005 0.6722 37 1 2.0377 -4.9860 3.1415 38 1 0.3412 -4.4475 3.1343 39 1 -0.3378 -6.6021 2.1112 40 1 1.3590 -7.1401 2.1186 41 1 -0.1663 -6.3898 4.5264 42 1 -0.9387 -8.4766 3.5497 43 1 0.7578 -9.0151 3.5563 44 1 -0.7159 -10.7003 5.0563 45 1 -1.4819 -13.0559 8.8289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168570367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:09 Heat of formation + Delta-G solvation = -40.683650 kcal Electronic energy + Delta-G solvation = -25589.743229 eV Core-core repulsion = 21642.044211 eV Total energy + Delta-G solvation = -3947.699018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.49613 -40.33516 -40.20694 -37.59817 -36.10294 -35.60567 -34.56367 -33.74409 -33.04528 -32.01860 -29.36130 -28.69623 -28.15425 -26.35683 -24.65386 -23.08538 -22.52192 -21.27951 -21.21338 -20.66340 -20.20232 -18.80627 -17.83690 -17.44639 -17.25744 -17.01965 -16.75028 -16.30621 -16.06070 -15.70185 -15.48485 -15.14594 -14.94063 -14.78768 -14.58374 -14.37803 -14.25675 -14.16847 -13.97216 -13.40985 -13.37834 -13.34509 -13.19314 -12.98508 -12.86264 -12.66914 -12.40317 -12.37259 -11.96623 -11.91135 -11.78799 -11.49979 -11.05922 -10.42820 -10.42565 -10.23616 -10.08656 -9.70384 -9.30023 -8.40210 -6.01208 0.65982 1.31817 1.33964 1.37283 1.46058 1.53054 1.72777 1.97141 2.24326 2.31254 2.79100 3.16258 3.44589 3.49204 3.63345 3.98775 4.04640 4.08438 4.17785 4.22029 4.31525 4.32498 4.47451 4.59438 4.61140 4.62638 4.68290 4.69902 4.76091 4.83498 4.87546 4.97904 5.02346 5.21407 5.26013 5.42145 5.46708 5.53971 5.92138 6.07340 6.23932 6.42147 6.52974 6.55079 6.61049 6.89260 7.22818 7.41167 7.97715 8.77367 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029927 B = 0.001602 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.371670 B =17472.461306 C =17529.524640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.107 3.893 3 N -0.321 5.321 4 N -0.452 5.452 5 H 0.456 0.544 6 C 0.146 3.854 7 C -0.100 4.100 8 C -0.317 4.317 9 C 0.604 3.396 10 O -0.579 6.579 11 N -0.708 5.708 12 C 0.126 3.874 13 C -0.117 4.117 14 C 0.064 3.936 15 N -0.688 5.688 16 C 0.061 3.939 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.231 1.231 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.413 0.587 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.345 0.655 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 21.802 -23.544 33.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.060 4.060 3 N -0.144 5.144 4 N -0.160 5.160 5 H 0.304 0.696 6 C 0.012 3.988 7 C -0.158 4.158 8 C -0.331 4.331 9 C 0.390 3.610 10 O -0.458 6.458 11 N -0.359 5.359 12 C 0.002 3.998 13 C -0.155 4.155 14 C -0.066 4.066 15 N -0.321 5.321 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.154 1.154 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.249 0.751 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.163 0.837 42 H 0.095 0.905 43 H 0.133 0.867 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.566 22.865 -23.456 34.125 hybrid contribution -0.787 -1.107 0.169 1.369 sum 8.779 21.759 -23.287 33.057 Atomic orbital electron populations 1.20340 0.85032 1.04405 1.03988 1.22679 0.97934 0.88795 0.96606 1.77058 0.87290 1.22676 1.27414 1.46015 1.07476 1.04958 1.57532 0.69600 1.21818 0.96501 0.85328 0.95172 1.20733 0.91479 0.98080 1.05528 1.19913 0.93318 0.93700 1.26215 1.17381 0.75679 0.84709 0.83235 1.90772 1.53227 1.68712 1.33136 1.45956 1.67796 1.13543 1.08564 1.21266 1.00266 0.81144 0.97121 1.21599 1.03337 0.95517 0.95068 1.21912 1.00898 0.95760 0.87988 1.60059 1.55756 1.01783 1.14475 1.21634 1.01949 0.92102 0.91406 1.21038 0.81003 0.81994 0.92427 1.90540 1.55010 1.54117 1.50264 1.42040 1.62154 1.12327 1.06772 1.19017 1.45112 0.98107 0.83670 0.92669 1.26123 0.96329 0.98912 1.00036 1.69804 1.47253 1.20230 1.20218 0.85356 0.79345 0.78290 0.78473 1.18174 1.20096 1.15377 0.89726 0.89945 0.89160 0.87404 0.90203 0.87767 0.75077 0.91612 0.91370 0.90349 0.90686 0.93717 0.89866 0.83658 0.90516 0.86739 0.77439 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.28 71.24 0.73 -0.35 16 2 C 0.11 1.95 7.26 43.51 0.32 2.26 16 3 N -0.32 -5.87 12.63 -46.67 -0.59 -6.45 16 4 N -0.45 -5.44 7.29 -46.80 -0.34 -5.78 16 5 H 0.46 2.20 8.96 -213.43 -1.91 0.29 16 6 C 0.15 1.88 7.29 42.14 0.31 2.18 16 7 C -0.10 -0.63 10.25 71.24 0.73 0.10 16 8 C -0.32 -5.67 5.88 -20.15 -0.12 -5.79 16 9 C 0.60 12.14 6.97 86.66 0.60 12.74 16 10 O -0.58 -16.36 17.11 -4.05 -0.07 -16.43 16 11 N -0.71 -10.37 5.55 -466.38 -2.59 -12.96 16 12 C 0.13 1.86 5.67 86.38 0.49 2.35 16 13 C -0.12 -1.70 5.59 30.59 0.17 -1.53 16 14 C 0.06 1.13 5.68 86.30 0.49 1.62 16 15 N -0.69 -18.61 6.13 -517.94 -3.17 -21.78 16 16 C 0.06 1.78 6.17 85.56 0.53 2.31 16 17 C 0.45 19.84 7.82 87.66 0.69 20.52 16 18 O -0.61 -33.66 15.78 -3.06 -0.05 -33.71 16 19 N -0.59 -27.55 5.09 -306.99 -1.56 -29.11 16 20 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 21 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.16 13.96 21.66 0.30 -55.86 16 24 Si 0.97 38.41 27.74 68.60 1.90 40.31 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.03 8.00 -2.39 -0.02 1.01 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.08 0.75 7.96 -2.38 -0.02 0.73 16 33 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.41 4.47 8.46 -92.70 -0.78 3.69 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.34 9.95 8.43 -89.69 -0.76 9.20 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 45 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -86.35 387.51 -2.90 -89.25 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -2.99 Total: 34.89 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 6.26 Total: 17.64 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -7.95 Total: -131.96 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.12 Total: -50.14 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.31 kcal Total: -86.35 -2.90 -89.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168570367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.568 kcal (2) G-P(sol) polarization free energy of solvation -86.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds