Wall clock time and date at job start Fri Apr 10 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48504 * 109.47108 * 239.99604 * 3 2 1 5 5 H 1.48492 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47044 * 120.00333 * 3 2 1 7 7 C 1.38813 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00497 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00246 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00360 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47342 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47639 * 179.97438 * 11 10 9 13 13 N 1.46492 * 109.47424 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00113 * 180.02562 * 13 12 11 15 15 O 1.21595 * 119.99630 * 0.02562 * 14 13 12 16 16 C 1.47522 * 120.00280 * 179.97438 * 14 13 12 17 17 C 1.36589 * 125.77161 * 179.97438 * 16 14 13 18 18 N 1.34817 * 106.83946 * 180.02562 * 17 16 14 19 19 C 1.46502 * 126.59606 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46966 * 125.00299 * 19 18 17 21 21 H 1.08994 * 110.45373 * 52.39654 * 20 19 18 22 22 C 1.54504 * 110.51056 * 175.00200 * 20 19 18 23 23 C 1.54479 * 104.06436 * 118.64486 * 22 20 19 24 24 O 1.44427 * 104.79848 * 23.97882 * 23 22 20 25 25 C 1.44419 * 105.27645 * 319.48457 * 24 23 22 26 26 N 1.40212 * 106.81108 * 0.02562 * 18 17 16 27 27 N 1.28764 * 108.36638 * 359.97438 * 26 18 17 28 28 H 0.96999 * 119.99889 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99414 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47388 * 59.99331 * 10 9 7 31 31 H 1.08997 * 109.46987 * 299.99514 * 10 9 7 32 32 H 1.08999 * 109.47099 * 59.99553 * 11 10 9 33 33 H 1.09002 * 109.47233 * 300.00286 * 11 10 9 34 34 H 1.08999 * 109.46895 * 59.99851 * 12 11 10 35 35 H 1.08996 * 109.46725 * 300.00489 * 12 11 10 36 36 H 0.97004 * 120.00086 * 0.02562 * 13 12 11 37 37 H 1.07995 * 126.58206 * 0.02562 * 17 16 14 38 38 H 1.08996 * 109.47570 * 245.00869 * 19 18 17 39 39 H 1.09006 * 109.46931 * 5.00745 * 19 18 17 40 40 H 1.08993 * 110.51436 * 237.29449 * 22 20 19 41 41 H 1.09002 * 110.51547 * 0.02562 * 22 20 19 42 42 H 1.09000 * 110.37219 * 142.80665 * 23 22 20 43 43 H 1.08995 * 110.37257 * 265.14931 * 23 22 20 44 44 H 1.08997 * 110.37570 * 281.68221 * 25 24 23 45 45 H 1.09002 * 110.36905 * 159.34420 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8287 -6.1448 -0.0029 13 7 0.8767 -7.2582 -0.0029 14 6 1.3259 -8.5290 -0.0029 15 8 2.5214 -8.7511 -0.0024 16 6 0.3673 -9.6503 -0.0023 17 6 0.6908 -10.9773 -0.0028 18 7 -0.4704 -11.6623 -0.0025 19 6 -0.6250 -13.1192 -0.0034 20 6 -1.5010 -13.5397 1.1785 21 1 -2.4347 -12.9775 1.1795 22 6 -1.7832 -15.0580 1.1299 23 6 -1.1639 -15.5971 2.4384 24 8 -1.1410 -14.4617 3.3308 25 6 -0.7445 -13.3410 2.5106 26 7 -1.5016 -10.7124 -0.0026 27 7 -0.9721 -9.5387 -0.0022 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6841 -3.7150 0.8888 31 1 2.6853 -3.7142 -0.8911 32 1 0.4374 -4.7618 -0.8924 33 1 0.4367 -4.7622 0.8875 34 1 2.4553 -6.2030 0.8871 35 1 2.4554 -6.2020 -0.8928 36 1 -0.0770 -7.0810 -0.0029 37 1 1.6858 -11.3972 -0.0032 38 1 -1.0955 -13.4341 -0.9347 39 1 0.3549 -13.5885 0.0855 40 1 -2.8565 -15.2465 1.1093 41 1 -1.2983 -15.5092 0.2641 42 1 -1.7838 -16.3924 2.8521 43 1 -0.1515 -15.9586 2.2583 44 1 0.3322 -13.3566 2.3416 45 1 -1.0423 -12.4033 2.9799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169585982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:11 Heat of formation + Delta-G solvation = 20.107940 kcal Electronic energy + Delta-G solvation = -25713.764446 eV Core-core repulsion = 21768.701549 eV Total energy + Delta-G solvation = -3945.062897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59539 -40.15640 -39.38536 -36.01157 -35.84302 -34.32280 -32.89617 -32.02228 -31.21503 -30.10397 -29.38321 -27.18046 -25.50029 -23.86753 -23.60189 -22.60416 -22.26664 -21.36267 -21.11793 -20.20865 -18.50556 -17.31368 -16.93172 -16.79671 -16.28808 -16.17673 -16.08464 -15.84776 -15.49776 -14.95614 -14.73710 -14.60530 -14.10462 -14.00761 -13.69513 -13.39116 -13.22780 -12.96182 -12.63025 -12.48511 -12.39715 -12.13097 -11.90727 -11.70639 -11.56758 -11.35087 -10.91948 -10.87581 -10.77630 -10.75618 -10.56734 -10.46848 -10.24504 -10.02040 -9.66921 -9.65322 -9.02070 -8.83678 -6.89402 -5.73137 -3.02079 0.75460 1.45416 1.53908 3.06724 3.15661 3.22311 3.47494 3.51397 3.52790 3.58181 3.72755 3.92994 4.00942 4.14241 4.29999 4.40998 4.51032 4.54176 4.59203 4.62488 4.65948 4.89367 4.98723 5.08290 5.10653 5.16486 5.23192 5.34160 5.35799 5.46966 5.61186 5.68059 5.90001 6.00863 6.09389 6.10854 6.24091 6.37071 6.45039 6.83763 6.87977 7.37242 7.66198 7.73131 8.10083 8.45773 9.56711 10.14423 10.49051 11.49752 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034449 B = 0.001580 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.592135 B =17717.917855 C =17884.199907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.139 4.139 12 C 0.123 3.877 13 N -0.710 5.710 14 C 0.601 3.399 15 O -0.542 6.542 16 C -0.097 4.097 17 C 0.092 3.908 18 N -0.364 5.364 19 C 0.131 3.869 20 C -0.139 4.139 21 H 0.105 0.895 22 C -0.147 4.147 23 C 0.042 3.958 24 O -0.370 6.370 25 C 0.049 3.951 26 N -0.061 5.061 27 N -0.201 5.201 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.409 0.591 37 H 0.205 0.795 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -37.314 0.600 37.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.177 4.177 12 C 0.000 4.000 13 N -0.360 5.360 14 C 0.385 3.615 15 O -0.419 6.419 16 C -0.236 4.236 17 C -0.064 4.064 18 N -0.149 5.149 19 C 0.010 3.990 20 C -0.158 4.158 21 H 0.123 0.877 22 C -0.185 4.185 23 C -0.035 4.035 24 O -0.289 6.289 25 C -0.028 4.028 26 N -0.041 5.041 27 N -0.075 5.075 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.245 0.755 37 H 0.222 0.778 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.346 -37.137 0.826 37.296 hybrid contribution 0.739 0.702 -0.306 1.064 sum -2.607 -36.435 0.520 36.532 Atomic orbital electron populations 1.69653 1.05121 1.25762 1.57732 1.24750 0.95544 0.97723 1.03005 0.86242 0.78493 0.83443 0.77859 1.21259 1.21689 1.21251 1.19208 0.91073 0.84158 1.42784 0.91146 1.42332 1.05892 0.99958 1.89604 1.20515 0.93247 0.85186 0.98191 1.21956 0.99612 0.93152 1.02989 1.21426 0.91589 0.84358 1.02671 1.45880 1.11531 1.05112 1.73466 1.16739 0.86354 0.81762 0.76663 1.90814 1.15095 1.84666 1.51309 1.21538 0.91071 0.94017 1.17011 1.23387 0.93031 0.92079 0.97932 1.50521 1.05554 1.08829 1.49980 1.22169 1.02844 0.73284 1.00735 1.22931 1.00708 0.97817 0.94348 0.87659 1.22960 1.03162 0.93174 0.99204 1.23473 1.00600 0.90189 0.89246 1.89197 1.89598 1.17544 1.32515 1.23509 0.98100 0.91305 0.89866 1.82005 1.09588 0.90110 1.22431 1.74683 1.07039 1.16058 1.09706 0.93475 0.78257 0.96044 0.96038 0.91149 0.91133 0.91040 0.91043 0.75538 0.77845 0.87706 0.87368 0.89561 0.89767 0.88643 0.91938 0.92004 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 10 C 0.16 3.17 6.26 -4.05 -0.03 3.15 16 11 C -0.14 -2.20 5.44 -26.73 -0.15 -2.35 16 12 C 0.12 1.71 5.67 -4.05 -0.02 1.69 16 13 N -0.71 -9.16 5.55 -61.36 -0.34 -9.50 16 14 C 0.60 7.99 7.82 -12.48 -0.10 7.90 16 15 O -0.54 -8.45 16.86 5.28 0.09 -8.37 16 16 C -0.10 -1.08 6.99 -83.55 -0.58 -1.67 16 17 C 0.09 0.71 11.27 -16.84 -0.19 0.52 16 18 N -0.36 -2.49 3.58 -61.06 -0.22 -2.71 16 19 C 0.13 0.37 5.69 -4.04 -0.02 0.34 16 20 C -0.14 -0.53 3.24 -89.05 -0.29 -0.82 16 21 H 0.11 0.57 8.06 -51.93 -0.42 0.15 16 22 C -0.15 -0.32 6.74 -25.17 -0.17 -0.48 16 23 C 0.04 0.15 7.63 37.93 0.29 0.44 16 24 O -0.37 -2.74 11.65 -35.23 -0.41 -3.15 16 25 C 0.05 0.28 7.08 37.93 0.27 0.55 16 26 N -0.06 -0.63 13.58 60.35 0.82 0.18 16 27 N -0.20 -2.40 12.04 32.85 0.40 -2.00 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.38 10.36 7.67 -40.82 -0.31 10.04 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.41 4.86 8.16 -40.82 -0.33 4.52 16 37 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.11 0.02 7.90 -51.93 -0.41 -0.39 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.08 0.01 7.73 -51.93 -0.40 -0.39 16 42 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.06 0.28 7.74 -51.93 -0.40 -0.12 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -36.08 383.15 -6.66 -42.74 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.90 Total: 4.88 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.24 Total: 1.70 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 1.04 Total: -61.28 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.32 Total: -11.52 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.08 -6.66 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169585982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.850 kcal (2) G-P(sol) polarization free energy of solvation -36.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds