Wall clock time and date at job start Fri Apr 10 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48504 * 109.47108 * 239.99604 * 3 2 1 5 5 H 1.48492 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47044 * 120.00333 * 3 2 1 7 7 C 1.38813 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00497 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00246 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00360 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47342 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47639 * 179.97438 * 11 10 9 13 13 N 1.46492 * 109.47424 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00113 * 180.02562 * 13 12 11 15 15 O 1.21595 * 119.99630 * 0.02562 * 14 13 12 16 16 C 1.47522 * 120.00280 * 179.97438 * 14 13 12 17 17 C 1.36589 * 125.77161 * 179.97438 * 16 14 13 18 18 N 1.34817 * 106.83946 * 180.02562 * 17 16 14 19 19 C 1.46502 * 126.59606 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46966 * 125.00299 * 19 18 17 21 21 H 1.08994 * 110.45373 * 52.39654 * 20 19 18 22 22 C 1.54504 * 110.51056 * 175.00200 * 20 19 18 23 23 C 1.54479 * 104.06436 * 118.64486 * 22 20 19 24 24 O 1.44427 * 104.79848 * 23.97882 * 23 22 20 25 25 C 1.44419 * 105.27645 * 319.48457 * 24 23 22 26 26 N 1.40212 * 106.81108 * 0.02562 * 18 17 16 27 27 N 1.28764 * 108.36638 * 359.97438 * 26 18 17 28 28 H 0.96999 * 119.99889 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99414 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47388 * 59.99331 * 10 9 7 31 31 H 1.08997 * 109.46987 * 299.99514 * 10 9 7 32 32 H 1.08999 * 109.47099 * 59.99553 * 11 10 9 33 33 H 1.09002 * 109.47233 * 300.00286 * 11 10 9 34 34 H 1.08999 * 109.46895 * 59.99851 * 12 11 10 35 35 H 1.08996 * 109.46725 * 300.00489 * 12 11 10 36 36 H 0.97004 * 120.00086 * 0.02562 * 13 12 11 37 37 H 1.07995 * 126.58206 * 0.02562 * 17 16 14 38 38 H 1.08996 * 109.47570 * 245.00869 * 19 18 17 39 39 H 1.09006 * 109.46931 * 5.00745 * 19 18 17 40 40 H 1.08993 * 110.51436 * 237.29449 * 22 20 19 41 41 H 1.09002 * 110.51547 * 0.02562 * 22 20 19 42 42 H 1.09000 * 110.37219 * 142.80665 * 23 22 20 43 43 H 1.08995 * 110.37257 * 265.14931 * 23 22 20 44 44 H 1.08997 * 110.37570 * 281.68221 * 25 24 23 45 45 H 1.09002 * 110.36905 * 159.34420 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8287 -6.1448 -0.0029 13 7 0.8767 -7.2582 -0.0029 14 6 1.3259 -8.5290 -0.0029 15 8 2.5214 -8.7511 -0.0024 16 6 0.3673 -9.6503 -0.0023 17 6 0.6908 -10.9773 -0.0028 18 7 -0.4704 -11.6623 -0.0025 19 6 -0.6250 -13.1192 -0.0034 20 6 -1.5010 -13.5397 1.1785 21 1 -2.4347 -12.9775 1.1795 22 6 -1.7832 -15.0580 1.1299 23 6 -1.1639 -15.5971 2.4384 24 8 -1.1410 -14.4617 3.3308 25 6 -0.7445 -13.3410 2.5106 26 7 -1.5016 -10.7124 -0.0026 27 7 -0.9721 -9.5387 -0.0022 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6841 -3.7150 0.8888 31 1 2.6853 -3.7142 -0.8911 32 1 0.4374 -4.7618 -0.8924 33 1 0.4367 -4.7622 0.8875 34 1 2.4553 -6.2030 0.8871 35 1 2.4554 -6.2020 -0.8928 36 1 -0.0770 -7.0810 -0.0029 37 1 1.6858 -11.3972 -0.0032 38 1 -1.0955 -13.4341 -0.9347 39 1 0.3549 -13.5885 0.0855 40 1 -2.8565 -15.2465 1.1093 41 1 -1.2983 -15.5092 0.2641 42 1 -1.7838 -16.3924 2.8521 43 1 -0.1515 -15.9586 2.2583 44 1 0.3322 -13.3566 2.3416 45 1 -1.0423 -12.4033 2.9799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169585982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:11 Heat of formation + Delta-G solvation = -8.204986 kcal Electronic energy + Delta-G solvation = -25714.992186 eV Core-core repulsion = 21768.701549 eV Total energy + Delta-G solvation = -3946.290637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.28024 -40.61193 -40.33085 -37.49937 -36.34631 -35.88995 -33.79203 -33.32330 -32.14447 -31.09991 -30.30881 -27.72133 -26.97904 -25.08140 -24.21599 -23.65322 -23.05783 -22.54678 -21.87273 -21.00185 -19.39371 -18.92995 -17.73622 -17.36722 -17.23526 -16.95855 -16.73115 -16.50991 -16.46530 -16.22498 -15.62835 -15.50499 -15.32139 -15.25419 -14.88188 -14.59546 -14.03164 -13.81654 -13.75088 -13.28756 -13.11982 -12.96687 -12.77111 -12.61112 -12.43187 -12.42871 -12.34724 -12.16715 -12.08688 -12.04419 -11.78679 -11.60742 -11.29395 -11.26119 -10.91953 -10.83816 -10.44381 -10.05828 -9.00344 -7.94718 -5.24229 0.13147 0.59609 1.05501 1.48582 1.52120 1.58271 2.09394 2.21753 2.57799 2.90582 3.15267 3.25547 3.38942 3.47329 3.72531 3.74161 3.77569 3.91916 3.95408 4.07585 4.10196 4.19218 4.29285 4.30659 4.38707 4.44534 4.52750 4.66568 4.67409 4.74551 4.75683 4.81227 4.87976 4.90703 5.01223 5.11776 5.27803 5.33412 5.38233 5.42900 5.50078 5.77923 6.27319 6.39200 6.88124 7.09988 7.33718 8.09145 8.32481 9.28634 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034449 B = 0.001580 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.592135 B =17717.917855 C =17884.199907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.077 0.923 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.135 3.865 13 N -0.709 5.709 14 C 0.603 3.397 15 O -0.568 6.568 16 C -0.125 4.125 17 C 0.114 3.886 18 N -0.348 5.348 19 C 0.123 3.877 20 C -0.133 4.133 21 H 0.083 0.917 22 C -0.137 4.137 23 C 0.033 3.967 24 O -0.406 6.406 25 C 0.045 3.955 26 N -0.084 5.084 27 N -0.227 5.227 28 H 0.252 0.748 29 H 0.375 0.625 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.414 0.586 37 H 0.240 0.760 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 -39.589 -0.180 39.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.011 3.989 13 N -0.359 5.359 14 C 0.388 3.612 15 O -0.447 6.447 16 C -0.265 4.265 17 C -0.044 4.044 18 N -0.132 5.132 19 C 0.004 3.996 20 C -0.152 4.152 21 H 0.101 0.899 22 C -0.175 4.175 23 C -0.043 4.043 24 O -0.325 6.325 25 C -0.032 4.032 26 N -0.065 5.065 27 N -0.100 5.100 28 H 0.060 0.940 29 H 0.206 0.794 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.256 0.744 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.070 -39.468 0.043 39.522 hybrid contribution 0.346 1.232 -0.028 1.280 sum -1.724 -38.236 0.015 38.275 Atomic orbital electron populations 1.69815 1.06647 1.26225 1.59302 1.25611 0.96455 1.01239 1.03491 0.85168 0.77182 0.78896 0.78248 1.20294 1.22043 1.20322 1.19648 0.91642 0.85403 1.41631 0.90521 1.42555 1.05711 1.01230 1.89585 1.20677 0.93958 0.84513 0.98223 1.21720 0.98612 0.92543 1.03058 1.21187 0.91362 0.83718 1.02666 1.45812 1.11578 1.05025 1.73482 1.16969 0.86390 0.82066 0.75747 1.90789 1.16180 1.85067 1.52702 1.21421 0.90710 0.94705 1.19671 1.23865 0.94338 0.90903 0.95304 1.50780 1.04568 1.09946 1.47944 1.22673 1.05062 0.70821 1.01065 1.22815 0.99679 0.98892 0.93834 0.89901 1.22941 1.03364 0.91628 0.99602 1.23716 1.01886 0.89287 0.89373 1.89157 1.89941 1.19005 1.34410 1.23546 0.99144 0.90050 0.90417 1.81924 1.10846 0.90411 1.23272 1.74654 1.07594 1.17159 1.10618 0.93956 0.79363 0.95718 0.95648 0.91060 0.91120 0.91111 0.91022 0.74999 0.74422 0.85536 0.83530 0.89749 0.86696 0.88248 0.90299 0.90455 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -38.94 5.60 -343.47 -1.92 -40.86 16 10 C 0.15 6.15 6.26 86.38 0.54 6.69 16 11 C -0.12 -3.80 5.44 30.59 0.17 -3.63 16 12 C 0.13 3.68 5.67 86.38 0.49 4.17 16 13 N -0.71 -18.07 5.55 -466.30 -2.59 -20.66 16 14 C 0.60 15.68 7.82 86.69 0.68 16.36 16 15 O -0.57 -17.22 16.86 -4.01 -0.07 -17.29 16 16 C -0.13 -2.69 6.99 40.81 0.29 -2.40 16 17 C 0.11 1.48 11.27 83.85 0.95 2.43 16 18 N -0.35 -4.00 3.58 -347.09 -1.24 -5.24 16 19 C 0.12 0.26 5.69 86.38 0.49 0.75 16 20 C -0.13 -0.78 3.24 -9.78 -0.03 -0.81 16 21 H 0.08 0.88 8.06 -2.39 -0.02 0.86 16 22 C -0.14 -0.23 6.74 31.61 0.21 -0.02 16 23 C 0.03 0.18 7.63 72.48 0.55 0.73 16 24 O -0.41 -5.83 11.65 -148.98 -1.74 -7.56 16 25 C 0.05 0.48 7.08 72.48 0.51 0.99 16 26 N -0.08 -1.70 13.58 37.02 0.50 -1.20 16 27 N -0.23 -5.39 12.04 -50.00 -0.60 -5.99 16 28 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.37 20.56 7.67 -92.70 -0.71 19.85 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 9.83 8.16 -92.70 -0.76 9.08 16 37 H 0.24 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.15 -0.72 7.90 -2.38 -0.02 -0.74 16 40 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.11 -0.49 7.73 -2.39 -0.02 -0.51 16 42 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.08 0.53 7.74 -2.39 -0.02 0.51 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.41 383.15 0.35 -79.06 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.45 Total: 23.18 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.15 Total: 7.75 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -5.57 Total: -133.90 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.80 Total: -24.85 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -79.41 0.35 -79.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169585982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.855 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds