Wall clock time and date at job start Fri Apr 10 2020 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00183 * 2 1 4 4 H 1.48500 * 109.46850 * 269.99708 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99507 * 3 2 1 6 6 H 1.48497 * 109.47131 * 149.99276 * 3 2 1 7 7 C 1.38812 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00351 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00268 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46912 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.46955 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99735 * 180.02562 * 13 12 11 15 15 O 1.21599 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.47525 * 119.99840 * 179.97438 * 14 13 12 17 17 C 1.36607 * 125.77083 * 180.30411 * 16 14 13 18 18 N 1.34813 * 106.83691 * 180.18218 * 17 16 14 19 19 C 1.46500 * 126.59268 * 179.85402 * 18 17 16 20 20 C 1.53175 * 109.54071 * 274.71082 * 19 18 17 21 21 C 1.53092 * 109.16344 * 176.84833 * 20 19 18 22 22 O 1.42905 * 109.41215 * 302.38824 * 21 20 19 23 23 C 1.42905 * 114.09831 * 61.16158 * 22 21 20 24 24 C 1.53098 * 109.41155 * 298.83847 * 23 22 21 25 25 N 1.40212 * 106.81144 * 359.58551 * 18 17 16 26 26 N 1.28762 * 108.36912 * 0.26712 * 25 18 17 27 27 H 0.97001 * 119.99790 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00233 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46774 * 59.99345 * 10 9 7 30 30 H 1.08997 * 109.46991 * 299.99886 * 10 9 7 31 31 H 1.09002 * 109.47472 * 60.00180 * 11 10 9 32 32 H 1.08997 * 109.47284 * 299.99499 * 11 10 9 33 33 H 1.09002 * 109.46830 * 59.99878 * 12 11 10 34 34 H 1.08997 * 109.47198 * 300.00258 * 12 11 10 35 35 H 0.96997 * 120.00377 * 359.97438 * 13 12 11 36 36 H 1.07998 * 126.57630 * 0.03377 * 17 16 14 37 37 H 1.08996 * 109.54248 * 154.53418 * 19 18 17 38 38 H 1.09004 * 109.52714 * 56.93853 * 20 19 18 39 39 H 1.09001 * 109.57654 * 296.78583 * 20 19 18 40 40 H 1.08997 * 109.48111 * 182.40965 * 21 20 19 41 41 H 1.09000 * 109.48212 * 62.37239 * 21 20 19 42 42 H 1.09000 * 109.47932 * 58.81878 * 23 22 21 43 43 H 1.08993 * 109.48024 * 178.86013 * 23 22 21 44 44 H 1.08996 * 109.52270 * 297.70307 * 24 23 22 45 45 H 1.08995 * 109.57012 * 177.54155 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8287 -6.1448 0.0005 13 7 0.8766 -7.2582 0.0005 14 6 1.3259 -8.5289 0.0005 15 8 2.5214 -8.7512 0.0001 16 6 0.3672 -9.6502 0.0011 17 6 0.6907 -10.9774 0.0071 18 7 -0.4705 -11.6623 0.0012 19 6 -0.6250 -13.1192 0.0013 20 6 -0.5534 -13.6421 -1.4366 21 6 -0.6368 -15.1706 -1.4202 22 8 0.4218 -15.6954 -0.6163 23 6 0.3787 -15.2783 0.7498 24 6 0.5029 -13.7540 0.8206 25 7 -1.5017 -10.7124 0.0013 26 7 -0.9722 -9.5387 0.0012 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6847 -3.7145 0.8905 30 1 2.6846 -3.7146 -0.8894 31 1 0.4366 -4.7622 -0.8886 32 1 0.4374 -4.7618 0.8914 33 1 2.4560 -6.2025 0.8901 34 1 2.4547 -6.2025 -0.8899 35 1 -0.0770 -7.0810 0.0013 36 1 1.6857 -11.3972 0.0127 37 1 -1.5881 -13.3836 0.4380 38 1 0.3886 -13.3335 -1.8900 39 1 -1.3850 -13.2381 -2.0140 40 1 -0.5433 -15.5507 -2.4375 41 1 -1.5961 -15.4780 -1.0039 42 1 -0.5673 -15.5870 1.1945 43 1 1.2037 -15.7359 1.2957 44 1 1.4662 -13.4477 0.4128 45 1 0.4266 -13.4293 1.8582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170409794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:18 Heat of formation + Delta-G solvation = 17.777065 kcal Electronic energy + Delta-G solvation = -25908.749663 eV Core-core repulsion = 21963.585692 eV Total energy + Delta-G solvation = -3945.163971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.64373 -40.12810 -39.35157 -36.02073 -36.00921 -34.32136 -32.25122 -32.09473 -31.88825 -31.13914 -29.43107 -26.36240 -25.42661 -24.55859 -23.66561 -22.86373 -22.33172 -21.15557 -20.81943 -20.45799 -18.58598 -17.24205 -16.93595 -16.85181 -16.40216 -16.14175 -15.96057 -15.61497 -15.46545 -15.19586 -14.69003 -14.59197 -14.48848 -14.05956 -13.93158 -13.28124 -13.23867 -12.96655 -12.67875 -12.45572 -12.35562 -12.27474 -11.95260 -11.79682 -11.58941 -11.21772 -10.92187 -10.89004 -10.77179 -10.71273 -10.57602 -10.49290 -10.22718 -10.00036 -9.67556 -9.63777 -9.01617 -8.84492 -6.89668 -5.73638 -3.02491 0.77199 1.46451 1.51042 3.05547 3.08645 3.16600 3.46562 3.50591 3.51648 3.53385 3.73245 3.86521 4.00323 4.06768 4.31059 4.34008 4.45455 4.57245 4.62128 4.67141 4.71770 4.82605 4.90428 4.94556 5.11470 5.14384 5.18309 5.29823 5.35836 5.48537 5.60913 5.68073 5.94110 6.01038 6.10839 6.23893 6.36832 6.37250 6.45407 6.83605 6.87809 7.38115 7.67583 7.73312 8.10745 8.45260 9.56318 10.14011 10.48692 11.49342 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.045585 B = 0.001595 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.089575 B =17551.755188 C =17868.148587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.139 4.139 12 C 0.123 3.877 13 N -0.710 5.710 14 C 0.602 3.398 15 O -0.542 6.542 16 C -0.098 4.098 17 C 0.094 3.906 18 N -0.358 5.358 19 C 0.151 3.849 20 C -0.169 4.169 21 C 0.066 3.934 22 O -0.378 6.378 23 C 0.067 3.933 24 C -0.172 4.172 25 N -0.064 5.064 26 N -0.202 5.202 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.202 0.798 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -37.166 0.111 37.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.177 4.177 12 C 0.000 4.000 13 N -0.360 5.360 14 C 0.385 3.615 15 O -0.419 6.419 16 C -0.237 4.237 17 C -0.063 4.063 18 N -0.142 5.142 19 C 0.049 3.951 20 C -0.208 4.208 21 C -0.012 4.012 22 O -0.296 6.296 23 C -0.011 4.011 24 C -0.211 4.211 25 N -0.044 5.044 26 N -0.075 5.075 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.219 0.781 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.775 -37.091 0.047 37.195 hybrid contribution 0.419 1.049 0.100 1.134 sum -2.357 -36.042 0.147 36.119 Atomic orbital electron populations 1.69664 1.05124 1.25639 1.57833 1.24753 0.95549 0.97734 1.03043 0.86165 0.78639 0.83742 0.77510 1.21718 1.21777 1.20737 1.19253 0.91109 0.84146 1.42622 0.91085 1.42341 1.05899 0.99970 1.89586 1.20519 0.93246 0.85180 0.98202 1.21957 0.99610 0.93152 1.02984 1.21429 0.91590 0.84352 1.02675 1.45875 1.11520 1.05098 1.73510 1.16736 0.86352 0.81752 0.76653 1.90814 1.15085 1.84663 1.51288 1.21535 0.91059 0.93977 1.17115 1.23279 0.93371 0.91897 0.97727 1.50660 1.05461 1.08422 1.49699 1.21655 1.02204 0.73082 0.98145 1.22718 1.05151 0.97886 0.95052 1.22598 0.90773 0.90868 0.96941 1.88017 1.50039 1.71171 1.20372 1.22574 1.03188 0.91639 0.83664 1.22731 0.98849 0.97852 1.01646 1.82021 1.09614 0.90162 1.22557 1.74658 1.07062 1.16039 1.09767 0.93529 0.78261 0.96029 0.96025 0.91146 0.91139 0.91039 0.91043 0.75549 0.78096 0.86615 0.89700 0.89193 0.87572 0.92243 0.92240 0.87430 0.89298 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.02 5.60 -59.91 -0.34 -19.35 16 10 C 0.16 3.18 6.26 -4.04 -0.03 3.16 16 11 C -0.14 -2.22 5.44 -26.73 -0.15 -2.36 16 12 C 0.12 1.74 5.67 -4.04 -0.02 1.71 16 13 N -0.71 -9.36 5.55 -61.35 -0.34 -9.70 16 14 C 0.60 8.26 7.82 -12.47 -0.10 8.16 16 15 O -0.54 -8.67 16.86 5.28 0.09 -8.58 16 16 C -0.10 -1.15 6.99 -83.55 -0.58 -1.74 16 17 C 0.09 0.82 10.39 -16.83 -0.17 0.65 16 18 N -0.36 -2.84 3.55 -54.38 -0.19 -3.04 16 19 C 0.15 0.67 3.32 -67.75 -0.23 0.44 16 20 C -0.17 -0.65 5.74 -26.59 -0.15 -0.80 16 21 C 0.07 0.19 6.84 37.20 0.25 0.45 16 22 O -0.38 -1.80 10.77 -35.23 -0.38 -2.18 16 23 C 0.07 0.17 6.84 37.21 0.25 0.43 16 24 C -0.17 -0.52 5.13 -26.59 -0.14 -0.65 16 25 N -0.06 -0.72 13.78 60.35 0.83 0.11 16 26 N -0.20 -2.53 12.04 32.85 0.40 -2.13 16 27 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 28 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.41 4.96 8.16 -40.82 -0.33 4.63 16 36 H 0.20 1.24 7.25 -52.49 -0.38 0.86 16 37 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 42 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 43 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.09 0.28 7.07 -51.93 -0.37 -0.09 16 45 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -35.52 378.33 -6.69 -42.21 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.86 Total: 5.32 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.30 Total: 1.88 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 1.08 Total: -62.07 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.29 Total: -10.76 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.52 -6.69 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170409794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.991 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds