Wall clock time and date at job start Fri Apr 10 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00183 * 2 1 4 4 H 1.48500 * 109.46850 * 269.99708 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99507 * 3 2 1 6 6 H 1.48497 * 109.47131 * 149.99276 * 3 2 1 7 7 C 1.38812 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00351 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00268 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46912 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.46955 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99735 * 180.02562 * 13 12 11 15 15 O 1.21599 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.47525 * 119.99840 * 179.97438 * 14 13 12 17 17 C 1.36607 * 125.77083 * 180.30411 * 16 14 13 18 18 N 1.34813 * 106.83691 * 180.18218 * 17 16 14 19 19 C 1.46500 * 126.59268 * 179.85402 * 18 17 16 20 20 C 1.53175 * 109.54071 * 274.71082 * 19 18 17 21 21 C 1.53092 * 109.16344 * 176.84833 * 20 19 18 22 22 O 1.42905 * 109.41215 * 302.38824 * 21 20 19 23 23 C 1.42905 * 114.09831 * 61.16158 * 22 21 20 24 24 C 1.53098 * 109.41155 * 298.83847 * 23 22 21 25 25 N 1.40212 * 106.81144 * 359.58551 * 18 17 16 26 26 N 1.28762 * 108.36912 * 0.26712 * 25 18 17 27 27 H 0.97001 * 119.99790 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00233 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46774 * 59.99345 * 10 9 7 30 30 H 1.08997 * 109.46991 * 299.99886 * 10 9 7 31 31 H 1.09002 * 109.47472 * 60.00180 * 11 10 9 32 32 H 1.08997 * 109.47284 * 299.99499 * 11 10 9 33 33 H 1.09002 * 109.46830 * 59.99878 * 12 11 10 34 34 H 1.08997 * 109.47198 * 300.00258 * 12 11 10 35 35 H 0.96997 * 120.00377 * 359.97438 * 13 12 11 36 36 H 1.07998 * 126.57630 * 0.03377 * 17 16 14 37 37 H 1.08996 * 109.54248 * 154.53418 * 19 18 17 38 38 H 1.09004 * 109.52714 * 56.93853 * 20 19 18 39 39 H 1.09001 * 109.57654 * 296.78583 * 20 19 18 40 40 H 1.08997 * 109.48111 * 182.40965 * 21 20 19 41 41 H 1.09000 * 109.48212 * 62.37239 * 21 20 19 42 42 H 1.09000 * 109.47932 * 58.81878 * 23 22 21 43 43 H 1.08993 * 109.48024 * 178.86013 * 23 22 21 44 44 H 1.08996 * 109.52270 * 297.70307 * 24 23 22 45 45 H 1.08995 * 109.57012 * 177.54155 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8287 -6.1448 0.0005 13 7 0.8766 -7.2582 0.0005 14 6 1.3259 -8.5289 0.0005 15 8 2.5214 -8.7512 0.0001 16 6 0.3672 -9.6502 0.0011 17 6 0.6907 -10.9774 0.0071 18 7 -0.4705 -11.6623 0.0012 19 6 -0.6250 -13.1192 0.0013 20 6 -0.5534 -13.6421 -1.4366 21 6 -0.6368 -15.1706 -1.4202 22 8 0.4218 -15.6954 -0.6163 23 6 0.3787 -15.2783 0.7498 24 6 0.5029 -13.7540 0.8206 25 7 -1.5017 -10.7124 0.0013 26 7 -0.9722 -9.5387 0.0012 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6847 -3.7145 0.8905 30 1 2.6846 -3.7146 -0.8894 31 1 0.4366 -4.7622 -0.8886 32 1 0.4374 -4.7618 0.8914 33 1 2.4560 -6.2025 0.8901 34 1 2.4547 -6.2025 -0.8899 35 1 -0.0770 -7.0810 0.0013 36 1 1.6857 -11.3972 0.0127 37 1 -1.5881 -13.3836 0.4380 38 1 0.3886 -13.3335 -1.8900 39 1 -1.3850 -13.2381 -2.0140 40 1 -0.5433 -15.5507 -2.4375 41 1 -1.5961 -15.4780 -1.0039 42 1 -0.5673 -15.5870 1.1945 43 1 1.2037 -15.7359 1.2957 44 1 1.4662 -13.4477 0.4128 45 1 0.4266 -13.4293 1.8582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170409794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:17 Heat of formation + Delta-G solvation = -9.565144 kcal Electronic energy + Delta-G solvation = -25909.935310 eV Core-core repulsion = 21963.585692 eV Total energy + Delta-G solvation = -3946.349618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.40487 -40.64258 -40.23154 -37.51189 -36.52558 -35.91465 -33.79046 -32.71545 -32.32442 -32.11435 -31.01769 -27.35005 -26.49524 -25.20397 -24.68619 -23.75563 -23.45080 -22.56415 -21.48528 -21.21871 -19.50442 -18.97774 -17.67515 -17.37395 -17.26707 -16.99094 -16.74473 -16.56374 -16.40145 -15.90741 -15.78896 -15.51749 -15.29505 -15.25977 -14.91819 -14.84555 -14.59081 -13.83877 -13.50232 -13.42600 -13.29740 -12.81409 -12.78735 -12.66233 -12.57893 -12.43598 -12.42368 -12.27456 -12.07221 -12.04685 -11.79206 -11.51351 -11.30329 -11.28561 -10.93425 -10.74914 -10.50017 -10.09328 -9.00758 -7.95325 -5.24729 0.04672 0.53568 0.91084 1.48398 1.50504 1.59069 2.04541 2.16530 2.57204 2.87758 3.06754 3.13078 3.38539 3.42392 3.59673 3.74059 3.76186 3.79224 3.84162 4.07713 4.09450 4.14586 4.20981 4.29785 4.41065 4.47185 4.53492 4.58657 4.66219 4.73779 4.74793 4.76572 4.87991 4.88852 4.95082 5.03909 5.26214 5.32830 5.35232 5.36572 5.50001 6.17287 6.26892 6.35803 6.81927 7.05936 7.33327 8.08597 8.32015 9.28262 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.045585 B = 0.001595 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.089575 B =17551.755188 C =17868.148587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.134 3.866 13 N -0.707 5.707 14 C 0.604 3.396 15 O -0.568 6.568 16 C -0.120 4.120 17 C 0.111 3.889 18 N -0.342 5.342 19 C 0.143 3.857 20 C -0.164 4.164 21 C 0.067 3.933 22 O -0.398 6.398 23 C 0.065 3.935 24 C -0.167 4.167 25 N -0.083 5.083 26 N -0.223 5.223 27 H 0.252 0.748 28 H 0.375 0.625 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.228 0.772 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -38.895 0.339 38.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.010 3.990 13 N -0.357 5.357 14 C 0.389 3.611 15 O -0.447 6.447 16 C -0.260 4.260 17 C -0.047 4.047 18 N -0.127 5.127 19 C 0.043 3.957 20 C -0.203 4.203 21 C -0.010 4.010 22 O -0.317 6.317 23 C -0.012 4.012 24 C -0.205 4.205 25 N -0.063 5.063 26 N -0.096 5.096 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.251 0.749 36 H 0.245 0.755 37 H 0.145 0.855 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.107 0.893 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.109 -38.870 0.275 38.928 hybrid contribution 0.222 1.427 0.025 1.444 sum -1.887 -37.444 0.300 37.492 Atomic orbital electron populations 1.69821 1.06643 1.26150 1.59385 1.25611 0.96464 1.01236 1.03538 0.85097 0.77691 0.79224 0.77481 1.21311 1.22076 1.19378 1.19681 0.91649 0.85388 1.41464 0.90508 1.42562 1.05723 1.01230 1.89563 1.20679 0.93954 0.84504 0.98242 1.21721 0.98615 0.92474 1.03109 1.21206 0.91356 0.83690 1.02714 1.45797 1.11632 1.04918 1.73383 1.16925 0.86317 0.82065 0.75842 1.90792 1.16161 1.85057 1.52658 1.21409 0.90770 0.94482 1.19359 1.23635 0.94488 0.90959 0.95649 1.50913 1.04564 1.09353 1.47837 1.22061 1.03598 0.70976 0.99082 1.22676 1.04566 0.98656 0.94362 1.22675 0.91097 0.89877 0.97395 1.87994 1.50787 1.71511 1.21428 1.22711 1.04425 0.91076 0.82958 1.22731 0.98049 0.98139 1.01620 1.81940 1.10653 0.90401 1.23296 1.74630 1.07462 1.16959 1.10564 0.93955 0.79348 0.95662 0.95675 0.91058 0.91016 0.91001 0.91057 0.74934 0.75529 0.85465 0.90494 0.89538 0.86911 0.90823 0.90900 0.86415 0.89324 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.06 21.65 0.28 -59.88 16 2 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.75 -38.87 5.60 -343.45 -1.92 -40.79 16 10 C 0.15 6.14 6.26 86.38 0.54 6.68 16 11 C -0.12 -3.79 5.44 30.60 0.17 -3.62 16 12 C 0.13 3.68 5.67 86.38 0.49 4.18 16 13 N -0.71 -18.27 5.55 -466.27 -2.59 -20.86 16 14 C 0.60 16.25 7.82 86.69 0.68 16.93 16 15 O -0.57 -17.79 16.86 -4.03 -0.07 -17.86 16 16 C -0.12 -2.77 6.99 40.82 0.29 -2.48 16 17 C 0.11 1.79 10.39 83.85 0.87 2.66 16 18 N -0.34 -4.96 3.55 -325.97 -1.16 -6.12 16 19 C 0.14 1.00 3.32 45.11 0.15 1.15 16 20 C -0.16 -1.00 5.74 30.68 0.18 -0.83 16 21 C 0.07 0.27 6.84 72.01 0.49 0.76 16 22 O -0.40 -3.02 10.77 -148.98 -1.60 -4.63 16 23 C 0.07 0.18 6.84 72.01 0.49 0.68 16 24 C -0.17 -0.63 5.13 30.69 0.16 -0.47 16 25 N -0.08 -1.81 13.78 37.02 0.51 -1.30 16 26 N -0.22 -5.52 12.04 -49.99 -0.60 -6.12 16 27 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.37 20.52 7.67 -92.70 -0.71 19.81 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.41 9.91 8.16 -92.71 -0.76 9.15 16 36 H 0.23 2.32 7.25 -2.91 -0.02 2.30 16 37 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 0.29 8.14 -2.39 -0.02 0.28 16 41 H 0.07 0.09 8.14 -2.39 -0.02 0.08 16 42 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.09 0.36 7.07 -2.39 -0.02 0.35 16 45 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -75.50 378.33 0.23 -75.27 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.45 Total: 25.36 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.81 Total: 8.18 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.48 Total: -135.08 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.67 Total: -22.49 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -75.50 0.23 -75.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170409794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.703 kcal (2) G-P(sol) polarization free energy of solvation -75.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds