Wall clock time and date at job start Fri Apr 10 2020 18:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34122 * 125.98844 * 2 1 4 4 C 1.30505 * 109.25388 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69945 * 359.76664 * 4 3 2 6 6 H 0.97000 * 126.39827 * 180.26552 * 5 4 3 7 7 C 1.34665 * 125.98630 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.59360 * 359.95919 * 7 2 1 9 9 C 1.50701 * 109.47064 * 85.00152 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47452 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47342 * 179.97438 * 14 13 12 16 16 C 1.46894 * 110.99937 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46893 * 179.97438 * 16 15 14 18 18 O 1.21289 * 120.00237 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99895 * 179.97438 * 17 16 15 20 20 C 1.37089 * 120.00031 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00230 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00171 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99806 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99798 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47323 * 89.99418 * 24 22 20 26 26 H 1.48498 * 109.47173 * 210.00140 * 24 22 20 27 27 H 1.48505 * 109.47106 * 329.99502 * 24 22 20 28 28 H 1.08997 * 109.47196 * 269.99651 * 1 2 3 29 29 H 1.09003 * 109.47027 * 29.99485 * 1 2 3 30 30 H 1.09000 * 109.47184 * 149.99442 * 1 2 3 31 31 H 1.07999 * 125.64760 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47152 * 325.00244 * 8 7 2 33 33 H 1.09001 * 109.46980 * 205.00345 * 8 7 2 34 34 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 36 36 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 37 37 H 1.09001 * 109.47289 * 299.99909 * 13 12 11 38 38 H 1.09002 * 109.47153 * 59.99993 * 13 12 11 39 39 H 1.08998 * 109.47061 * 300.00668 * 14 13 12 40 40 H 1.09002 * 109.46668 * 60.00355 * 14 13 12 41 41 H 1.00899 * 110.99915 * 56.04913 * 15 14 13 42 42 H 1.08993 * 109.47574 * 300.00148 * 16 15 14 43 43 H 1.09005 * 109.46819 * 60.00639 * 16 15 14 44 44 H 0.97005 * 119.99795 * 0.02562 * 19 17 16 45 45 H 0.97003 * 119.99410 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5913 -0.6402 0.0043 6 1 4.3913 -1.1887 0.0087 7 6 2.2983 -1.0896 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 6 1.5779 -2.9697 -1.4156 10 8 1.7371 -2.1938 -2.3339 11 7 1.1610 -4.2278 -1.6607 12 6 0.8998 -4.6578 -3.0366 13 6 0.4416 -6.1175 -3.0364 14 6 0.1681 -6.5665 -4.4733 15 7 -0.2712 -7.9683 -4.4731 16 6 -0.5442 -8.4345 -5.8391 17 6 -0.9907 -9.8733 -5.7989 18 8 -1.0738 -10.4531 -4.7368 19 7 -1.2987 -10.5156 -6.9431 20 6 -1.7044 -11.8245 -6.9066 21 1 -1.7776 -12.3411 -5.9610 22 6 -2.0224 -12.4865 -8.0863 23 7 -2.4118 -13.7411 -8.0512 24 14 -1.8965 -11.5930 -9.7218 25 1 -0.5323 -11.7725 -10.2803 26 1 -2.8962 -12.1497 -10.6683 27 1 -2.1610 -10.1461 -9.5171 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 4.4004 1.3687 -0.0003 32 1 0.9355 -2.6222 0.5897 33 1 2.6273 -3.1530 0.4336 34 1 1.0341 -4.8484 -0.9262 35 1 0.1196 -4.0325 -3.4708 36 1 1.8116 -4.5629 -3.6262 37 1 1.2215 -6.7431 -2.6021 38 1 -0.4703 -6.2121 -2.4468 39 1 -0.6119 -5.9409 -4.9072 40 1 1.0798 -6.4720 -5.0632 41 1 -1.0779 -8.0943 -3.8804 42 1 -1.3296 -7.8222 -6.2819 43 1 0.3623 -8.3524 -6.4389 44 1 -1.2326 -10.0517 -7.7925 45 1 -2.6334 -14.2033 -8.8747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174684077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:20 Heat of formation + Delta-G solvation = -20.475636 kcal Electronic energy + Delta-G solvation = -25304.277592 eV Core-core repulsion = 21357.454859 eV Total energy + Delta-G solvation = -3946.822733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48829 -39.93366 -38.53744 -36.70277 -34.99092 -33.92874 -33.46630 -33.22531 -31.75514 -31.43721 -29.33381 -27.37950 -26.19111 -24.69810 -23.14903 -22.09554 -21.84078 -20.99865 -19.91400 -19.39500 -18.38362 -18.19211 -17.47772 -16.58418 -16.31798 -15.92360 -15.73986 -15.37465 -15.13989 -14.88992 -14.45303 -14.30978 -14.03677 -13.71429 -13.57054 -13.32971 -13.16031 -13.09406 -13.00812 -12.61189 -12.44365 -12.37758 -12.16036 -11.96075 -11.75080 -11.58124 -11.21779 -11.06394 -10.61288 -10.38391 -10.30373 -10.13560 -9.99658 -9.59621 -9.45715 -8.63652 -8.58101 -8.23336 -8.18410 -6.33308 -3.84823 1.57557 2.23139 2.61658 2.76713 2.95374 3.00972 3.05577 3.13786 3.71213 4.02575 4.08838 4.09668 4.30200 4.44442 4.48221 4.69579 4.75099 4.85527 4.91466 4.94078 4.96894 5.00675 5.19759 5.30235 5.39978 5.41711 5.51016 5.58212 5.59660 5.69629 5.77217 5.79359 5.84927 5.89297 5.94379 6.05579 6.40550 6.98250 7.02347 7.08557 7.50952 7.56001 7.72603 7.82573 8.12050 8.57398 8.92589 9.40112 9.80044 10.79762 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.040552 B = 0.001442 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.305868 B =19412.358632 C =19601.485094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.022 3.978 3 N -0.492 5.492 4 C 0.190 3.810 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.011 4.011 8 C -0.065 4.065 9 C 0.509 3.491 10 O -0.527 6.527 11 N -0.730 5.730 12 C 0.121 3.879 13 C -0.129 4.129 14 C 0.062 3.938 15 N -0.669 5.669 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.566 6.566 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.270 1.270 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.208 0.792 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.671 26.340 15.613 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 N -0.212 5.212 4 C -0.093 4.093 5 N -0.166 5.166 6 H 0.256 0.744 7 C -0.126 4.126 8 C -0.106 4.106 9 C 0.294 3.706 10 O -0.402 6.402 11 N -0.382 5.382 12 C -0.003 4.003 13 C -0.167 4.167 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.448 6.448 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.225 0.775 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.170 0.830 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.965 26.888 15.540 32.935 hybrid contribution 0.018 -0.422 -1.383 1.446 sum 10.983 26.467 14.157 31.961 Atomic orbital electron populations 1.20046 0.87794 1.02907 1.01921 1.20450 0.96410 0.87802 1.06064 1.70185 1.00601 1.30648 1.19781 1.24900 0.97375 0.81820 1.05242 1.43127 1.07900 1.08757 1.56833 0.74430 1.20121 0.84195 0.95292 1.13026 1.20023 1.04178 0.91036 0.95358 1.20525 0.77158 0.81774 0.91119 1.90766 1.50671 1.52663 1.46112 1.46000 1.69213 1.13108 1.09908 1.21326 1.01318 0.95091 0.82564 1.21743 1.02702 0.94189 0.98104 1.21832 1.00334 0.88810 0.95824 1.60051 1.42268 1.17815 1.10046 1.21706 1.00602 0.95236 0.90960 1.19704 0.84087 0.87939 0.84774 1.90560 1.56640 1.68028 1.29532 1.42207 1.61185 1.12807 1.06741 1.19436 1.41567 0.85283 0.97222 0.86276 1.25040 0.97332 0.95688 0.98049 1.69623 1.44384 1.09548 1.28511 0.86666 0.78977 0.79562 0.84144 1.19584 1.20162 1.19525 0.91363 0.90982 0.91614 0.77509 0.86432 0.88052 0.76322 0.91378 0.91324 0.90072 0.91108 0.95166 0.90792 0.82998 0.93670 0.89426 0.79661 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.13 36.01 0.36 -0.20 16 2 C 0.02 0.23 7.09 -82.85 -0.59 -0.36 16 3 N -0.49 -5.47 11.25 -10.87 -0.12 -5.59 16 4 C 0.19 1.44 13.04 -90.37 -1.18 0.26 16 5 N -0.56 -3.60 6.15 -10.30 -0.06 -3.66 16 6 H 0.42 1.29 8.96 -40.82 -0.37 0.93 16 7 C -0.01 -0.09 5.73 -81.60 -0.47 -0.56 16 8 C -0.06 -0.33 5.81 -29.03 -0.17 -0.50 16 9 C 0.51 4.21 7.82 -10.98 -0.09 4.12 16 10 O -0.53 -6.88 16.03 5.56 0.09 -6.79 16 11 N -0.73 -4.67 5.56 -60.30 -0.33 -5.01 16 12 C 0.12 0.95 5.67 -4.04 -0.02 0.93 16 13 C -0.13 -1.03 5.59 -26.73 -0.15 -1.18 16 14 C 0.06 0.64 5.69 -3.82 -0.02 0.62 16 15 N -0.67 -9.71 6.13 -115.06 -0.70 -10.41 16 16 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 17 C 0.45 10.05 7.82 -10.98 -0.09 9.97 16 18 O -0.57 -14.99 15.78 5.55 0.09 -14.90 16 19 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 20 C -0.31 -8.62 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 24 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 31 H 0.21 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.12 0.37 8.03 -51.93 -0.42 -0.05 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.40 1.46 8.47 -40.82 -0.35 1.12 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.35 5.22 8.43 -39.29 -0.33 4.89 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -38.99 385.51 -8.65 -47.64 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.73 Total: 11.09 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -2.68 Total: 6.11 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.51 Total: -63.46 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.18 Total: -21.70 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.99 -8.65 -47.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174684077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.168 kcal (2) G-P(sol) polarization free energy of solvation -38.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds