Wall clock time and date at job start Fri Apr 10 2020 18:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34122 * 125.98844 * 2 1 4 4 C 1.30505 * 109.25388 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69945 * 359.76664 * 4 3 2 6 6 H 0.97000 * 126.39827 * 180.26552 * 5 4 3 7 7 C 1.34665 * 125.98630 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.59360 * 359.95919 * 7 2 1 9 9 C 1.50701 * 109.47064 * 85.00152 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47452 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47342 * 179.97438 * 14 13 12 16 16 C 1.46894 * 110.99937 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46893 * 179.97438 * 16 15 14 18 18 O 1.21289 * 120.00237 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99895 * 179.97438 * 17 16 15 20 20 C 1.37089 * 120.00031 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00230 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00171 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99806 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99798 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47323 * 89.99418 * 24 22 20 26 26 H 1.48498 * 109.47173 * 210.00140 * 24 22 20 27 27 H 1.48505 * 109.47106 * 329.99502 * 24 22 20 28 28 H 1.08997 * 109.47196 * 269.99651 * 1 2 3 29 29 H 1.09003 * 109.47027 * 29.99485 * 1 2 3 30 30 H 1.09000 * 109.47184 * 149.99442 * 1 2 3 31 31 H 1.07999 * 125.64760 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47152 * 325.00244 * 8 7 2 33 33 H 1.09001 * 109.46980 * 205.00345 * 8 7 2 34 34 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 36 36 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 37 37 H 1.09001 * 109.47289 * 299.99909 * 13 12 11 38 38 H 1.09002 * 109.47153 * 59.99993 * 13 12 11 39 39 H 1.08998 * 109.47061 * 300.00668 * 14 13 12 40 40 H 1.09002 * 109.46668 * 60.00355 * 14 13 12 41 41 H 1.00899 * 110.99915 * 56.04913 * 15 14 13 42 42 H 1.08993 * 109.47574 * 300.00148 * 16 15 14 43 43 H 1.09005 * 109.46819 * 60.00639 * 16 15 14 44 44 H 0.97005 * 119.99795 * 0.02562 * 19 17 16 45 45 H 0.97003 * 119.99410 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5913 -0.6402 0.0043 6 1 4.3913 -1.1887 0.0087 7 6 2.2983 -1.0896 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 6 1.5779 -2.9697 -1.4156 10 8 1.7371 -2.1938 -2.3339 11 7 1.1610 -4.2278 -1.6607 12 6 0.8998 -4.6578 -3.0366 13 6 0.4416 -6.1175 -3.0364 14 6 0.1681 -6.5665 -4.4733 15 7 -0.2712 -7.9683 -4.4731 16 6 -0.5442 -8.4345 -5.8391 17 6 -0.9907 -9.8733 -5.7989 18 8 -1.0738 -10.4531 -4.7368 19 7 -1.2987 -10.5156 -6.9431 20 6 -1.7044 -11.8245 -6.9066 21 1 -1.7776 -12.3411 -5.9610 22 6 -2.0224 -12.4865 -8.0863 23 7 -2.4118 -13.7411 -8.0512 24 14 -1.8965 -11.5930 -9.7218 25 1 -0.5323 -11.7725 -10.2803 26 1 -2.8962 -12.1497 -10.6683 27 1 -2.1610 -10.1461 -9.5171 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 4.4004 1.3687 -0.0003 32 1 0.9355 -2.6222 0.5897 33 1 2.6273 -3.1530 0.4336 34 1 1.0341 -4.8484 -0.9262 35 1 0.1196 -4.0325 -3.4708 36 1 1.8116 -4.5629 -3.6262 37 1 1.2215 -6.7431 -2.6021 38 1 -0.4703 -6.2121 -2.4468 39 1 -0.6119 -5.9409 -4.9072 40 1 1.0798 -6.4720 -5.0632 41 1 -1.0779 -8.0943 -3.8804 42 1 -1.3296 -7.8222 -6.2819 43 1 0.3623 -8.3524 -6.4389 44 1 -1.2326 -10.0517 -7.7925 45 1 -2.6334 -14.2033 -8.8747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174684077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:19 Heat of formation + Delta-G solvation = -53.444549 kcal Electronic energy + Delta-G solvation = -25305.707231 eV Core-core repulsion = 21357.454859 eV Total energy + Delta-G solvation = -3948.252372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.03944 -40.59611 -40.29200 -37.65447 -36.13220 -35.64237 -34.03578 -33.81919 -33.73584 -32.34166 -29.96880 -28.61863 -26.97699 -26.06227 -24.32532 -22.68324 -22.55493 -21.64492 -21.27246 -20.50087 -20.23360 -18.73381 -18.09781 -17.79159 -17.29564 -16.85226 -16.82386 -16.57887 -15.99633 -15.86316 -15.69677 -15.27233 -15.11300 -14.89935 -14.44934 -14.40736 -14.25550 -14.14513 -13.74075 -13.64664 -13.47790 -13.29602 -13.06894 -12.98791 -12.85525 -12.66191 -12.42052 -12.39569 -11.97803 -11.82419 -11.51407 -11.07451 -10.93078 -10.75365 -10.44364 -10.24926 -10.08702 -9.33370 -9.15618 -8.41480 -6.02396 1.02437 1.30631 1.35910 1.44723 1.63687 1.95393 2.07134 2.22955 2.23507 2.40939 2.77329 3.15005 3.42798 3.62539 3.82096 3.99762 4.01953 4.09562 4.14593 4.19718 4.27781 4.40504 4.44493 4.46572 4.56355 4.58439 4.58965 4.73264 4.80367 4.84930 4.99732 5.08806 5.18402 5.23159 5.25635 5.46236 5.52559 5.82785 5.90369 6.04387 6.40007 6.54791 6.59597 6.61493 6.87858 7.15731 7.27482 7.39674 7.95953 8.76081 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.040552 B = 0.001442 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.305868 B =19412.358632 C =19601.485094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.017 4.017 3 N -0.541 5.541 4 C 0.189 3.811 5 N -0.555 5.555 6 H 0.434 0.566 7 C -0.014 4.014 8 C -0.058 4.058 9 C 0.510 3.490 10 O -0.580 6.580 11 N -0.717 5.717 12 C 0.128 3.872 13 C -0.116 4.116 14 C 0.062 3.938 15 N -0.687 5.687 16 C 0.061 3.939 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.331 4.331 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.231 1.231 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.242 0.758 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.418 0.582 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.346 0.654 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.839 28.286 14.836 34.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 N -0.262 5.262 4 C -0.095 4.095 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.130 4.130 8 C -0.099 4.099 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.370 5.370 12 C 0.003 3.997 13 C -0.154 4.154 14 C -0.067 4.067 15 N -0.319 5.319 16 C -0.071 4.071 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.460 4.460 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.574 5.574 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.155 1.155 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.258 0.742 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.256 0.744 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.164 0.836 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.153 28.825 14.801 34.607 hybrid contribution -0.314 -1.069 -1.002 1.498 sum 11.839 27.756 13.799 33.181 Atomic orbital electron populations 1.20038 0.87344 1.02311 1.02655 1.20858 0.97338 0.88581 1.07724 1.70131 1.02290 1.32010 1.21759 1.25574 0.97431 0.82737 1.03729 1.43145 1.08165 1.08671 1.55918 0.72577 1.20489 0.84499 0.96197 1.11830 1.20135 1.06394 0.89730 0.93614 1.21018 0.76053 0.81502 0.91778 1.90751 1.53166 1.54134 1.47923 1.45887 1.68173 1.12993 1.09943 1.21149 1.00566 0.94720 0.83245 1.21595 1.02993 0.93936 0.96902 1.21917 1.00760 0.86563 0.97443 1.60059 1.42182 1.20569 1.09133 1.21632 1.02469 0.90411 0.92626 1.21010 0.81644 0.90292 0.83490 1.90537 1.57982 1.69953 1.31395 1.42043 1.61713 1.11299 1.08225 1.19024 1.43881 0.87597 0.95477 0.92600 1.26104 0.95830 0.96430 1.02880 1.69804 1.45425 1.11898 1.30305 0.85369 0.79431 0.79948 0.76800 1.18208 1.20057 1.15451 0.89936 0.92473 0.91234 0.74234 0.84043 0.84670 0.74437 0.92249 0.92248 0.90208 0.90347 0.93940 0.90204 0.83557 0.90576 0.86874 0.77463 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.13 71.24 0.72 -0.36 16 2 C -0.02 -0.33 7.09 41.39 0.29 -0.04 16 3 N -0.54 -12.06 11.25 -188.31 -2.12 -14.18 16 4 C 0.19 2.67 13.04 180.26 2.35 5.02 16 5 N -0.55 -6.19 6.15 -186.49 -1.15 -7.33 16 6 H 0.43 1.72 8.96 -92.71 -0.83 0.89 16 7 C -0.01 -0.20 5.73 40.95 0.23 0.03 16 8 C -0.06 -0.44 5.81 29.10 0.17 -0.28 16 9 C 0.51 7.47 7.82 87.66 0.69 8.16 16 10 O -0.58 -14.80 16.03 -3.03 -0.05 -14.85 16 11 N -0.72 -7.48 5.56 -463.06 -2.57 -10.05 16 12 C 0.13 1.76 5.67 86.38 0.49 2.25 16 13 C -0.12 -1.57 5.59 30.60 0.17 -1.40 16 14 C 0.06 1.11 5.69 86.31 0.49 1.60 16 15 N -0.69 -18.38 6.13 -517.94 -3.17 -21.55 16 16 C 0.06 1.77 6.17 85.56 0.53 2.30 16 17 C 0.45 19.78 7.82 87.66 0.69 20.46 16 18 O -0.61 -33.42 15.78 -3.06 -0.05 -33.47 16 19 N -0.59 -27.50 5.09 -306.98 -1.56 -29.06 16 20 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 21 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.93 -55.96 13.96 21.66 0.30 -55.65 16 24 Si 0.96 38.38 27.74 68.60 1.90 40.28 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 26 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.02 7.89 -2.39 -0.02 1.00 16 31 H 0.24 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.14 0.43 8.03 -2.39 -0.02 0.41 16 33 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.42 1.74 8.47 -92.71 -0.79 0.96 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.35 9.79 8.43 -89.69 -0.76 9.03 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 44 H 0.39 14.94 5.76 -92.70 -0.53 14.40 16 45 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -91.96 385.51 -2.24 -94.19 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -1.91 Total: 32.59 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 8.14 Total: 19.08 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -10.27 Total: -137.83 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.10 Total: -48.32 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -91.96 -2.24 -94.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174684077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.749 kcal (2) G-P(sol) polarization free energy of solvation -91.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds