Wall clock time and date at job start Fri Apr 10 2020 18:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30493 * 125.65484 * 2 1 4 4 C 1.34132 * 109.26007 * 180.29184 * 3 2 1 5 5 C 1.34675 * 108.01601 * 359.73026 * 4 3 2 6 6 N 1.35053 * 125.64597 * 179.82933 * 2 1 3 7 7 C 1.46499 * 126.39601 * 359.97164 * 6 2 1 8 8 C 1.50701 * 109.46992 * 84.71660 * 7 6 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47452 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47342 * 179.97438 * 13 12 11 15 15 C 1.46894 * 110.99937 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46893 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00237 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99895 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00031 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00230 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00171 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99842 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00047 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47129 * 60.00435 * 23 21 19 25 25 H 1.48499 * 109.46582 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46949 * 300.00266 * 23 21 19 27 27 H 1.09000 * 109.47221 * 270.17745 * 1 2 3 28 28 H 1.09007 * 109.46854 * 30.17396 * 1 2 3 29 29 H 1.09001 * 109.47535 * 150.17412 * 1 2 3 30 30 H 1.08002 * 125.99344 * 179.72408 * 4 3 2 31 31 H 1.08004 * 126.58696 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47391 * 324.71651 * 7 6 2 33 33 H 1.09001 * 109.46813 * 204.71707 * 7 6 2 34 34 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47487 * 300.00114 * 11 10 8 36 36 H 1.09002 * 109.47182 * 60.00342 * 11 10 8 37 37 H 1.09001 * 109.47289 * 299.99909 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99993 * 12 11 10 39 39 H 1.08998 * 109.47061 * 300.00668 * 13 12 11 40 40 H 1.09002 * 109.46668 * 60.00355 * 13 12 11 41 41 H 1.00899 * 110.99915 * 56.04913 * 14 13 12 42 42 H 1.08993 * 109.47574 * 300.00148 * 15 14 13 43 43 H 1.09005 * 109.46819 * 60.00639 * 15 14 13 44 44 H 0.97005 * 119.99795 * 0.02562 * 18 16 15 45 45 H 0.96990 * 120.00032 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0603 0.0000 4 6 3.5544 0.6817 -0.0064 5 6 3.5925 -0.6645 -0.0046 6 7 2.2940 -1.0975 0.0033 7 6 1.8423 -2.4911 0.0080 8 6 1.5624 -2.9332 -1.4052 9 8 1.7248 -2.1604 -2.3258 10 7 1.1327 -4.1877 -1.6462 11 6 0.8612 -4.6176 -3.0201 12 6 0.3893 -6.0730 -3.0152 13 6 0.1051 -6.5219 -4.4501 14 7 -0.3474 -7.9195 -4.4454 15 6 -0.6310 -8.3856 -5.8093 16 6 -1.0908 -9.8200 -5.7645 17 8 -1.1745 -10.3971 -4.7010 18 7 -1.4100 -10.4613 -6.9061 19 6 -1.8278 -11.7664 -6.8655 20 1 -1.9016 -12.2805 -5.9186 21 6 -2.1574 -12.4274 -8.0424 22 7 -2.0682 -11.8017 -9.1945 23 14 -2.7274 -14.2055 -7.9869 24 1 -3.9587 -14.3051 -7.1627 25 1 -3.0147 -14.6764 -9.3656 26 1 -1.6615 -15.0485 -7.3883 27 1 -0.3634 0.0032 1.0277 28 1 -0.3633 0.8885 -0.5166 29 1 -0.3634 -0.8915 -0.5111 30 1 4.4099 1.3409 -0.0122 31 1 4.4776 -1.2834 -0.0088 32 1 0.9325 -2.5762 0.6023 33 1 2.6186 -3.1231 0.4395 34 1 1.0032 -4.8058 -0.9101 35 1 0.0849 -3.9859 -3.4519 36 1 1.7711 -4.5323 -3.6141 37 1 1.1653 -6.7051 -2.5834 38 1 -0.5208 -6.1579 -2.4214 39 1 -0.6710 -5.8898 -4.8815 40 1 1.0149 -6.4370 -5.0443 41 1 -1.1526 -8.0369 -3.8488 42 1 -1.4126 -7.7667 -6.2496 43 1 0.2735 -8.3131 -6.4134 44 1 -1.3434 -9.9997 -7.7567 45 1 -2.2979 -12.2632 -10.0161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176126093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:24 Heat of formation + Delta-G solvation = -11.894043 kcal Electronic energy + Delta-G solvation = -25327.196492 eV Core-core repulsion = 21380.745885 eV Total energy + Delta-G solvation = -3946.450607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.49171 -40.07672 -38.37102 -36.73173 -35.06752 -34.42212 -33.89165 -32.08225 -31.72497 -31.19469 -28.75001 -27.23756 -26.78417 -24.82386 -23.30803 -21.88797 -21.78295 -21.32623 -20.06105 -19.27191 -18.04142 -17.85893 -17.66031 -16.56071 -16.37197 -15.82258 -15.75018 -15.47147 -15.00922 -14.62767 -14.44373 -14.42918 -14.07959 -14.04913 -13.56414 -13.48959 -13.38023 -13.18673 -13.00205 -12.74131 -12.71553 -12.14690 -11.94652 -11.92355 -11.52108 -11.50487 -11.14952 -11.00800 -10.79948 -10.46965 -10.28616 -10.24609 -9.86313 -9.61177 -9.53552 -8.64096 -8.52837 -8.14240 -7.99892 -6.44867 -3.86010 1.57515 1.96787 2.17433 2.73126 2.88118 3.17535 3.23648 3.27758 3.86521 3.99410 4.03589 4.05899 4.15053 4.23434 4.33774 4.40527 4.67866 4.82533 4.91602 4.92331 5.09280 5.10084 5.14190 5.21720 5.30668 5.36355 5.39368 5.50486 5.52949 5.71945 5.79447 5.89228 5.89851 5.92144 5.96485 6.21988 6.43647 6.73157 6.91406 7.11343 7.51752 7.56626 7.59201 7.79893 8.02351 8.57471 9.14182 9.50441 10.01651 10.72707 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.050209 B = 0.001386 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.537141 B =20196.445608 C =20260.148417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.219 3.781 3 N -0.492 5.492 4 C -0.025 4.025 5 C -0.052 4.052 6 N -0.444 5.444 7 C 0.085 3.915 8 C 0.492 3.508 9 O -0.518 6.518 10 N -0.724 5.724 11 C 0.121 3.879 12 C -0.129 4.129 13 C 0.062 3.938 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.585 6.585 18 N -0.562 5.562 19 C -0.302 4.302 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.242 20.311 17.854 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 N -0.211 5.211 4 C -0.172 4.172 5 C -0.184 4.184 6 N -0.128 5.128 7 C -0.042 4.042 8 C 0.276 3.724 9 O -0.392 6.392 10 N -0.377 5.377 11 C -0.003 4.003 12 C -0.167 4.167 13 C -0.068 4.068 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.469 6.469 18 N -0.199 5.199 19 C -0.431 4.431 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.187 0.813 31 H 0.191 0.809 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.583 20.829 17.685 28.357 hybrid contribution -0.649 -1.437 -0.593 1.684 sum 6.935 19.392 17.092 26.763 Atomic orbital electron populations 1.20188 0.85092 1.04250 1.03237 1.23264 0.95633 0.81111 1.04292 1.70253 1.02362 1.28037 1.20443 1.22255 0.94778 0.92710 1.07487 1.22649 0.86628 0.97020 1.12070 1.44840 1.06863 1.05743 1.55351 1.21670 1.04387 0.82167 0.96016 1.20738 0.78010 0.82481 0.91198 1.90822 1.50392 1.52675 1.45342 1.45944 1.68252 1.13073 1.10403 1.21384 1.01470 0.95362 0.82074 1.21746 1.02589 0.93991 0.98374 1.21825 1.00345 0.89085 0.95574 1.60059 1.41820 1.17985 1.10292 1.21673 1.00503 0.95513 0.90532 1.19793 0.84606 0.88012 0.85091 1.90515 1.58431 1.68254 1.29725 1.41859 1.58165 1.12561 1.07302 1.19661 1.40973 0.87490 0.95020 0.87954 1.25269 0.97558 1.00394 0.94637 1.69600 1.48675 1.37979 0.97972 0.85908 0.79295 0.81834 0.77120 1.19907 1.20948 1.19868 0.90102 0.88960 0.91163 0.81257 0.80929 0.85933 0.85751 0.76155 0.91207 0.91022 0.90019 0.91134 0.95196 0.90756 0.83188 0.93782 0.89540 0.77428 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.04 36.00 0.36 -0.10 16 2 C 0.22 2.20 7.88 -155.41 -1.23 0.97 16 3 N -0.49 -5.99 11.25 -10.81 -0.12 -6.11 16 4 C -0.03 -0.25 11.87 -17.81 -0.21 -0.47 16 5 C -0.05 -0.44 11.58 -16.56 -0.19 -0.63 16 6 N -0.44 -3.68 2.24 -115.18 -0.26 -3.94 16 7 C 0.08 0.38 6.15 -5.19 -0.03 0.35 16 8 C 0.49 3.75 7.90 -10.98 -0.09 3.67 16 9 O -0.52 -6.65 16.42 5.56 0.09 -6.56 16 10 N -0.72 -4.08 5.56 -60.30 -0.33 -4.42 16 11 C 0.12 0.91 5.67 -4.04 -0.02 0.88 16 12 C -0.13 -1.01 5.59 -26.73 -0.15 -1.16 16 13 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 14 N -0.67 -10.01 6.13 -115.06 -0.70 -10.71 16 15 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 16 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 17 O -0.58 -15.58 15.78 5.55 0.09 -15.50 16 18 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 23 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 30 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.12 0.20 7.94 -51.93 -0.41 -0.21 16 33 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.40 1.06 8.47 -40.82 -0.35 0.71 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.32 8.43 -39.29 -0.33 4.98 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -37.62 389.84 -8.49 -46.11 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.83 Total: 10.07 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -1.94 Total: 7.11 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.75 Total: -62.87 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.18 Total: -22.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.62 -8.49 -46.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176126093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.215 kcal (2) G-P(sol) polarization free energy of solvation -37.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds