Wall clock time and date at job start Fri Apr 10 2020 18:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30493 * 125.65484 * 2 1 4 4 C 1.34132 * 109.26007 * 180.29184 * 3 2 1 5 5 C 1.34675 * 108.01601 * 359.73026 * 4 3 2 6 6 N 1.35053 * 125.64597 * 179.82933 * 2 1 3 7 7 C 1.46499 * 126.39601 * 359.97164 * 6 2 1 8 8 C 1.50701 * 109.46992 * 84.71660 * 7 6 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47452 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47342 * 179.97438 * 13 12 11 15 15 C 1.46894 * 110.99937 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46893 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00237 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99895 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00031 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00230 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00171 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99842 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00047 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47129 * 60.00435 * 23 21 19 25 25 H 1.48499 * 109.46582 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46949 * 300.00266 * 23 21 19 27 27 H 1.09000 * 109.47221 * 270.17745 * 1 2 3 28 28 H 1.09007 * 109.46854 * 30.17396 * 1 2 3 29 29 H 1.09001 * 109.47535 * 150.17412 * 1 2 3 30 30 H 1.08002 * 125.99344 * 179.72408 * 4 3 2 31 31 H 1.08004 * 126.58696 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47391 * 324.71651 * 7 6 2 33 33 H 1.09001 * 109.46813 * 204.71707 * 7 6 2 34 34 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47487 * 300.00114 * 11 10 8 36 36 H 1.09002 * 109.47182 * 60.00342 * 11 10 8 37 37 H 1.09001 * 109.47289 * 299.99909 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99993 * 12 11 10 39 39 H 1.08998 * 109.47061 * 300.00668 * 13 12 11 40 40 H 1.09002 * 109.46668 * 60.00355 * 13 12 11 41 41 H 1.00899 * 110.99915 * 56.04913 * 14 13 12 42 42 H 1.08993 * 109.47574 * 300.00148 * 15 14 13 43 43 H 1.09005 * 109.46819 * 60.00639 * 15 14 13 44 44 H 0.97005 * 119.99795 * 0.02562 * 18 16 15 45 45 H 0.96990 * 120.00032 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0603 0.0000 4 6 3.5544 0.6817 -0.0064 5 6 3.5925 -0.6645 -0.0046 6 7 2.2940 -1.0975 0.0033 7 6 1.8423 -2.4911 0.0080 8 6 1.5624 -2.9332 -1.4052 9 8 1.7248 -2.1604 -2.3258 10 7 1.1327 -4.1877 -1.6462 11 6 0.8612 -4.6176 -3.0201 12 6 0.3893 -6.0730 -3.0152 13 6 0.1051 -6.5219 -4.4501 14 7 -0.3474 -7.9195 -4.4454 15 6 -0.6310 -8.3856 -5.8093 16 6 -1.0908 -9.8200 -5.7645 17 8 -1.1745 -10.3971 -4.7010 18 7 -1.4100 -10.4613 -6.9061 19 6 -1.8278 -11.7664 -6.8655 20 1 -1.9016 -12.2805 -5.9186 21 6 -2.1574 -12.4274 -8.0424 22 7 -2.0682 -11.8017 -9.1945 23 14 -2.7274 -14.2055 -7.9869 24 1 -3.9587 -14.3051 -7.1627 25 1 -3.0147 -14.6764 -9.3656 26 1 -1.6615 -15.0485 -7.3883 27 1 -0.3634 0.0032 1.0277 28 1 -0.3633 0.8885 -0.5166 29 1 -0.3634 -0.8915 -0.5111 30 1 4.4099 1.3409 -0.0122 31 1 4.4776 -1.2834 -0.0088 32 1 0.9325 -2.5762 0.6023 33 1 2.6186 -3.1231 0.4395 34 1 1.0032 -4.8058 -0.9101 35 1 0.0849 -3.9859 -3.4519 36 1 1.7711 -4.5323 -3.6141 37 1 1.1653 -6.7051 -2.5834 38 1 -0.5208 -6.1579 -2.4214 39 1 -0.6710 -5.8898 -4.8815 40 1 1.0149 -6.4370 -5.0443 41 1 -1.1526 -8.0369 -3.8488 42 1 -1.4126 -7.7667 -6.2496 43 1 0.2735 -8.3131 -6.4134 44 1 -1.3434 -9.9997 -7.7567 45 1 -2.2979 -12.2632 -10.0161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176126093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:24 Heat of formation + Delta-G solvation = -41.681070 kcal Electronic energy + Delta-G solvation = -25328.488154 eV Core-core repulsion = 21380.745885 eV Total energy + Delta-G solvation = -3947.742269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.10078 -40.70632 -40.15414 -37.68622 -36.15799 -35.67319 -35.01227 -33.29863 -32.64481 -32.49778 -29.47980 -28.26470 -27.60264 -26.32915 -24.47360 -22.61435 -22.41647 -21.96866 -21.08582 -20.62578 -19.90560 -18.54727 -18.22801 -17.81857 -17.28734 -16.85397 -16.59869 -16.47247 -16.16616 -15.89959 -15.79861 -15.25919 -15.09305 -15.04424 -14.63680 -14.51027 -14.34581 -13.94314 -13.58667 -13.49801 -13.45467 -13.27349 -13.23212 -13.09919 -12.85134 -12.71923 -12.43651 -12.42804 -12.12156 -11.85704 -11.50397 -11.49988 -10.98730 -10.51396 -10.35347 -10.20396 -10.02180 -9.34506 -9.27767 -8.46728 -5.95836 0.96676 1.40273 1.42445 1.42739 1.53349 1.68270 2.04812 2.16658 2.21582 2.30223 2.94000 3.20625 3.51834 3.58636 3.61313 3.76079 3.90464 4.00287 4.13018 4.14351 4.17554 4.33004 4.42488 4.47715 4.54753 4.56243 4.58171 4.67971 4.69873 4.77310 4.83196 5.00462 5.13916 5.19285 5.28946 5.35464 5.40542 5.82673 5.87600 6.08804 6.17000 6.40956 6.45975 6.59498 7.10480 7.12005 7.14354 7.55765 8.10592 8.70333 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.050209 B = 0.001386 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.537141 B =20196.445608 C =20260.148417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.202 3.798 3 N -0.538 5.538 4 C -0.058 4.058 5 C -0.049 4.049 6 N -0.446 5.446 7 C 0.085 3.915 8 C 0.493 3.507 9 O -0.577 6.577 10 N -0.708 5.708 11 C 0.128 3.872 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.080 0.920 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.181 0.819 31 H 0.203 0.797 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.422 0.578 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.346 0.654 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 19.613 18.849 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 N -0.258 5.258 4 C -0.204 4.204 5 C -0.181 4.181 6 N -0.129 5.129 7 C -0.041 4.041 8 C 0.279 3.721 9 O -0.456 6.456 10 N -0.362 5.362 11 C 0.003 3.997 12 C -0.152 4.152 13 C -0.069 4.069 14 N -0.315 5.315 15 C -0.069 4.069 16 C 0.224 3.776 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.197 1.197 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.198 0.802 31 H 0.220 0.780 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.165 0.835 42 H 0.084 0.916 43 H 0.120 0.880 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.541 20.114 18.700 28.481 hybrid contribution -0.608 -1.198 -0.882 1.607 sum 6.933 18.916 17.819 26.896 Atomic orbital electron populations 1.20276 0.83340 1.04225 1.04670 1.23793 0.96840 0.81435 1.04039 1.70185 1.03592 1.29931 1.22111 1.22646 0.94737 0.94147 1.08916 1.23140 0.87721 0.96864 1.10344 1.45038 1.06551 1.06874 1.54418 1.22039 1.07238 0.80572 0.94224 1.21268 0.76794 0.82155 0.91913 1.90810 1.53098 1.54299 1.47350 1.45785 1.67111 1.12959 1.10296 1.21171 1.00591 0.94911 0.82979 1.21581 1.03110 0.93839 0.96690 1.21922 1.00501 0.86809 0.97632 1.60062 1.41700 1.20782 1.08924 1.21532 1.01610 0.91333 0.92388 1.20887 0.82686 0.90157 0.83846 1.90481 1.59574 1.69910 1.30982 1.41943 1.58843 1.12135 1.08117 1.19657 1.43198 0.89072 0.94709 0.90182 1.26049 0.97002 1.04170 0.93981 1.69664 1.48660 1.39399 0.98382 0.84981 0.78735 0.76944 0.77636 1.19594 1.19579 1.19710 0.87841 0.89896 0.90236 0.80226 0.78033 0.82521 0.82114 0.74026 0.92067 0.92262 0.89980 0.89995 0.94208 0.90573 0.83516 0.91589 0.87961 0.76992 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.04 71.23 0.72 -0.11 16 2 C 0.20 3.94 7.88 138.13 1.09 5.02 16 3 N -0.54 -13.43 11.25 -188.12 -2.12 -15.55 16 4 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16 5 C -0.05 -0.76 11.58 83.09 0.96 0.20 16 6 N -0.45 -6.63 2.24 -518.33 -1.16 -7.79 16 7 C 0.08 0.48 6.15 85.63 0.53 1.01 16 8 C 0.49 6.46 7.90 87.66 0.69 7.15 16 9 O -0.58 -14.47 16.42 -3.03 -0.05 -14.52 16 10 N -0.71 -6.09 5.56 -463.06 -2.57 -8.67 16 11 C 0.13 1.68 5.67 86.38 0.49 2.17 16 12 C -0.11 -1.51 5.59 30.60 0.17 -1.34 16 13 C 0.06 1.16 5.69 86.31 0.49 1.65 16 14 N -0.68 -19.28 6.13 -517.94 -3.17 -22.45 16 15 C 0.06 2.08 6.17 85.56 0.53 2.60 16 16 C 0.44 20.24 7.82 87.66 0.69 20.93 16 17 O -0.62 -33.57 15.78 -3.06 -0.05 -33.62 16 18 N -0.57 -28.97 5.29 -306.98 -1.62 -30.60 16 19 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.17 13.05 21.67 0.28 -48.89 16 23 Si 0.99 42.25 29.55 68.60 2.03 44.27 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.08 0.80 7.84 -2.39 -0.02 0.78 16 30 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.16 -0.16 7.94 -2.39 -0.02 -0.18 16 33 H 0.16 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.42 0.66 8.47 -92.71 -0.79 -0.12 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.35 10.07 8.43 -89.69 -0.76 9.32 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 44 H 0.40 19.03 7.90 -92.70 -0.73 18.30 16 45 H 0.28 13.93 8.31 -92.72 -0.77 13.16 16 Total: -1.00 -84.44 389.84 -1.06 -85.50 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -1.24 Total: 31.48 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 8.62 Total: 20.83 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -10.37 Total: -133.95 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.10 Total: -48.14 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -84.44 -1.06 -85.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176126093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.817 kcal (2) G-P(sol) polarization free energy of solvation -84.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds