Wall clock time and date at job start Fri Apr 10 2020 18:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48503 * 109.47163 * 269.99834 * 3 2 1 5 5 H 1.48497 * 109.47014 * 30.00194 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00172 * 3 2 1 7 7 C 1.38811 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00190 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99983 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47407 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46868 * 60.00154 * 11 10 9 13 13 C 1.54804 * 109.47170 * 179.97438 * 11 10 9 14 14 N 1.45120 * 109.52981 * 187.88653 * 13 11 10 15 15 C 1.34780 * 118.75163 * 90.71221 * 14 13 11 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 15 20 20 C 1.35316 * 125.86704 * 124.71306 * 19 18 17 21 21 C 1.35353 * 106.17126 * 179.91058 * 20 19 18 22 22 N 1.33761 * 106.49911 * 0.34946 * 21 20 19 23 23 N 1.28636 * 108.88915 * 359.77651 * 22 21 20 24 24 C 1.47501 * 122.48912 * 270.98206 * 14 13 11 25 25 C 1.53205 * 111.23671 * 41.23689 * 24 14 13 26 26 C 1.51543 * 109.43054 * 40.26227 * 25 24 14 27 27 O 1.38013 * 109.46344 * 300.00919 * 11 10 9 28 28 H 0.97001 * 120.00078 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00177 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47690 * 59.99077 * 10 9 7 31 31 H 1.09001 * 109.47024 * 299.99636 * 10 9 7 32 32 H 1.08996 * 109.45965 * 67.87223 * 13 11 10 33 33 H 1.08996 * 109.46318 * 307.91110 * 13 11 10 34 34 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 35 35 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 36 36 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 37 37 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 38 38 H 1.07999 * 126.91196 * 0.02562 * 20 19 18 39 39 H 1.08001 * 126.74905 * 180.12885 * 21 20 19 40 40 H 1.09011 * 109.16339 * 161.74890 * 24 14 13 41 41 H 1.08994 * 109.17313 * 280.95466 * 24 14 13 42 42 H 1.08998 * 109.60720 * 280.22763 * 25 24 14 43 43 H 1.08995 * 109.42757 * 160.18603 * 25 24 14 44 44 H 1.08998 * 109.58498 * 148.72139 * 26 25 24 45 45 H 1.09006 * 109.58366 * 28.28954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1913 -0.0009 12 1 5.8797 -1.6205 0.8897 13 6 6.3904 -3.5319 -0.0014 14 7 7.8062 -3.2748 0.1865 15 6 8.3009 -3.2559 1.4400 16 8 7.5662 -3.4512 2.3850 17 6 9.7669 -2.9910 1.6676 18 6 10.0642 -3.0238 3.1681 19 7 11.4894 -2.7669 3.3893 20 6 12.0071 -1.7967 4.1778 21 6 13.3524 -1.9203 4.0936 22 7 13.5887 -2.9415 3.2627 23 7 12.4644 -3.4218 2.8626 24 6 8.7232 -3.0276 -0.9421 25 6 8.0757 -2.1226 -1.9953 26 6 7.2898 -1.0268 -1.3038 27 8 5.9496 -1.4664 -1.1271 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3621 0.0004 30 1 3.8491 -3.0415 -0.8917 31 1 3.8485 -3.0433 0.8881 32 1 6.2367 -4.0395 -0.9537 33 1 6.0250 -4.1625 0.8090 34 1 10.3570 -3.7562 1.1631 35 1 10.0254 -2.0105 1.2677 36 1 9.4742 -2.2584 3.6722 37 1 9.8057 -4.0041 3.5684 38 1 11.4574 -1.0710 4.7589 39 1 14.0899 -1.3116 4.5955 40 1 9.6294 -2.5504 -0.5689 41 1 8.9853 -3.9787 -1.4053 42 1 7.4045 -2.7113 -2.6206 43 1 8.8521 -1.6760 -2.6162 44 1 7.3010 -0.1262 -1.9177 45 1 7.7359 -0.8148 -0.3321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200359919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:44 Heat of formation + Delta-G solvation = 49.882762 kcal Electronic energy + Delta-G solvation = -27700.686883 eV Core-core repulsion = 23756.915119 eV Total energy + Delta-G solvation = -3943.771764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.61668 -40.91793 -38.87631 -35.97139 -35.72145 -34.82983 -33.05046 -31.74616 -31.36780 -31.20470 -29.24760 -27.15637 -26.09546 -24.77560 -23.07723 -22.54377 -21.86199 -21.64692 -21.11437 -19.29260 -18.44511 -17.72922 -17.21297 -16.97044 -16.67326 -16.55688 -16.19582 -15.55956 -15.27107 -14.85516 -14.55791 -14.43104 -14.23936 -13.89635 -13.65891 -13.39266 -13.17882 -12.93059 -12.68536 -12.55233 -12.33538 -12.19177 -11.93873 -11.90040 -11.56498 -11.29311 -11.28540 -11.02350 -10.85061 -10.56437 -10.46979 -10.18829 -10.07509 -9.77732 -9.63399 -9.56694 -8.88405 -8.81639 -7.19387 -5.73690 -3.08320 1.19654 1.82968 2.17575 2.21666 2.62822 3.40361 3.44507 3.47221 3.73042 3.84945 3.96362 4.07406 4.22154 4.38673 4.48526 4.61898 4.63005 4.66800 4.74640 4.83043 4.88730 4.99203 5.07129 5.12233 5.13340 5.25330 5.32214 5.35628 5.39852 5.55962 5.62449 5.72341 5.77121 5.79073 5.88256 5.93721 6.13636 6.23578 6.51135 6.62648 6.90157 7.72686 7.76751 8.02162 8.12377 8.45267 9.24871 9.97298 10.17980 11.44747 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.002704 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.599412 B =10353.696015 C =10811.257411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.171 3.829 11 C 0.085 3.915 12 H 0.051 0.949 13 C 0.080 3.920 14 N -0.605 5.605 15 C 0.514 3.486 16 O -0.531 6.531 17 C -0.155 4.155 18 C 0.130 3.870 19 N -0.291 5.291 20 C -0.046 4.046 21 C -0.054 4.054 22 N -0.273 5.273 23 N -0.087 5.087 24 C 0.103 3.897 25 C -0.168 4.168 26 C 0.072 3.928 27 O -0.371 6.371 28 H 0.259 0.741 29 H 0.364 0.636 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.192 0.808 39 H 0.190 0.810 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.162 -4.720 2.721 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.025 3.975 12 H 0.069 0.931 13 C -0.043 4.043 14 N -0.338 5.338 15 C 0.300 3.700 16 O -0.408 6.408 17 C -0.195 4.195 18 C 0.009 3.991 19 N -0.085 5.085 20 C -0.197 4.197 21 C -0.211 4.211 22 N -0.138 5.138 23 N -0.067 5.067 24 C -0.020 4.020 25 C -0.206 4.206 26 C -0.005 4.005 27 O -0.289 6.289 28 H 0.069 0.931 29 H 0.197 0.803 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.209 0.791 39 H 0.207 0.793 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 26.767 -6.059 2.132 27.527 hybrid contribution 0.451 2.133 0.835 2.335 sum 27.219 -3.926 2.967 27.660 Atomic orbital electron populations 1.69704 1.05069 1.25771 1.57785 1.24651 0.95230 0.97206 1.02122 0.86497 0.79052 0.84909 0.77766 1.21041 1.21857 1.20531 1.19057 0.80527 0.94779 1.42765 0.89175 1.42542 1.03906 1.02058 1.91007 1.20595 0.85499 0.90194 0.99435 1.22340 0.96479 0.90564 0.88140 0.93147 1.22457 0.78800 0.99154 1.03890 1.47913 1.09539 1.70348 1.05975 1.20261 0.89374 0.77163 0.83159 1.90778 1.60352 1.48818 1.40832 1.21941 0.95259 1.05785 0.96557 1.21880 0.73653 1.06396 0.97184 1.47562 1.09064 1.21535 1.30322 1.23790 0.95775 0.97929 1.02205 1.23657 0.94783 1.00011 1.02660 1.75127 1.17059 1.09832 1.11830 1.78291 0.90038 1.19025 1.19353 1.21989 0.92123 1.00268 0.87573 1.22447 1.01122 0.98594 0.98424 1.22151 0.82949 0.96117 0.99269 1.86436 1.27064 1.71900 1.43459 0.93108 0.80290 0.94655 0.93879 0.89422 0.88430 0.86911 0.87971 0.86470 0.87070 0.79116 0.79288 0.89958 0.90945 0.89576 0.89450 0.89187 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.80 13.97 55.49 0.78 -29.02 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 22.72 27.74 -169.99 -4.71 18.00 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 7 C -0.24 -7.00 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -18.49 5.29 -59.91 -0.32 -18.80 16 10 C 0.17 3.35 5.95 -4.04 -0.02 3.33 16 11 C 0.08 1.34 2.73 -25.78 -0.07 1.27 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 13 C 0.08 0.99 4.87 -3.83 -0.02 0.97 16 14 N -0.60 -5.98 2.20 -172.70 -0.38 -6.36 16 15 C 0.51 5.23 7.63 -10.98 -0.08 5.14 16 16 O -0.53 -7.31 15.41 5.56 0.09 -7.22 16 17 C -0.15 -1.05 4.17 -27.88 -0.12 -1.16 16 18 C 0.13 0.88 5.74 -4.04 -0.02 0.86 16 19 N -0.29 -2.35 3.44 -61.26 -0.21 -2.56 16 20 C -0.05 -0.30 11.57 -17.04 -0.20 -0.49 16 21 C -0.05 -0.41 12.05 -17.74 -0.21 -0.63 16 22 N -0.27 -3.04 12.41 30.23 0.38 -2.66 16 23 N -0.09 -0.94 12.91 60.35 0.78 -0.16 16 24 C 0.10 0.71 5.96 -3.39 -0.02 0.69 16 25 C -0.17 -1.31 5.78 -27.36 -0.16 -1.47 16 26 C 0.07 0.79 6.37 36.42 0.23 1.03 16 27 O -0.37 -5.81 9.18 -26.53 -0.24 -6.05 16 28 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 29 H 0.36 8.95 5.39 -40.82 -0.22 8.73 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.10 1.28 7.27 -51.93 -0.38 0.90 16 34 H 0.11 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.10 0.58 7.40 -51.93 -0.38 0.19 16 36 H 0.12 0.68 8.03 -51.93 -0.42 0.26 16 37 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.19 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.08 0.41 5.88 -51.92 -0.31 0.11 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.77 8.01 -51.93 -0.42 0.36 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.48 7.39 -51.93 -0.38 0.10 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -37.36 367.04 -6.00 -43.36 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.74 Total: 3.57 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.95 Total: 2.39 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 1.02 Total: -59.57 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.16 Total: -13.28 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.36 -6.00 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200359919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.242 kcal (2) G-P(sol) polarization free energy of solvation -37.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds