Wall clock time and date at job start Fri Apr 10 2020 18:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48503 * 109.47163 * 269.99834 * 3 2 1 5 5 H 1.48497 * 109.47014 * 30.00194 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00172 * 3 2 1 7 7 C 1.38811 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00190 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99983 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47407 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46868 * 60.00154 * 11 10 9 13 13 C 1.54804 * 109.47170 * 179.97438 * 11 10 9 14 14 N 1.45120 * 109.52981 * 187.88653 * 13 11 10 15 15 C 1.34780 * 118.75163 * 90.71221 * 14 13 11 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 15 20 20 C 1.35316 * 125.86704 * 124.71306 * 19 18 17 21 21 C 1.35353 * 106.17126 * 179.91058 * 20 19 18 22 22 N 1.33761 * 106.49911 * 0.34946 * 21 20 19 23 23 N 1.28636 * 108.88915 * 359.77651 * 22 21 20 24 24 C 1.47501 * 122.48912 * 270.98206 * 14 13 11 25 25 C 1.53205 * 111.23671 * 41.23689 * 24 14 13 26 26 C 1.51543 * 109.43054 * 40.26227 * 25 24 14 27 27 O 1.38013 * 109.46344 * 300.00919 * 11 10 9 28 28 H 0.97001 * 120.00078 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00177 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47690 * 59.99077 * 10 9 7 31 31 H 1.09001 * 109.47024 * 299.99636 * 10 9 7 32 32 H 1.08996 * 109.45965 * 67.87223 * 13 11 10 33 33 H 1.08996 * 109.46318 * 307.91110 * 13 11 10 34 34 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 35 35 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 36 36 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 37 37 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 38 38 H 1.07999 * 126.91196 * 0.02562 * 20 19 18 39 39 H 1.08001 * 126.74905 * 180.12885 * 21 20 19 40 40 H 1.09011 * 109.16339 * 161.74890 * 24 14 13 41 41 H 1.08994 * 109.17313 * 280.95466 * 24 14 13 42 42 H 1.08998 * 109.60720 * 280.22763 * 25 24 14 43 43 H 1.08995 * 109.42757 * 160.18603 * 25 24 14 44 44 H 1.08998 * 109.58498 * 148.72139 * 26 25 24 45 45 H 1.09006 * 109.58366 * 28.28954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1913 -0.0009 12 1 5.8797 -1.6205 0.8897 13 6 6.3904 -3.5319 -0.0014 14 7 7.8062 -3.2748 0.1865 15 6 8.3009 -3.2559 1.4400 16 8 7.5662 -3.4512 2.3850 17 6 9.7669 -2.9910 1.6676 18 6 10.0642 -3.0238 3.1681 19 7 11.4894 -2.7669 3.3893 20 6 12.0071 -1.7967 4.1778 21 6 13.3524 -1.9203 4.0936 22 7 13.5887 -2.9415 3.2627 23 7 12.4644 -3.4218 2.8626 24 6 8.7232 -3.0276 -0.9421 25 6 8.0757 -2.1226 -1.9953 26 6 7.2898 -1.0268 -1.3038 27 8 5.9496 -1.4664 -1.1271 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3621 0.0004 30 1 3.8491 -3.0415 -0.8917 31 1 3.8485 -3.0433 0.8881 32 1 6.2367 -4.0395 -0.9537 33 1 6.0250 -4.1625 0.8090 34 1 10.3570 -3.7562 1.1631 35 1 10.0254 -2.0105 1.2677 36 1 9.4742 -2.2584 3.6722 37 1 9.8057 -4.0041 3.5684 38 1 11.4574 -1.0710 4.7589 39 1 14.0899 -1.3116 4.5955 40 1 9.6294 -2.5504 -0.5689 41 1 8.9853 -3.9787 -1.4053 42 1 7.4045 -2.7113 -2.6206 43 1 8.8521 -1.6760 -2.6162 44 1 7.3010 -0.1262 -1.9177 45 1 7.7359 -0.8148 -0.3321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200359919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:43 Heat of formation + Delta-G solvation = 22.131130 kcal Electronic energy + Delta-G solvation = -27701.890284 eV Core-core repulsion = 23756.915119 eV Total energy + Delta-G solvation = -3944.975165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.19805 -41.78139 -39.87975 -37.07730 -36.41727 -36.26377 -34.39362 -33.04172 -32.38381 -31.93085 -30.46488 -28.19366 -26.95178 -25.95233 -24.08574 -23.58839 -22.93458 -22.38470 -22.26418 -20.04203 -19.81643 -19.06642 -18.03160 -17.71548 -17.65403 -17.37754 -17.01798 -16.56664 -16.30340 -15.93151 -15.77376 -15.25529 -15.17418 -14.94839 -14.83526 -14.63158 -14.20658 -14.01213 -13.85797 -13.73161 -13.45439 -13.25854 -12.87535 -12.85323 -12.60458 -12.48823 -12.37868 -12.14168 -12.04431 -11.88044 -11.83910 -11.51504 -11.19927 -11.03636 -10.97717 -10.60843 -10.33263 -9.73071 -9.32450 -8.04203 -5.37409 0.64357 1.27565 1.35076 1.39503 1.41058 1.46679 1.63348 1.90871 2.47109 2.66647 3.27298 3.31306 3.34612 3.46821 3.58626 3.74352 3.80270 3.91214 4.01579 4.04483 4.12395 4.22132 4.25608 4.27340 4.33458 4.41397 4.43689 4.48593 4.57444 4.67018 4.71892 4.82095 4.85170 4.86337 5.05757 5.09376 5.16246 5.28343 5.43389 5.61707 5.72303 6.15249 6.19502 6.69047 6.96098 7.05506 7.51717 7.81184 8.01390 9.17243 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.002704 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.599412 B =10353.696015 C =10811.257411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.235 4.235 8 H 0.059 0.941 9 N -0.753 5.753 10 C 0.164 3.836 11 C 0.102 3.898 12 H 0.034 0.966 13 C 0.092 3.908 14 N -0.605 5.605 15 C 0.512 3.488 16 O -0.573 6.573 17 C -0.141 4.141 18 C 0.130 3.870 19 N -0.290 5.290 20 C -0.035 4.035 21 C -0.064 4.064 22 N -0.311 5.311 23 N -0.120 5.120 24 C 0.099 3.901 25 C -0.159 4.159 26 C 0.062 3.938 27 O -0.399 6.399 28 H 0.259 0.741 29 H 0.366 0.634 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.229 0.771 39 H 0.217 0.783 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.370 -3.462 2.475 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.366 4.366 8 H 0.077 0.923 9 N -0.398 5.398 10 C 0.037 3.963 11 C 0.041 3.959 12 H 0.052 0.948 13 C -0.032 4.032 14 N -0.337 5.337 15 C 0.301 3.699 16 O -0.452 6.452 17 C -0.181 4.181 18 C 0.009 3.991 19 N -0.083 5.083 20 C -0.187 4.187 21 C -0.221 4.221 22 N -0.176 5.176 23 N -0.100 5.100 24 C -0.022 4.022 25 C -0.197 4.197 26 C -0.013 4.013 27 O -0.318 6.318 28 H 0.068 0.932 29 H 0.199 0.801 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.122 0.878 38 H 0.245 0.755 39 H 0.233 0.767 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.116 0.884 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 30.051 -4.840 1.853 30.494 hybrid contribution -0.557 1.692 0.917 2.003 sum 29.494 -3.148 2.770 29.790 Atomic orbital electron populations 1.69881 1.07013 1.26737 1.59673 1.25503 0.96173 1.01278 1.02603 0.85344 0.78280 0.79596 0.78124 1.20284 1.21883 1.18401 1.19059 0.82520 0.93676 1.41379 0.92331 1.42548 1.02477 1.03963 1.90862 1.20751 0.88281 0.88166 0.99075 1.21932 0.93932 0.92302 0.87691 0.94839 1.22127 0.80233 0.96827 1.04061 1.47996 1.08714 1.69919 1.07035 1.20812 0.90498 0.76029 0.82571 1.90764 1.61682 1.50650 1.42131 1.21856 0.92463 1.07041 0.96779 1.21921 0.73192 1.06565 0.97406 1.47667 1.08996 1.21519 1.30162 1.24424 0.95667 0.97434 1.01140 1.24229 0.96175 0.99507 1.02198 1.75074 1.17776 1.11413 1.13352 1.78242 0.90516 1.20283 1.20926 1.22264 0.91999 1.01377 0.86528 1.22381 1.01305 0.97556 0.98485 1.22457 0.81180 0.97624 1.00077 1.86361 1.30177 1.72262 1.42979 0.93246 0.80066 0.94681 0.94131 0.88172 0.89678 0.85964 0.86061 0.85247 0.87805 0.75503 0.76678 0.87389 0.89123 0.90723 0.86353 0.88391 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.96 47.05 27.74 68.60 1.90 48.95 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -11.70 6.52 99.48 0.65 -11.05 16 7 C -0.24 -13.97 10.47 84.03 0.88 -13.09 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 9 N -0.75 -37.30 5.29 -343.46 -1.82 -39.12 16 10 C 0.16 6.52 5.95 86.38 0.51 7.04 16 11 C 0.10 3.15 2.73 31.21 0.09 3.23 16 12 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 13 C 0.09 2.17 4.87 87.25 0.42 2.59 16 14 N -0.60 -10.58 2.20 -818.70 -1.80 -12.38 16 15 C 0.51 9.45 7.63 87.66 0.67 10.12 16 16 O -0.57 -15.36 15.41 -3.03 -0.05 -15.41 16 17 C -0.14 -1.52 4.17 29.85 0.12 -1.39 16 18 C 0.13 1.49 5.74 86.38 0.50 1.99 16 19 N -0.29 -4.05 3.44 -347.73 -1.20 -5.24 16 20 C -0.04 -0.35 11.57 83.49 0.97 0.61 16 21 C -0.06 -0.83 12.05 83.73 1.01 0.18 16 22 N -0.31 -6.58 12.41 -58.26 -0.72 -7.30 16 23 N -0.12 -2.43 12.91 37.02 0.48 -1.96 16 24 C 0.10 0.99 5.96 86.26 0.51 1.50 16 25 C -0.16 -1.92 5.78 30.19 0.17 -1.74 16 26 C 0.06 1.21 6.37 71.50 0.46 1.66 16 27 O -0.40 -11.94 9.18 -117.84 -1.08 -13.02 16 28 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 29 H 0.37 17.66 5.39 -92.71 -0.50 17.16 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.10 8.11 -2.39 -0.02 2.08 16 33 H 0.08 2.23 7.27 -2.39 -0.02 2.21 16 34 H 0.12 1.15 8.02 -2.39 -0.02 1.13 16 35 H 0.12 0.88 7.40 -2.39 -0.02 0.86 16 36 H 0.13 1.17 8.03 -2.39 -0.02 1.15 16 37 H 0.10 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.23 0.34 8.06 -2.91 -0.02 0.31 16 39 H 0.22 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.11 0.57 5.88 -2.38 -0.01 0.55 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 1.12 8.01 -2.39 -0.02 1.11 16 43 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 0.91 7.39 -2.38 -0.02 0.89 16 Total: -1.00 -84.16 367.04 3.24 -80.92 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.44 Total: 19.17 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.78 Total: 9.28 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -4.76 Total: -129.88 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.13 Total: -28.43 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.95 kcal Total: -84.16 3.24 -80.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200359919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.055 kcal (2) G-P(sol) polarization free energy of solvation -84.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds