Wall clock time and date at job start Fri Apr 10 2020 18:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30826 * 125.95780 * 2 1 4 4 C 1.33245 * 109.82767 * 180.19311 * 3 2 1 5 5 C 1.50704 * 125.52753 * 179.85283 * 4 3 2 6 6 C 1.50696 * 109.47346 * 269.72147 * 5 4 3 7 7 O 1.21288 * 119.99945 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99789 * 180.02562 * 6 5 4 9 9 C 1.47504 * 118.76039 * 359.97438 * 8 6 5 10 10 C 1.53569 * 111.03023 * 221.65040 * 9 8 6 11 11 C 1.51540 * 109.57768 * 39.98490 * 10 9 8 12 12 O 1.42155 * 108.75849 * 268.59581 * 11 10 9 13 13 C 1.38015 * 119.43670 * 87.22027 * 12 11 10 14 14 H 1.09003 * 109.46972 * 56.58499 * 13 12 11 15 15 C 1.53004 * 109.46831 * 176.57250 * 13 12 11 16 16 N 1.46500 * 109.47127 * 300.00318 * 15 13 12 17 17 C 1.36936 * 119.99909 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00082 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99693 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00282 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99806 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46824 * 90.00194 * 21 19 17 23 23 H 1.48495 * 109.47136 * 210.00164 * 21 19 17 24 24 H 1.48500 * 109.47173 * 330.00350 * 21 19 17 25 25 C 1.45127 * 118.75534 * 180.02562 * 8 6 5 26 26 N 1.30708 * 108.94419 * 359.59536 * 4 3 2 27 27 N 1.34426 * 125.95941 * 179.75765 * 2 1 3 28 28 H 0.96999 * 126.82830 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47144 * 270.23845 * 1 2 3 30 30 H 1.08994 * 109.47102 * 30.24808 * 1 2 3 31 31 H 1.09000 * 109.46992 * 150.24708 * 1 2 3 32 32 H 1.09002 * 109.46677 * 149.71987 * 5 4 3 33 33 H 1.09005 * 109.46482 * 29.72348 * 5 4 3 34 34 H 1.08998 * 109.16054 * 101.25494 * 9 8 6 35 35 H 1.09000 * 109.16618 * 342.05122 * 9 8 6 36 36 H 1.09003 * 109.45722 * 279.95276 * 10 9 8 37 37 H 1.08997 * 109.45202 * 160.01296 * 10 9 8 38 38 H 1.08997 * 109.59138 * 148.81755 * 11 10 9 39 39 H 1.08990 * 109.59168 * 28.37745 * 11 10 9 40 40 H 1.08996 * 109.47171 * 59.99918 * 15 13 12 41 41 H 1.08995 * 109.47184 * 180.02562 * 15 13 12 42 42 H 0.97001 * 120.00138 * 359.97438 * 16 15 13 43 43 H 0.97002 * 120.00339 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.45926 * 210.70561 * 25 8 6 45 45 H 1.09000 * 109.45824 * 330.67468 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0042 5 6 4.7372 1.6237 -0.0087 6 6 5.1306 1.9292 -1.4310 7 8 4.5118 1.4367 -2.3505 8 7 6.1701 2.7498 -1.6811 9 6 6.9031 3.3341 -0.5423 10 6 7.2364 4.8108 -0.8007 11 6 6.0603 5.4861 -1.4767 12 8 6.2277 5.3934 -2.8853 13 6 5.7609 4.2788 -3.5519 14 1 4.6962 4.1559 -3.3532 15 6 5.9819 4.4543 -5.0557 16 7 5.2580 5.6401 -5.5205 17 6 5.3081 5.9989 -6.8411 18 1 5.8816 5.4079 -7.5399 19 6 4.6218 7.1223 -7.2816 20 7 3.9234 7.8428 -6.4299 21 14 4.6907 7.6122 -9.0829 22 1 3.5819 6.9523 -9.8181 23 1 4.5545 9.0862 -9.2006 24 1 5.9904 7.1873 -9.6621 25 6 6.5253 3.0260 -3.0609 26 7 3.6194 -0.6167 0.0017 27 7 2.2964 -1.0881 0.0046 28 1 2.0094 -2.0146 0.0089 29 1 -0.3633 0.0043 1.0277 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5100 32 1 5.5745 1.1532 0.5068 33 1 4.4702 2.5493 0.5013 34 1 7.8290 2.7795 -0.3903 35 1 6.2896 3.2575 0.3554 36 1 8.1130 4.8777 -1.4451 37 1 7.4443 5.3072 0.1472 38 1 6.0218 6.5346 -1.1815 39 1 5.1358 4.9879 -1.1850 40 1 7.0464 4.5773 -5.2546 41 1 5.6129 3.5742 -5.5823 42 1 4.7427 6.1707 -4.8930 43 1 3.4435 8.6276 -6.7378 44 1 7.5982 3.2047 -3.1309 45 1 6.2582 2.1714 -3.6826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200479329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:48 Heat of formation + Delta-G solvation = 28.601143 kcal Electronic energy + Delta-G solvation = -27798.224662 eV Core-core repulsion = 23853.530058 eV Total energy + Delta-G solvation = -3944.694604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38229 -40.50165 -38.42189 -35.61659 -34.52828 -33.95647 -32.78760 -32.59198 -30.88820 -30.58098 -28.64165 -27.84398 -26.54575 -24.98793 -22.89725 -21.85539 -21.62765 -20.96090 -20.76501 -18.99895 -18.10139 -17.57907 -17.07821 -16.50931 -16.30148 -15.89306 -15.77175 -15.04770 -14.70317 -14.50632 -14.18113 -13.94665 -13.77986 -13.57464 -13.22223 -13.14129 -12.95672 -12.93769 -12.61213 -12.47817 -12.17394 -12.06275 -11.88991 -11.58351 -11.30467 -10.91361 -10.75948 -10.71671 -10.39522 -10.23995 -10.19715 -9.99377 -9.85954 -9.63668 -9.55696 -9.32555 -8.76680 -8.51017 -6.77642 -5.63073 -2.90921 1.34475 2.35014 2.50520 2.55710 3.01080 3.52137 3.56397 3.58608 3.68511 4.03627 4.23176 4.37659 4.50103 4.62859 4.69528 4.76155 4.88423 4.97714 5.02481 5.04964 5.27770 5.33321 5.38739 5.42141 5.45481 5.51322 5.56135 5.67155 5.70212 5.90596 5.99401 6.03957 6.06680 6.15546 6.17446 6.41336 6.54371 6.73775 6.79408 6.86346 7.21137 7.80405 7.87117 8.08269 8.11240 8.55306 9.66702 10.25911 10.62242 11.59892 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.003011 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.665269 B = 9296.157379 C =10578.889978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.285 3.715 3 N -0.529 5.529 4 C 0.251 3.749 5 C -0.048 4.048 6 C 0.515 3.485 7 O -0.521 6.521 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.167 4.167 11 C 0.072 3.928 12 O -0.367 6.367 13 C 0.089 3.911 14 H 0.052 0.948 15 C 0.166 3.834 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.082 3.918 26 N -0.306 5.306 27 N -0.482 5.482 28 H 0.439 0.561 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.026 0.974 41 H 0.033 0.967 42 H 0.388 0.612 43 H 0.254 0.746 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 -16.505 21.776 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 N -0.258 5.258 4 C -0.032 4.032 5 C -0.090 4.090 6 C 0.301 3.699 7 O -0.396 6.396 8 N -0.343 5.343 9 C -0.019 4.019 10 C -0.205 4.205 11 C -0.004 4.004 12 O -0.285 6.285 13 C 0.029 3.971 14 H 0.070 0.930 15 C 0.038 3.962 16 N -0.369 5.369 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.041 4.041 26 N -0.135 5.135 27 N -0.201 5.201 28 H 0.285 0.715 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.222 0.778 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.665 -16.642 21.017 26.816 hybrid contribution -0.558 -0.408 -0.536 0.875 sum 0.107 -17.050 20.481 26.649 Atomic orbital electron populations 1.20412 0.83533 1.05311 1.04464 1.24384 0.96661 0.82676 0.95577 1.70318 1.01206 1.29556 1.24710 1.23237 0.92675 0.89702 0.97606 1.19970 0.93735 0.98776 0.96563 1.20248 0.80107 0.78946 0.90591 1.90767 1.51542 1.51018 1.46243 1.47881 1.32036 1.47108 1.07242 1.22049 0.96962 0.94726 0.88175 1.22514 1.01218 0.94343 1.02431 1.22124 0.96072 1.00673 0.81570 1.86439 1.80874 1.42075 1.19122 1.22253 0.96632 0.84368 0.93864 0.93049 1.20608 0.96210 0.91742 0.87627 1.42212 1.58731 1.28391 1.07611 1.19238 1.24860 1.07257 0.85371 0.91234 1.24732 1.00523 0.98183 0.97683 1.69681 1.36332 1.18999 1.33082 0.86187 0.77529 0.77424 0.85047 1.21830 1.21843 1.20818 1.22414 1.00443 1.00011 0.81227 1.77937 0.96840 1.12158 1.26602 1.47918 1.04211 1.10005 1.57956 0.71529 0.88983 0.88090 0.89828 0.86552 0.86006 0.91206 0.89915 0.89887 0.89603 0.89241 0.93422 0.95606 0.94893 0.77838 0.93656 0.89771 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.29 2.97 8.24 -155.70 -1.28 1.69 16 3 N -0.53 -7.33 11.19 -8.16 -0.09 -7.42 16 4 C 0.25 3.42 6.63 -156.85 -1.04 2.38 16 5 C -0.05 -0.52 4.66 -29.04 -0.14 -0.66 16 6 C 0.52 7.40 7.62 -10.99 -0.08 7.32 16 7 O -0.52 -9.96 15.46 5.55 0.09 -9.88 16 8 N -0.61 -7.69 2.19 -172.51 -0.38 -8.07 16 9 C 0.10 0.87 6.00 -3.20 -0.02 0.86 16 10 C -0.17 -1.57 5.79 -27.17 -0.16 -1.73 16 11 C 0.07 0.97 6.37 36.42 0.23 1.20 16 12 O -0.37 -6.74 9.18 -26.54 -0.24 -6.98 16 13 C 0.09 1.66 2.73 -25.81 -0.07 1.59 16 14 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.17 3.69 5.95 -4.04 -0.02 3.67 16 16 N -0.73 -20.00 5.49 -59.91 -0.33 -20.33 16 17 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -29.58 13.06 55.49 0.72 -28.86 16 21 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.08 1.24 4.86 -3.86 -0.02 1.22 16 26 N -0.31 -4.07 12.80 32.42 0.41 -3.65 16 27 N -0.48 -4.75 7.45 32.62 0.24 -4.51 16 28 H 0.44 2.52 8.96 -182.33 -1.63 0.89 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.12 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.12 1.05 7.41 -51.93 -0.38 0.67 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.50 5.88 -51.93 -0.31 0.19 16 36 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.65 7.40 -51.93 -0.38 0.26 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.39 11.37 7.53 -40.82 -0.31 11.06 16 43 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.08 1.13 8.11 -51.93 -0.42 0.70 16 45 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -40.57 370.58 -9.48 -50.04 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.00 Total: 5.98 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -2.47 Total: 9.76 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: 0.58 Total: -72.84 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.16 Total: -16.86 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -40.57 -9.48 -50.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200479329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.646 kcal (2) G-P(sol) polarization free energy of solvation -40.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds