Wall clock time and date at job start Fri Apr 10 2020 18:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47017 * 125.65081 * 180.02562 * 9 7 2 11 11 C 1.54316 * 107.27755 * 181.01992 * 10 9 7 12 12 H 1.09002 * 110.72494 * 140.54926 * 11 10 9 13 13 N 1.46501 * 110.72440 * 263.83142 * 11 10 9 14 14 C 1.34772 * 119.99712 * 273.54424 * 13 11 10 15 15 O 1.21284 * 120.00210 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99783 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.47240 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47003 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.46667 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.46966 * 179.97438 * 19 18 17 21 21 C 1.35350 * 126.91246 * 274.68756 * 20 19 18 22 22 N 1.33779 * 106.49255 * 179.90583 * 21 20 19 23 23 N 1.28634 * 108.88424 * 0.36632 * 22 21 20 24 24 N 1.28719 * 110.17936 * 359.76881 * 23 22 21 25 25 H 0.97005 * 125.86241 * 180.02562 * 24 23 22 26 26 C 1.55167 * 102.93981 * 22.19469 * 11 10 9 27 27 H 1.08997 * 111.00435 * 82.57031 * 26 11 10 28 28 O 1.42894 * 111.00312 * 206.38898 * 26 11 10 29 29 C 1.47426 * 125.64553 * 359.69111 * 9 7 2 30 30 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.87978 * 300.44199 * 10 9 7 32 32 H 1.09004 * 109.88095 * 61.44661 * 10 9 7 33 33 H 0.97004 * 119.99779 * 93.54505 * 13 11 10 34 34 H 1.09010 * 109.46740 * 299.99692 * 16 14 13 35 35 H 1.08997 * 109.47540 * 59.99516 * 16 14 13 36 36 H 1.08999 * 109.46792 * 299.99999 * 17 16 14 37 37 H 1.08995 * 109.46688 * 59.99512 * 17 16 14 38 38 H 1.08997 * 109.46823 * 299.99451 * 18 17 16 39 39 H 1.08997 * 109.46994 * 59.99913 * 18 17 16 40 40 H 1.08993 * 109.47332 * 299.99837 * 19 18 17 41 41 H 1.09007 * 109.47246 * 60.00342 * 19 18 17 42 42 H 1.08001 * 126.75362 * 0.03481 * 21 20 19 43 43 H 0.96707 * 113.99635 * 179.97438 * 28 26 11 44 44 H 1.08994 * 110.37088 * 274.74679 * 29 9 7 45 45 H 1.09000 * 110.36502 * 37.07908 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 1.9316 -3.7275 0.0054 11 6 0.7782 -4.7525 -0.0142 12 1 1.0208 -5.5938 -0.6633 13 7 0.4716 -5.2139 1.3421 14 6 1.1534 -6.2486 1.8720 15 8 2.0204 -6.7981 1.2260 16 6 0.8377 -6.7236 3.2669 17 6 1.7475 -7.9011 3.6229 18 6 1.4274 -8.3829 5.0394 19 6 2.3368 -9.5607 5.3950 20 6 2.0219 -10.0350 6.7905 21 6 2.5216 -9.5432 7.9483 22 7 1.9693 -10.2588 8.9345 23 7 1.1859 -11.1404 8.4209 24 7 1.1873 -11.0419 7.1375 25 1 0.6773 -11.5943 6.5246 26 6 -0.4045 -3.9336 -0.5959 27 1 -0.3597 -3.9020 -1.6845 28 8 -1.6576 -4.4581 -0.1526 29 6 -0.1416 -2.5330 0.0177 30 1 -0.4849 0.8401 0.0004 31 1 2.5542 -3.8531 -0.8805 32 1 2.5343 -3.8612 0.9038 33 1 -0.2221 -4.7746 1.8586 34 1 1.0023 -5.9101 3.9737 35 1 -0.2036 -7.0419 3.3155 36 1 1.5825 -8.7143 2.9161 37 1 2.7889 -7.5831 3.5743 38 1 1.5927 -7.5695 5.7458 39 1 0.3859 -8.7006 5.0883 40 1 2.1711 -10.3740 4.6885 41 1 3.3784 -9.2433 5.3460 42 1 3.2258 -8.7314 8.0550 43 1 -2.4264 -3.9783 -0.4903 44 1 -0.5184 -2.4869 1.0394 45 1 -0.6047 -1.7586 -0.5938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220068803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:54 Heat of formation + Delta-G solvation = 20.350263 kcal Electronic energy + Delta-G solvation = -26560.165482 eV Core-core repulsion = 22615.113093 eV Total energy + Delta-G solvation = -3945.052389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.64305 -39.74579 -37.93111 -36.18074 -35.12820 -33.77090 -33.70095 -32.66034 -31.66927 -29.55254 -28.36782 -27.13592 -25.36129 -24.35336 -23.32041 -22.33228 -21.51640 -20.54496 -20.34958 -19.73935 -18.55950 -17.26552 -17.00663 -16.58753 -16.32899 -16.14288 -15.64995 -15.01898 -14.94034 -14.72817 -14.44379 -14.06588 -13.90018 -13.30293 -12.99462 -12.92655 -12.85915 -12.44993 -12.37235 -12.22269 -11.87703 -11.59616 -11.48117 -11.37147 -11.16739 -11.16288 -10.99383 -10.94060 -10.89382 -10.83492 -10.26619 -10.11706 -9.90520 -9.59720 -9.44271 -9.25709 -8.80320 -8.61142 -6.96988 -5.77098 -3.19354 1.18547 2.20879 2.36827 2.90856 3.34588 3.39001 3.39990 3.44726 4.03008 4.26486 4.34902 4.51728 4.54481 4.56471 4.80408 4.84695 5.00570 5.12191 5.17657 5.21587 5.25782 5.33954 5.43859 5.49570 5.52977 5.59628 5.64396 5.66269 5.78726 5.81336 5.99002 6.09859 6.12925 6.19628 6.44852 6.46778 6.60229 6.96304 7.21688 7.48495 7.65798 7.87808 7.99667 8.09196 8.20867 8.53560 9.09470 9.69969 10.32528 11.26803 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.002056 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.970655 B =13613.112009 C =14375.776804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.127 3.873 11 C 0.144 3.856 12 H 0.089 0.911 13 N -0.699 5.699 14 C 0.510 3.490 15 O -0.554 6.554 16 C -0.141 4.141 17 C -0.102 4.102 18 C -0.116 4.116 19 C -0.050 4.050 20 C -0.003 4.003 21 C -0.049 4.049 22 N -0.266 5.266 23 N -0.087 5.087 24 N -0.391 5.391 25 H 0.447 0.553 26 C 0.062 3.938 27 H 0.071 0.929 28 O -0.567 6.567 29 C 0.128 3.872 30 H 0.253 0.747 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.405 0.595 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.191 0.809 43 H 0.378 0.622 44 H 0.020 0.980 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.389 -17.960 7.315 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.000 4.000 11 C 0.038 3.962 12 H 0.107 0.893 13 N -0.349 5.349 14 C 0.297 3.703 15 O -0.432 6.432 16 C -0.181 4.181 17 C -0.140 4.140 18 C -0.154 4.154 19 C -0.089 4.089 20 C -0.137 4.137 21 C -0.206 4.206 22 N -0.133 5.133 23 N -0.067 5.067 24 N -0.112 5.112 25 H 0.292 0.708 26 C 0.002 3.998 27 H 0.088 0.912 28 O -0.371 6.371 29 C 0.002 3.998 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.240 0.760 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.208 0.792 43 H 0.226 0.774 44 H 0.038 0.962 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.919 -19.224 8.498 21.038 hybrid contribution -0.162 1.792 -1.320 2.231 sum -1.082 -17.432 7.178 18.883 Atomic orbital electron populations 1.69723 1.04923 1.25042 1.57687 1.24793 0.95792 0.97835 1.02247 0.86100 0.78395 0.82710 0.77994 1.21052 1.21534 1.21155 1.19059 0.90581 0.82210 1.43171 0.90313 1.44336 1.01458 0.99888 1.87091 1.21741 0.93769 0.85447 0.99057 1.21968 0.94764 0.96199 0.83231 0.89308 1.45734 1.39190 1.33446 1.16578 1.20596 0.81463 0.79685 0.88581 1.90668 1.32502 1.57270 1.62797 1.21650 1.01847 0.99971 0.94602 1.21309 1.00321 0.97295 0.95074 1.21642 0.99070 0.97204 0.97532 1.20235 1.02071 0.98749 0.87880 1.22425 0.97813 0.93958 0.99523 1.23472 1.05222 1.04085 0.87821 1.75109 1.07059 1.03674 1.27485 1.78300 1.18926 1.19712 0.89761 1.45149 1.32524 1.25605 1.07918 0.70762 1.23765 0.82384 0.96119 0.97530 0.91155 1.86324 1.15628 1.59056 1.76120 1.22613 0.85615 0.92523 0.99013 0.93589 0.94708 0.95053 0.76002 0.88865 0.89152 0.91083 0.90693 0.90909 0.91870 0.90149 0.88321 0.79179 0.77447 0.96187 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.66 10.08 55.49 0.56 -25.10 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.00 10.27 -15.06 -0.15 -6.15 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.72 3.39 -169.92 -0.58 -15.30 16 10 C 0.13 2.67 6.98 -3.07 -0.02 2.65 16 11 C 0.14 2.59 3.13 -66.09 -0.21 2.38 16 12 H 0.09 1.59 7.70 -51.93 -0.40 1.19 16 13 N -0.70 -11.10 4.78 -52.03 -0.25 -11.35 16 14 C 0.51 7.59 7.83 -10.99 -0.09 7.50 16 15 O -0.55 -9.99 15.71 5.55 0.09 -9.90 16 16 C -0.14 -1.40 5.70 -27.88 -0.16 -1.56 16 17 C -0.10 -0.86 4.50 -26.73 -0.12 -0.98 16 18 C -0.12 -0.68 5.20 -26.73 -0.14 -0.82 16 19 C -0.05 -0.24 5.78 -27.88 -0.16 -0.40 16 20 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 21 C -0.05 -0.41 11.99 -17.73 -0.21 -0.63 16 22 N -0.27 -3.05 12.41 30.24 0.38 -2.67 16 23 N -0.09 -0.91 13.38 60.35 0.81 -0.10 16 24 N -0.39 -2.65 6.98 33.54 0.23 -2.41 16 25 H 0.45 1.39 8.96 -190.39 -1.71 -0.32 16 26 C 0.06 1.11 4.23 -24.44 -0.10 1.00 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 O -0.57 -8.57 12.63 -35.23 -0.45 -9.02 16 29 C 0.13 2.85 5.62 -2.39 -0.01 2.84 16 30 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.69 8.05 -51.93 -0.42 0.28 16 33 H 0.41 6.10 8.20 -40.82 -0.33 5.77 16 34 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.38 4.35 9.12 45.56 0.42 4.76 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.11 2.78 5.85 -51.93 -0.30 2.48 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -34.45 375.07 -7.95 -42.41 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.36 Total: 6.49 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -2.01 Total: 4.87 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 1.15 Total: -56.93 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.36 Total: -18.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.45 -7.95 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220068803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.758 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds