Wall clock time and date at job start Fri Apr 10 2020 18:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47017 * 125.65081 * 180.02562 * 9 7 2 11 11 C 1.54316 * 107.27755 * 181.01992 * 10 9 7 12 12 H 1.09002 * 110.72494 * 140.54926 * 11 10 9 13 13 N 1.46501 * 110.72440 * 263.83142 * 11 10 9 14 14 C 1.34772 * 119.99712 * 273.54424 * 13 11 10 15 15 O 1.21284 * 120.00210 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99783 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.47240 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47003 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.46667 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.46966 * 179.97438 * 19 18 17 21 21 C 1.35350 * 126.91246 * 274.68756 * 20 19 18 22 22 N 1.33779 * 106.49255 * 179.90583 * 21 20 19 23 23 N 1.28634 * 108.88424 * 0.36632 * 22 21 20 24 24 N 1.28719 * 110.17936 * 359.76881 * 23 22 21 25 25 H 0.97005 * 125.86241 * 180.02562 * 24 23 22 26 26 C 1.55167 * 102.93981 * 22.19469 * 11 10 9 27 27 H 1.08997 * 111.00435 * 82.57031 * 26 11 10 28 28 O 1.42894 * 111.00312 * 206.38898 * 26 11 10 29 29 C 1.47426 * 125.64553 * 359.69111 * 9 7 2 30 30 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.87978 * 300.44199 * 10 9 7 32 32 H 1.09004 * 109.88095 * 61.44661 * 10 9 7 33 33 H 0.97004 * 119.99779 * 93.54505 * 13 11 10 34 34 H 1.09010 * 109.46740 * 299.99692 * 16 14 13 35 35 H 1.08997 * 109.47540 * 59.99516 * 16 14 13 36 36 H 1.08999 * 109.46792 * 299.99999 * 17 16 14 37 37 H 1.08995 * 109.46688 * 59.99512 * 17 16 14 38 38 H 1.08997 * 109.46823 * 299.99451 * 18 17 16 39 39 H 1.08997 * 109.46994 * 59.99913 * 18 17 16 40 40 H 1.08993 * 109.47332 * 299.99837 * 19 18 17 41 41 H 1.09007 * 109.47246 * 60.00342 * 19 18 17 42 42 H 1.08001 * 126.75362 * 0.03481 * 21 20 19 43 43 H 0.96707 * 113.99635 * 179.97438 * 28 26 11 44 44 H 1.08994 * 110.37088 * 274.74679 * 29 9 7 45 45 H 1.09000 * 110.36502 * 37.07908 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 1.9316 -3.7275 0.0054 11 6 0.7782 -4.7525 -0.0142 12 1 1.0208 -5.5938 -0.6633 13 7 0.4716 -5.2139 1.3421 14 6 1.1534 -6.2486 1.8720 15 8 2.0204 -6.7981 1.2260 16 6 0.8377 -6.7236 3.2669 17 6 1.7475 -7.9011 3.6229 18 6 1.4274 -8.3829 5.0394 19 6 2.3368 -9.5607 5.3950 20 6 2.0219 -10.0350 6.7905 21 6 2.5216 -9.5432 7.9483 22 7 1.9693 -10.2588 8.9345 23 7 1.1859 -11.1404 8.4209 24 7 1.1873 -11.0419 7.1375 25 1 0.6773 -11.5943 6.5246 26 6 -0.4045 -3.9336 -0.5959 27 1 -0.3597 -3.9020 -1.6845 28 8 -1.6576 -4.4581 -0.1526 29 6 -0.1416 -2.5330 0.0177 30 1 -0.4849 0.8401 0.0004 31 1 2.5542 -3.8531 -0.8805 32 1 2.5343 -3.8612 0.9038 33 1 -0.2221 -4.7746 1.8586 34 1 1.0023 -5.9101 3.9737 35 1 -0.2036 -7.0419 3.3155 36 1 1.5825 -8.7143 2.9161 37 1 2.7889 -7.5831 3.5743 38 1 1.5927 -7.5695 5.7458 39 1 0.3859 -8.7006 5.0883 40 1 2.1711 -10.3740 4.6885 41 1 3.3784 -9.2433 5.3460 42 1 3.2258 -8.7314 8.0550 43 1 -2.4264 -3.9783 -0.4903 44 1 -0.5184 -2.4869 1.0394 45 1 -0.6047 -1.7586 -0.5938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220068803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:54 Heat of formation + Delta-G solvation = -7.124001 kcal Electronic energy + Delta-G solvation = -26561.356855 eV Core-core repulsion = 22615.113093 eV Total energy + Delta-G solvation = -3946.243762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.25712 -41.04182 -39.35128 -36.80851 -36.62695 -35.27164 -34.35731 -33.63217 -33.16223 -30.60548 -29.74848 -28.72614 -26.56945 -25.74228 -23.97332 -23.07079 -22.30480 -22.10096 -21.49397 -21.11536 -19.16060 -19.01360 -18.35640 -17.85027 -17.15642 -17.00854 -16.89650 -16.59890 -15.84732 -15.65581 -15.43818 -15.20223 -15.05862 -14.74365 -14.51457 -14.21887 -13.88218 -13.66034 -13.53227 -13.17936 -13.03189 -12.83681 -12.73560 -12.70216 -12.53081 -12.22866 -12.08632 -12.06813 -11.94127 -11.79045 -11.61402 -11.57618 -11.39756 -10.85675 -10.77918 -10.74000 -10.09441 -9.99492 -8.94057 -7.80821 -5.25889 0.60599 1.47737 1.49665 1.55558 1.56124 1.74412 1.91707 2.28054 2.47384 3.11743 3.29853 3.51762 3.68935 3.74838 3.79997 3.91607 4.00321 4.02074 4.06591 4.20755 4.32877 4.41003 4.52459 4.54996 4.60319 4.66711 4.69934 4.82677 4.87595 4.88842 5.00006 5.01678 5.15267 5.24055 5.40345 5.40965 5.45857 5.51363 5.60413 5.72529 6.02578 6.24570 6.66680 6.87067 7.07308 7.34495 7.45062 7.71853 8.33937 9.19842 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.002056 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.970655 B =13613.112009 C =14375.776804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.618 5.618 10 C 0.127 3.873 11 C 0.152 3.848 12 H 0.094 0.906 13 N -0.701 5.701 14 C 0.505 3.495 15 O -0.587 6.587 16 C -0.134 4.134 17 C -0.096 4.096 18 C -0.107 4.107 19 C -0.044 4.044 20 C 0.013 3.987 21 C -0.064 4.064 22 N -0.306 5.306 23 N -0.118 5.118 24 N -0.376 5.376 25 H 0.462 0.538 26 C 0.086 3.914 27 H 0.080 0.920 28 O -0.560 6.560 29 C 0.135 3.865 30 H 0.249 0.751 31 H 0.034 0.966 32 H 0.018 0.982 33 H 0.410 0.590 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.210 0.790 43 H 0.397 0.603 44 H 0.001 0.999 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -18.768 7.215 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.095 0.905 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.046 3.954 12 H 0.112 0.888 13 N -0.351 5.351 14 C 0.294 3.706 15 O -0.468 6.468 16 C -0.174 4.174 17 C -0.134 4.134 18 C -0.145 4.145 19 C -0.084 4.084 20 C -0.123 4.123 21 C -0.221 4.221 22 N -0.172 5.172 23 N -0.098 5.098 24 N -0.100 5.100 25 H 0.311 0.689 26 C 0.025 3.975 27 H 0.098 0.902 28 O -0.367 6.367 29 C 0.010 3.990 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.245 0.755 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.226 0.774 43 H 0.247 0.753 44 H 0.019 0.981 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.266 -20.073 8.408 21.800 hybrid contribution -0.063 2.040 -1.340 2.441 sum -1.329 -18.033 7.068 19.415 Atomic orbital electron populations 1.69950 1.05906 1.25278 1.58191 1.25565 0.96728 1.00712 1.02353 0.85137 0.77190 0.78804 0.78085 1.20365 1.21697 1.20748 1.19361 0.90932 0.83587 1.43189 0.90520 1.44567 1.02569 1.00464 1.86973 1.21803 0.94881 0.84992 0.98237 1.21731 0.93547 0.95347 0.84802 0.88760 1.45775 1.39573 1.33880 1.15868 1.21497 0.80362 0.78680 0.90056 1.90651 1.33870 1.58190 1.64107 1.21728 1.03572 1.00834 0.91217 1.21250 0.99193 0.96496 0.96498 1.21534 0.99752 0.97524 0.95715 1.20274 1.02323 0.98901 0.86862 1.22641 0.96687 0.93098 0.99837 1.23942 1.05699 1.04575 0.87918 1.75062 1.08237 1.04799 1.29138 1.78231 1.19882 1.20430 0.91242 1.45182 1.32032 1.25443 1.07297 0.68941 1.23335 0.83581 0.92991 0.97550 0.90226 1.86299 1.15358 1.58833 1.76210 1.22408 0.84339 0.94647 0.97617 0.94086 0.94817 0.96382 0.75457 0.87677 0.86751 0.91493 0.92024 0.90823 0.90990 0.88439 0.87474 0.77370 0.75284 0.98141 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.98 10.08 21.65 0.22 -52.77 16 2 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 3 Si 0.98 44.18 29.55 68.60 2.03 46.21 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.24 -13.21 10.27 84.03 0.86 -12.34 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.62 -30.64 3.39 -691.51 -2.35 -32.98 16 10 C 0.13 5.38 6.98 86.73 0.60 5.98 16 11 C 0.15 5.32 3.13 46.18 0.14 5.46 16 12 H 0.09 3.25 7.70 -2.39 -0.02 3.23 16 13 N -0.70 -21.29 4.78 -436.91 -2.09 -23.38 16 14 C 0.51 14.25 7.83 87.66 0.69 14.94 16 15 O -0.59 -20.62 15.71 -3.04 -0.05 -20.67 16 16 C -0.13 -2.32 5.70 29.85 0.17 -2.15 16 17 C -0.10 -1.38 4.50 30.59 0.14 -1.25 16 18 C -0.11 -0.93 5.20 30.59 0.16 -0.77 16 19 C -0.04 -0.30 5.78 29.85 0.17 -0.12 16 20 C 0.01 0.14 6.56 41.36 0.27 0.41 16 21 C -0.06 -1.00 11.99 83.73 1.00 0.01 16 22 N -0.31 -6.92 12.41 -58.25 -0.72 -7.65 16 23 N -0.12 -2.41 13.38 37.02 0.50 -1.91 16 24 N -0.38 -4.47 6.98 -47.79 -0.33 -4.81 16 25 H 0.46 1.93 8.96 -219.95 -1.97 -0.04 16 26 C 0.09 2.95 4.23 32.08 0.14 3.09 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 28 O -0.56 -15.69 12.63 -148.98 -1.88 -17.57 16 29 C 0.14 6.07 5.62 86.94 0.49 6.56 16 30 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.02 0.81 8.05 -2.38 -0.02 0.79 16 33 H 0.41 11.70 8.20 -92.71 -0.76 10.94 16 34 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 37 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.21 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.40 8.15 9.12 -74.05 -0.68 7.48 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.08 4.21 5.85 -2.39 -0.01 4.20 16 Total: -1.00 -75.42 375.07 -1.74 -77.16 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -2.37 Total: 21.38 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 5.30 Total: 16.98 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -4.78 Total: -123.50 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.93 Total: -38.24 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -75.42 -1.74 -77.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220068803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.040 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds