Wall clock time and date at job start Fri Apr 10 2020 18:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00044 * 2 1 4 4 C 1.34777 * 119.99544 * 179.97438 * 2 1 3 5 5 O 1.21284 * 120.00668 * 0.02562 * 4 2 1 6 6 C 1.50701 * 119.99761 * 179.97438 * 4 2 1 7 7 N 1.46501 * 109.47448 * 180.02562 * 6 4 2 8 8 C 1.34773 * 120.00349 * 179.97438 * 7 6 4 9 9 O 1.21286 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.50695 * 120.00235 * 179.97438 * 8 7 6 11 11 C 1.52500 * 119.24612 * 134.61076 * 10 8 7 12 12 C 1.52942 * 60.44453 * 111.04021 * 11 10 8 13 13 H 1.09001 * 119.50365 * 246.61297 * 12 11 10 14 14 C 1.54574 * 118.19945 * 91.48268 * 12 11 10 15 15 C 1.54941 * 102.85946 * 274.57515 * 14 12 11 16 16 N 1.47527 * 117.37150 * 339.71538 * 10 8 7 17 17 C 1.34776 * 127.04653 * 64.92931 * 16 10 8 18 18 O 1.21277 * 120.00211 * 359.71118 * 17 16 10 19 19 C 1.50701 * 119.99977 * 179.71238 * 17 16 10 20 20 C 1.50694 * 109.47169 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00179 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00472 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99350 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00608 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00340 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00090 * 24 22 20 27 27 H 1.48498 * 109.47210 * 149.99801 * 24 22 20 28 28 H 1.09000 * 109.47288 * 239.99878 * 1 2 3 29 29 H 1.09000 * 109.46864 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47281 * 120.00532 * 1 2 3 31 31 H 1.09003 * 109.46969 * 269.99385 * 3 2 1 32 32 H 1.08995 * 109.47414 * 29.99856 * 3 2 1 33 33 H 1.09000 * 109.46854 * 150.00219 * 3 2 1 34 34 H 1.09004 * 109.47142 * 60.00275 * 6 4 2 35 35 H 1.09003 * 109.47424 * 300.00083 * 6 4 2 36 36 H 0.96997 * 119.99702 * 0.02562 * 7 6 4 37 37 H 1.08992 * 117.56422 * 3.46609 * 11 10 8 38 38 H 1.09003 * 117.31772 * 218.70979 * 11 10 8 39 39 H 1.08996 * 110.73549 * 156.23422 * 14 12 11 40 40 H 1.08997 * 110.73696 * 32.91437 * 14 12 11 41 41 H 1.09004 * 110.66137 * 278.98860 * 15 14 12 42 42 H 1.09008 * 110.80175 * 155.94355 * 15 14 12 43 43 H 1.09005 * 109.46995 * 60.00572 * 19 17 16 44 44 H 1.08998 * 109.47477 * 300.00192 * 19 17 16 45 45 H 0.97005 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6458 -1.1673 -0.0001 7 7 4.1342 -2.5485 0.0001 8 6 5.4592 -2.7949 -0.0009 9 8 6.2474 -1.8730 -0.0014 10 6 5.9615 -4.2156 -0.0002 11 6 7.0901 -4.6073 -0.9482 12 6 7.3505 -4.5656 0.5583 13 1 8.0350 -3.8207 0.9644 14 6 7.1388 -5.8624 1.3724 15 6 5.6229 -5.8259 1.6911 16 7 5.0295 -5.2643 0.4557 17 6 3.8770 -5.6387 -0.1343 18 8 3.5092 -5.0884 -1.1505 19 6 3.0452 -6.7412 0.4688 20 6 1.8181 -6.9647 -0.3769 21 1 1.6565 -6.3679 -1.2624 22 6 0.9012 -7.9305 -0.0198 23 7 1.0978 -8.6570 1.0587 24 14 -0.6202 -8.2072 -1.0677 25 1 -1.7207 -7.3362 -0.5824 26 1 -0.3137 -7.8755 -2.4824 27 1 -1.0356 -9.6296 -0.9716 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 2.3793 1.5832 -1.0277 32 1 1.6085 2.0283 0.5138 33 1 3.1499 1.1383 0.5138 34 1 4.0095 -0.6529 0.8895 35 1 4.0089 -0.6541 -0.8905 36 1 3.5038 -3.2858 0.0001 37 1 7.5337 -3.8196 -1.5569 38 1 7.0289 -5.5878 -1.4205 39 1 7.7266 -5.8424 2.2901 40 1 7.3861 -6.7388 0.7734 41 1 5.4246 -5.1755 2.5431 42 1 5.2424 -6.8300 1.8786 43 1 2.7448 -6.4592 1.4780 44 1 3.6316 -7.6592 0.5074 45 1 0.4525 -9.3362 1.3102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:03 Heat of formation + Delta-G solvation = -56.928861 kcal Electronic energy + Delta-G solvation = -28554.755085 eV Core-core repulsion = 24574.058871 eV Total energy + Delta-G solvation = -3980.696214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85923 -39.92788 -38.41419 -37.43214 -35.73988 -34.33409 -33.05047 -32.62976 -30.40172 -29.34315 -28.74395 -27.56979 -25.70515 -24.24285 -23.34046 -22.82189 -20.97011 -19.98365 -19.72464 -18.89083 -17.15416 -16.80090 -16.43370 -16.28994 -16.08915 -15.79412 -15.41020 -15.06936 -14.80447 -14.47245 -14.20093 -13.96832 -13.55717 -13.38842 -13.20681 -13.07526 -12.91906 -12.87361 -12.63831 -12.37445 -12.29906 -12.12676 -12.05085 -11.72218 -11.22123 -11.05915 -10.77528 -10.64852 -10.63628 -10.28529 -9.95054 -9.92883 -9.72266 -9.23166 -9.01841 -8.86966 -8.74303 -8.41091 -8.23547 -6.03419 -4.02122 2.47973 2.55969 2.65241 3.24918 3.34903 3.38301 3.43119 3.51608 3.54670 3.76036 4.30546 4.51183 4.58596 4.61973 4.77207 4.86667 5.01784 5.08506 5.12209 5.17541 5.23288 5.24379 5.34935 5.37507 5.37877 5.47537 5.65460 5.70569 5.74723 5.78755 5.89579 5.95896 6.01435 6.23290 6.27492 6.43444 6.68384 7.10545 7.16303 7.30454 7.72620 7.97092 7.99888 8.03360 8.31584 8.35056 9.06415 9.10835 9.62523 11.09013 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007975 B = 0.005645 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.974599 B = 4959.371440 C = 7935.911757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.624 5.624 3 C 0.075 3.925 4 C 0.499 3.501 5 O -0.504 6.504 6 C 0.104 3.896 7 N -0.705 5.705 8 C 0.564 3.436 9 O -0.555 6.555 10 C 0.047 3.953 11 C -0.121 4.121 12 C -0.125 4.125 13 H 0.129 0.871 14 C -0.109 4.109 15 C 0.105 3.895 16 N -0.608 5.608 17 C 0.530 3.470 18 O -0.526 6.526 19 C 0.015 3.985 20 C -0.505 4.505 21 H 0.076 0.924 22 C 0.056 3.944 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.272 1.272 27 H -0.287 1.287 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.424 0.576 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.133 16.038 2.554 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.360 5.360 3 C -0.068 4.068 4 C 0.285 3.715 5 O -0.378 6.378 6 C -0.024 4.024 7 N -0.363 5.363 8 C 0.350 3.650 9 O -0.434 6.434 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.144 4.144 13 H 0.147 0.853 14 C -0.147 4.147 15 C -0.017 4.017 16 N -0.346 5.346 17 C 0.323 3.677 18 O -0.401 6.401 19 C -0.024 4.024 20 C -0.543 4.543 21 H 0.094 0.906 22 C -0.144 4.144 23 N -0.541 5.541 24 Si 0.729 3.271 25 H -0.206 1.206 26 H -0.197 1.197 27 H -0.213 1.213 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.268 0.732 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.843 16.212 2.052 18.581 hybrid contribution -1.213 -0.299 -0.421 1.319 sum 7.630 15.913 1.631 17.723 Atomic orbital electron populations 1.21643 0.78553 1.02094 1.02931 1.47670 1.07304 1.06062 1.75000 1.21899 0.97473 0.85216 1.02214 1.20619 0.90040 0.83785 0.77052 1.90882 1.69466 1.30354 1.47076 1.21044 0.91007 0.86169 1.04149 1.45944 1.08069 1.08472 1.73856 1.19379 0.81806 0.88920 0.74936 1.90653 1.55815 1.44951 1.51934 1.21261 0.86834 0.87240 1.08963 1.23325 0.96643 1.03798 0.92199 1.23609 0.95177 0.99872 0.95766 0.85298 1.22478 0.96109 0.96125 0.99946 1.22653 0.91591 1.00414 0.87086 1.48998 1.22020 1.36796 1.26815 1.22139 0.77868 0.84201 0.83446 1.90582 1.69410 1.55608 1.24461 1.19233 0.94446 0.90848 0.97898 1.21147 1.04062 1.18556 1.10540 0.90605 1.24969 0.98414 0.95696 0.95369 1.69957 1.36510 1.22932 1.24719 0.86428 0.82814 0.76933 0.80928 1.20599 1.19688 1.21321 0.91844 0.90678 0.91822 0.92248 0.90701 0.90729 0.88645 0.88618 0.73229 0.87108 0.87637 0.89434 0.90080 0.91239 0.88593 0.93350 0.93315 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.16 59.85 0.61 1.55 16 2 N -0.62 -7.21 3.27 -189.52 -0.62 -7.83 16 3 C 0.08 0.52 10.21 59.84 0.61 1.13 16 4 C 0.50 7.89 7.74 -10.99 -0.09 7.80 16 5 O -0.50 -10.72 15.67 5.55 0.09 -10.63 16 6 C 0.10 1.51 4.71 -5.19 -0.02 1.49 16 7 N -0.71 -13.08 5.41 -61.47 -0.33 -13.41 16 8 C 0.56 10.16 7.65 -10.99 -0.08 10.08 16 9 O -0.55 -10.14 16.84 5.55 0.09 -10.05 16 10 C 0.05 0.79 2.48 -132.28 -0.33 0.46 16 11 C -0.12 -1.70 9.94 -27.02 -0.27 -1.97 16 12 C -0.12 -1.58 6.76 -89.43 -0.60 -2.18 16 13 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 14 C -0.11 -1.21 6.86 -24.88 -0.17 -1.38 16 15 C 0.11 1.50 6.95 -2.13 -0.01 1.49 16 16 N -0.61 -11.18 3.03 -156.74 -0.47 -11.65 16 17 C 0.53 12.34 6.77 -10.99 -0.07 12.26 16 18 O -0.53 -13.80 14.15 5.56 0.08 -13.72 16 19 C 0.01 0.38 4.39 -29.04 -0.13 0.25 16 20 C -0.50 -14.87 8.92 -34.44 -0.31 -15.17 16 21 H 0.08 2.35 6.75 -52.49 -0.35 2.00 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 24 Si 0.90 22.70 29.54 -169.99 -5.02 17.68 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 33 H 0.07 0.47 6.44 -51.93 -0.33 0.13 16 34 H 0.10 1.17 7.40 -51.93 -0.38 0.78 16 35 H 0.10 1.25 8.11 -51.93 -0.42 0.82 16 36 H 0.42 9.19 4.12 -40.82 -0.17 9.02 16 37 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.38 7.23 -51.92 -0.38 1.01 16 43 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 1.25 7.91 -51.93 -0.41 0.84 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -37.33 374.93 -7.40 -44.72 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.63 Total: 7.71 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: -0.97 Total: 17.35 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.69 Total: -58.72 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: 0.26 Total: -34.40 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.33 -7.40 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.204 kcal (2) G-P(sol) polarization free energy of solvation -37.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds