Wall clock time and date at job start Fri Apr 10 2020 18:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00044 * 2 1 4 4 C 1.34777 * 119.99544 * 179.97438 * 2 1 3 5 5 O 1.21284 * 120.00668 * 0.02562 * 4 2 1 6 6 C 1.50701 * 119.99761 * 179.97438 * 4 2 1 7 7 N 1.46501 * 109.47448 * 180.02562 * 6 4 2 8 8 C 1.34773 * 120.00349 * 179.97438 * 7 6 4 9 9 O 1.21286 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.50695 * 120.00235 * 179.97438 * 8 7 6 11 11 C 1.52500 * 119.24612 * 134.61076 * 10 8 7 12 12 C 1.52942 * 60.44453 * 111.04021 * 11 10 8 13 13 H 1.09001 * 119.50365 * 246.61297 * 12 11 10 14 14 C 1.54574 * 118.19945 * 91.48268 * 12 11 10 15 15 C 1.54941 * 102.85946 * 274.57515 * 14 12 11 16 16 N 1.47527 * 117.37150 * 339.71538 * 10 8 7 17 17 C 1.34776 * 127.04653 * 64.92931 * 16 10 8 18 18 O 1.21277 * 120.00211 * 359.71118 * 17 16 10 19 19 C 1.50701 * 119.99977 * 179.71238 * 17 16 10 20 20 C 1.50694 * 109.47169 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00179 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00472 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99350 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00608 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00340 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00090 * 24 22 20 27 27 H 1.48498 * 109.47210 * 149.99801 * 24 22 20 28 28 H 1.09000 * 109.47288 * 239.99878 * 1 2 3 29 29 H 1.09000 * 109.46864 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47281 * 120.00532 * 1 2 3 31 31 H 1.09003 * 109.46969 * 269.99385 * 3 2 1 32 32 H 1.08995 * 109.47414 * 29.99856 * 3 2 1 33 33 H 1.09000 * 109.46854 * 150.00219 * 3 2 1 34 34 H 1.09004 * 109.47142 * 60.00275 * 6 4 2 35 35 H 1.09003 * 109.47424 * 300.00083 * 6 4 2 36 36 H 0.96997 * 119.99702 * 0.02562 * 7 6 4 37 37 H 1.08992 * 117.56422 * 3.46609 * 11 10 8 38 38 H 1.09003 * 117.31772 * 218.70979 * 11 10 8 39 39 H 1.08996 * 110.73549 * 156.23422 * 14 12 11 40 40 H 1.08997 * 110.73696 * 32.91437 * 14 12 11 41 41 H 1.09004 * 110.66137 * 278.98860 * 15 14 12 42 42 H 1.09008 * 110.80175 * 155.94355 * 15 14 12 43 43 H 1.09005 * 109.46995 * 60.00572 * 19 17 16 44 44 H 1.08998 * 109.47477 * 300.00192 * 19 17 16 45 45 H 0.97005 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6458 -1.1673 -0.0001 7 7 4.1342 -2.5485 0.0001 8 6 5.4592 -2.7949 -0.0009 9 8 6.2474 -1.8730 -0.0014 10 6 5.9615 -4.2156 -0.0002 11 6 7.0901 -4.6073 -0.9482 12 6 7.3505 -4.5656 0.5583 13 1 8.0350 -3.8207 0.9644 14 6 7.1388 -5.8624 1.3724 15 6 5.6229 -5.8259 1.6911 16 7 5.0295 -5.2643 0.4557 17 6 3.8770 -5.6387 -0.1343 18 8 3.5092 -5.0884 -1.1505 19 6 3.0452 -6.7412 0.4688 20 6 1.8181 -6.9647 -0.3769 21 1 1.6565 -6.3679 -1.2624 22 6 0.9012 -7.9305 -0.0198 23 7 1.0978 -8.6570 1.0587 24 14 -0.6202 -8.2072 -1.0677 25 1 -1.7207 -7.3362 -0.5824 26 1 -0.3137 -7.8755 -2.4824 27 1 -1.0356 -9.6296 -0.9716 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 2.3793 1.5832 -1.0277 32 1 1.6085 2.0283 0.5138 33 1 3.1499 1.1383 0.5138 34 1 4.0095 -0.6529 0.8895 35 1 4.0089 -0.6541 -0.8905 36 1 3.5038 -3.2858 0.0001 37 1 7.5337 -3.8196 -1.5569 38 1 7.0289 -5.5878 -1.4205 39 1 7.7266 -5.8424 2.2901 40 1 7.3861 -6.7388 0.7734 41 1 5.4246 -5.1755 2.5431 42 1 5.2424 -6.8300 1.8786 43 1 2.7448 -6.4592 1.4780 44 1 3.6316 -7.6592 0.5074 45 1 0.4525 -9.3362 1.3102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:02 Heat of formation + Delta-G solvation = -85.053341 kcal Electronic energy + Delta-G solvation = -28555.974654 eV Core-core repulsion = 24574.058871 eV Total energy + Delta-G solvation = -3981.915783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16719 -41.12385 -39.90844 -38.95082 -36.80926 -35.67431 -35.15492 -34.13947 -31.57673 -30.94087 -30.26351 -28.43186 -26.77974 -26.04014 -24.57587 -24.27164 -22.24257 -21.23753 -20.95962 -20.12305 -18.75013 -18.33867 -18.02677 -17.49055 -17.37158 -17.15688 -16.90199 -16.60746 -16.09106 -16.00154 -15.74617 -15.43608 -14.85602 -14.64470 -14.36166 -14.25998 -14.14008 -13.99866 -13.75134 -13.61659 -13.57868 -13.41877 -13.22610 -12.94683 -12.84683 -12.75899 -12.63011 -12.15540 -12.05462 -11.81097 -11.57588 -11.40694 -11.21706 -10.93637 -10.64738 -10.57543 -10.33117 -9.84707 -9.68558 -8.27576 -6.33499 1.21118 1.33297 1.35291 1.37339 1.49042 1.60756 1.75301 1.84883 2.19048 2.40363 2.56545 3.07707 3.27550 3.47025 3.48059 3.65103 3.92559 4.06215 4.11278 4.16404 4.23633 4.26855 4.34660 4.35720 4.41881 4.56254 4.69509 4.70021 4.74259 4.83829 4.86950 4.88585 4.99607 5.04961 5.11678 5.20504 5.25140 5.36783 5.40148 5.71674 6.01708 6.10725 6.27870 6.52073 6.78202 6.88437 6.94058 7.29501 7.38373 8.84643 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007975 B = 0.005645 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.974599 B = 4959.371440 C = 7935.911757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.614 5.614 3 C 0.066 3.934 4 C 0.491 3.509 5 O -0.574 6.574 6 C 0.103 3.897 7 N -0.722 5.722 8 C 0.560 3.440 9 O -0.561 6.561 10 C 0.003 3.997 11 C -0.119 4.119 12 C -0.086 4.086 13 H 0.154 0.846 14 C -0.096 4.096 15 C 0.093 3.907 16 N -0.601 5.601 17 C 0.532 3.468 18 O -0.566 6.566 19 C 0.023 3.977 20 C -0.533 4.533 21 H 0.050 0.950 22 C 0.014 3.986 23 N -0.921 5.921 24 Si 0.959 3.041 25 H -0.276 1.276 26 H -0.276 1.276 27 H -0.268 1.268 28 H 0.048 0.952 29 H 0.121 0.879 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.409 0.591 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 17.515 3.304 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.348 5.348 3 C -0.076 4.076 4 C 0.279 3.721 5 O -0.454 6.454 6 C -0.023 4.023 7 N -0.377 5.377 8 C 0.346 3.654 9 O -0.441 6.441 10 C -0.087 4.087 11 C -0.157 4.157 12 C -0.105 4.105 13 H 0.171 0.829 14 C -0.134 4.134 15 C -0.028 4.028 16 N -0.337 5.337 17 C 0.324 3.676 18 O -0.444 6.444 19 C -0.016 4.016 20 C -0.571 4.571 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.561 5.561 24 Si 0.784 3.216 25 H -0.202 1.202 26 H -0.201 1.201 27 H -0.192 1.192 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.249 0.751 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.614 17.763 2.846 20.887 hybrid contribution -1.719 -0.646 -0.612 1.935 sum 8.895 17.117 2.234 19.419 Atomic orbital electron populations 1.21785 0.78013 1.04535 1.01336 1.47835 1.07979 1.06469 1.72467 1.22270 0.98026 0.83436 1.03823 1.20961 0.90651 0.84044 0.76455 1.90850 1.70660 1.33020 1.50829 1.21280 0.90240 0.84829 1.05993 1.46171 1.08146 1.09474 1.73921 1.19593 0.81568 0.89529 0.74678 1.90629 1.55644 1.45162 1.52687 1.21595 0.87906 0.86098 1.13074 1.23433 0.94831 1.03946 0.93511 1.23871 0.91470 1.00441 0.94680 0.82890 1.22530 0.93650 0.95580 1.01636 1.23004 0.93830 1.00183 0.85828 1.48693 1.20808 1.36743 1.27440 1.21441 0.79265 0.83712 0.83141 1.90548 1.70900 1.56776 1.26224 1.18974 0.93981 0.91928 0.96728 1.21297 1.06233 1.18953 1.10599 0.93169 1.25699 1.01004 0.95225 0.96543 1.70014 1.37496 1.23085 1.25475 0.85534 0.79293 0.77760 0.78970 1.20174 1.20122 1.19235 0.93295 0.86058 0.93734 0.90779 0.87669 0.89767 0.86063 0.87011 0.75105 0.86066 0.87835 0.85321 0.89415 0.89958 0.89186 0.94606 0.93629 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.75 10.16 127.77 1.30 3.05 16 2 N -0.61 -13.79 3.27 -871.90 -2.85 -16.64 16 3 C 0.07 0.73 10.21 127.77 1.30 2.04 16 4 C 0.49 16.06 7.74 87.66 0.68 16.74 16 5 O -0.57 -26.24 15.67 -3.04 -0.05 -26.28 16 6 C 0.10 3.00 4.71 85.63 0.40 3.40 16 7 N -0.72 -27.49 5.41 -466.78 -2.53 -30.01 16 8 C 0.56 19.97 7.65 87.66 0.67 20.64 16 9 O -0.56 -19.68 16.84 -3.05 -0.05 -19.73 16 10 C 0.00 0.09 2.48 2.75 0.01 0.10 16 11 C -0.12 -3.13 9.94 30.41 0.30 -2.83 16 12 C -0.09 -1.88 6.76 -10.03 -0.07 -1.95 16 13 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 14 C -0.10 -1.81 6.86 31.79 0.22 -1.59 16 15 C 0.09 2.54 6.95 86.73 0.60 3.15 16 16 N -0.60 -22.38 3.03 -768.21 -2.33 -24.71 16 17 C 0.53 26.02 6.77 87.66 0.59 26.61 16 18 O -0.57 -31.54 14.15 -3.02 -0.04 -31.58 16 19 C 0.02 1.25 4.39 29.10 0.13 1.38 16 20 C -0.53 -32.91 8.92 25.60 0.23 -32.68 16 21 H 0.05 3.31 6.75 -2.91 -0.02 3.29 16 22 C 0.01 0.84 5.46 84.66 0.46 1.30 16 23 N -0.92 -55.06 13.29 21.45 0.28 -54.78 16 24 Si 0.96 47.52 29.54 68.60 2.03 49.54 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 26 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.12 1.31 7.79 -2.39 -0.02 1.30 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.60 7.92 -2.39 -0.02 0.58 16 33 H 0.08 0.81 6.44 -2.39 -0.02 0.80 16 34 H 0.12 2.82 7.40 -2.38 -0.02 2.80 16 35 H 0.11 2.83 8.11 -2.39 -0.02 2.81 16 36 H 0.41 18.75 4.12 -92.71 -0.38 18.37 16 37 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.09 2.58 7.23 -2.38 -0.02 2.56 16 43 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.05 2.44 7.91 -2.39 -0.02 2.43 16 45 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -86.75 374.93 1.92 -84.83 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.63 Total: 30.01 kcal Atomic # 6 Polarization: 32.52 SS G_CDS: 6.83 Total: 39.35 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -7.42 Total: -126.14 kcal Atomic # 8 Polarization: -77.45 SS G_CDS: -0.14 Total: -77.60 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -86.75 1.92 -84.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.221 kcal (2) G-P(sol) polarization free energy of solvation -86.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds