Wall clock time and date at job start Fri Apr 10 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 120.00281 * 2 1 4 4 C 1.34782 * 119.99878 * 179.97438 * 2 1 3 5 5 O 1.21283 * 119.99682 * 0.02562 * 4 2 1 6 6 C 1.50691 * 119.99917 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46927 * 180.02562 * 6 4 2 8 8 C 1.34780 * 119.99794 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00435 * 4.90396 * 8 7 6 10 10 C 1.50698 * 119.99792 * 184.90638 * 8 7 6 11 11 C 1.55645 * 119.72637 * 163.44504 * 10 8 7 12 12 C 1.53126 * 59.72821 * 249.69051 * 11 10 8 13 13 H 1.08997 * 119.80836 * 112.49596 * 12 11 10 14 14 C 1.54697 * 117.55350 * 267.41276 * 12 11 10 15 15 C 1.54965 * 102.69837 * 42.06956 * 14 12 11 16 16 N 1.47391 * 117.18229 * 319.65903 * 10 8 7 17 17 C 1.34778 * 126.94277 * 344.29470 * 16 10 8 18 18 O 1.21283 * 119.99722 * 354.33042 * 17 16 10 19 19 C 1.50700 * 119.99935 * 174.33146 * 17 16 10 20 20 C 1.50697 * 109.47150 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99971 * 0.02562 * 20 19 17 22 22 C 1.37874 * 119.99974 * 180.27222 * 20 19 17 23 23 N 1.31510 * 119.99993 * 359.72574 * 22 20 19 24 24 Si 1.86804 * 119.99847 * 179.72644 * 22 20 19 25 25 H 1.48498 * 109.47242 * 60.00205 * 24 22 20 26 26 H 1.48501 * 109.46778 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47062 * 300.00143 * 24 22 20 28 28 H 1.08998 * 109.46801 * 270.00110 * 1 2 3 29 29 H 1.09007 * 109.46741 * 29.99759 * 1 2 3 30 30 H 1.08999 * 109.47239 * 150.00008 * 1 2 3 31 31 H 1.08992 * 109.47361 * 269.99958 * 3 2 1 32 32 H 1.09004 * 109.46742 * 30.00457 * 3 2 1 33 33 H 1.09005 * 109.47017 * 149.99717 * 3 2 1 34 34 H 1.08996 * 109.47427 * 60.00818 * 6 4 2 35 35 H 1.08999 * 109.47852 * 300.00033 * 6 4 2 36 36 H 0.96993 * 120.00208 * 0.02562 * 7 6 4 37 37 H 1.09003 * 118.16089 * 142.64764 * 11 10 8 38 38 H 1.09008 * 117.17884 * 357.17623 * 11 10 8 39 39 H 1.08999 * 110.76656 * 283.77035 * 14 12 11 40 40 H 1.08996 * 110.76698 * 160.36933 * 14 12 11 41 41 H 1.08996 * 110.66026 * 279.10385 * 15 14 12 42 42 H 1.09007 * 110.65929 * 155.99342 * 15 14 12 43 43 H 1.09001 * 109.46884 * 60.00034 * 19 17 16 44 44 H 1.08995 * 109.46549 * 299.99947 * 19 17 16 45 45 H 0.97003 * 120.00053 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6458 -1.1673 0.0011 7 7 4.1341 -2.5485 0.0010 8 6 5.4592 -2.7948 0.0009 9 8 6.2467 -1.8769 0.0907 10 6 5.9624 -4.2109 -0.1108 11 6 7.4471 -4.4743 -0.4964 12 6 6.3227 -4.8131 -1.4790 13 1 6.2238 -4.2472 -2.4053 14 6 5.7538 -6.2513 -1.4472 15 6 5.6558 -6.5454 0.0711 16 7 5.2321 -5.2464 0.6421 17 6 4.3521 -5.0502 1.6440 18 8 4.1684 -3.9334 2.0797 19 6 3.5964 -6.2186 2.2226 20 6 2.6851 -5.7335 3.3204 21 1 2.6557 -4.6839 3.5735 22 6 1.8926 -6.6301 4.0052 23 7 1.9280 -7.9080 3.6966 24 14 0.7687 -6.0297 5.3711 25 1 -0.1970 -5.0450 4.8207 26 1 0.0284 -7.1820 5.9453 27 1 1.5816 -5.3851 6.4336 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3793 1.5833 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 4.0089 -0.6534 0.8911 35 1 4.0096 -0.6537 -0.8888 36 1 3.5038 -3.2858 0.0002 37 1 7.9633 -5.3061 -0.0171 38 1 8.0652 -3.6047 -0.7202 39 1 6.4372 -6.9481 -1.9324 40 1 4.7686 -6.2876 -1.9121 41 1 6.6263 -6.8421 0.4688 42 1 4.9077 -7.3138 0.2666 43 1 4.3025 -6.9420 2.6302 44 1 3.0032 -6.6912 1.4398 45 1 1.3707 -8.5390 4.1786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:05 Heat of formation + Delta-G solvation = -50.063541 kcal Electronic energy + Delta-G solvation = -28689.282712 eV Core-core repulsion = 24708.884200 eV Total energy + Delta-G solvation = -3980.398512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80308 -39.90597 -38.30836 -37.51413 -35.69809 -34.20938 -32.99393 -32.47591 -30.24862 -29.26241 -28.75991 -27.51528 -25.63460 -24.20471 -23.99319 -22.58130 -20.80314 -19.91809 -19.60921 -18.78238 -17.13215 -16.75675 -16.40597 -16.23859 -16.03599 -15.72152 -15.47974 -14.86416 -14.70255 -14.56408 -14.37048 -14.08770 -13.50591 -13.38268 -13.10868 -12.99211 -12.87215 -12.74103 -12.66950 -12.34611 -12.21817 -12.13551 -12.02725 -11.83261 -11.22199 -11.06490 -10.82198 -10.66200 -10.53016 -10.38378 -9.94961 -9.92394 -9.61353 -9.26687 -8.97131 -8.84889 -8.59913 -8.42029 -8.08080 -6.04944 -4.03886 2.49660 2.57711 2.72536 3.37437 3.38454 3.39757 3.40269 3.47446 3.51616 3.91922 4.36620 4.45116 4.49492 4.65572 4.83718 4.89279 4.97016 5.06898 5.08431 5.14736 5.25770 5.33819 5.34823 5.42636 5.46383 5.53392 5.66369 5.70773 5.71875 5.78772 5.92900 5.98978 6.08559 6.14632 6.25791 6.54353 6.70076 7.14156 7.15846 7.29806 7.77097 7.96918 7.98369 8.05384 8.33375 8.43481 9.04648 9.10152 9.60654 11.07446 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.005924 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.907054 B = 4725.172252 C = 7603.802714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.075 3.925 4 C 0.506 3.494 5 O -0.516 6.516 6 C 0.109 3.891 7 N -0.692 5.692 8 C 0.579 3.421 9 O -0.550 6.550 10 C 0.053 3.947 11 C -0.125 4.125 12 C -0.154 4.154 13 H 0.120 0.880 14 C -0.107 4.107 15 C 0.098 3.902 16 N -0.601 5.601 17 C 0.528 3.472 18 O -0.523 6.523 19 C 0.017 3.983 20 C -0.506 4.506 21 H 0.074 0.926 22 C 0.057 3.943 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.276 1.276 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.416 0.584 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 11.146 -13.884 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.359 5.359 3 C -0.068 4.068 4 C 0.294 3.706 5 O -0.390 6.390 6 C -0.018 4.018 7 N -0.346 5.346 8 C 0.365 3.635 9 O -0.428 6.428 10 C -0.037 4.037 11 C -0.165 4.165 12 C -0.174 4.174 13 H 0.138 0.862 14 C -0.145 4.145 15 C -0.025 4.025 16 N -0.339 5.339 17 C 0.321 3.679 18 O -0.397 6.397 19 C -0.022 4.022 20 C -0.544 4.544 21 H 0.092 0.908 22 C -0.144 4.144 23 N -0.540 5.540 24 Si 0.729 3.271 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.256 0.744 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.801 11.694 -13.391 18.415 hybrid contribution -0.912 -0.025 0.843 1.243 sum 3.889 11.669 -12.547 17.570 Atomic orbital electron populations 1.21649 0.78751 1.03039 1.02185 1.47640 1.07285 1.06156 1.74864 1.21872 0.97620 0.85259 1.02048 1.20602 0.90082 0.83653 0.76314 1.90782 1.69624 1.30634 1.48005 1.20970 0.90665 0.86203 1.03989 1.45493 1.07362 1.07840 1.73896 1.18726 0.81769 0.88103 0.74930 1.90641 1.55858 1.45356 1.50986 1.21750 0.96484 0.88303 0.97172 1.23722 0.89577 1.03465 0.99708 1.23771 1.02259 0.97805 0.93588 0.86212 1.22358 1.01600 0.94007 0.96515 1.22557 1.01074 0.86754 0.92080 1.48896 1.43010 1.05324 1.36631 1.22128 0.76794 0.93176 0.75832 1.90608 1.64606 1.26224 1.58243 1.19204 0.95189 0.90711 0.97106 1.21088 1.21759 0.95288 1.16288 0.90798 1.24960 0.97106 0.94773 0.97540 1.69940 1.40562 1.01676 1.41862 0.86495 0.80652 0.78038 0.81916 1.20130 1.21321 1.20197 0.92507 0.91267 0.90335 0.92283 0.90718 0.90565 0.88453 0.88951 0.74419 0.87677 0.86722 0.89589 0.89803 0.91027 0.88435 0.93443 0.93269 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.44 59.85 0.62 1.53 16 2 N -0.62 -7.41 3.27 -189.51 -0.62 -8.03 16 3 C 0.08 0.57 10.24 59.85 0.61 1.19 16 4 C 0.51 8.03 7.74 -10.99 -0.09 7.94 16 5 O -0.52 -10.49 15.25 5.55 0.08 -10.40 16 6 C 0.11 1.65 4.71 -5.20 -0.02 1.63 16 7 N -0.69 -12.78 4.10 -61.48 -0.25 -13.03 16 8 C 0.58 10.87 6.45 -10.98 -0.07 10.80 16 9 O -0.55 -11.02 16.67 5.56 0.09 -10.92 16 10 C 0.05 0.89 3.36 -130.68 -0.44 0.45 16 11 C -0.13 -1.61 9.59 -25.26 -0.24 -1.86 16 12 C -0.15 -1.88 6.95 -89.26 -0.62 -2.50 16 13 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.11 -1.17 7.01 -24.80 -0.17 -1.34 16 15 C 0.10 1.37 6.52 -2.13 -0.01 1.36 16 16 N -0.60 -11.04 3.25 -155.03 -0.50 -11.54 16 17 C 0.53 12.30 7.04 -10.98 -0.08 12.22 16 18 O -0.52 -13.63 12.62 5.55 0.07 -13.56 16 19 C 0.02 0.44 4.30 -29.04 -0.12 0.31 16 20 C -0.51 -14.87 8.92 -34.44 -0.31 -15.18 16 21 H 0.07 2.29 6.75 -52.48 -0.35 1.93 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 23 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 24 Si 0.90 22.67 29.54 -169.99 -5.02 17.65 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.08 0.95 7.42 -51.93 -0.39 0.57 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.08 0.58 6.44 -51.93 -0.33 0.24 16 34 H 0.10 1.48 7.40 -51.93 -0.38 1.09 16 35 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 36 H 0.42 8.55 5.86 -40.82 -0.24 8.31 16 37 H 0.10 1.21 7.20 -51.93 -0.37 0.83 16 38 H 0.11 1.42 7.99 -51.92 -0.41 1.01 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.88 7.31 -51.93 -0.38 0.51 16 42 H 0.10 1.40 7.27 -51.92 -0.38 1.02 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -37.39 371.14 -7.45 -44.84 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.59 Total: 7.08 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: -1.04 Total: 18.10 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.64 Total: -58.37 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: 0.25 Total: -34.89 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.39 -7.45 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.221 kcal (2) G-P(sol) polarization free energy of solvation -37.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds