Wall clock time and date at job start Fri Apr 10 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 120.00281 * 2 1 4 4 C 1.34782 * 119.99878 * 179.97438 * 2 1 3 5 5 O 1.21283 * 119.99682 * 0.02562 * 4 2 1 6 6 C 1.50691 * 119.99917 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46927 * 180.02562 * 6 4 2 8 8 C 1.34780 * 119.99794 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00435 * 4.90396 * 8 7 6 10 10 C 1.50698 * 119.99792 * 184.90638 * 8 7 6 11 11 C 1.55645 * 119.72637 * 163.44504 * 10 8 7 12 12 C 1.53126 * 59.72821 * 249.69051 * 11 10 8 13 13 H 1.08997 * 119.80836 * 112.49596 * 12 11 10 14 14 C 1.54697 * 117.55350 * 267.41276 * 12 11 10 15 15 C 1.54965 * 102.69837 * 42.06956 * 14 12 11 16 16 N 1.47391 * 117.18229 * 319.65903 * 10 8 7 17 17 C 1.34778 * 126.94277 * 344.29470 * 16 10 8 18 18 O 1.21283 * 119.99722 * 354.33042 * 17 16 10 19 19 C 1.50700 * 119.99935 * 174.33146 * 17 16 10 20 20 C 1.50697 * 109.47150 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99971 * 0.02562 * 20 19 17 22 22 C 1.37874 * 119.99974 * 180.27222 * 20 19 17 23 23 N 1.31510 * 119.99993 * 359.72574 * 22 20 19 24 24 Si 1.86804 * 119.99847 * 179.72644 * 22 20 19 25 25 H 1.48498 * 109.47242 * 60.00205 * 24 22 20 26 26 H 1.48501 * 109.46778 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47062 * 300.00143 * 24 22 20 28 28 H 1.08998 * 109.46801 * 270.00110 * 1 2 3 29 29 H 1.09007 * 109.46741 * 29.99759 * 1 2 3 30 30 H 1.08999 * 109.47239 * 150.00008 * 1 2 3 31 31 H 1.08992 * 109.47361 * 269.99958 * 3 2 1 32 32 H 1.09004 * 109.46742 * 30.00457 * 3 2 1 33 33 H 1.09005 * 109.47017 * 149.99717 * 3 2 1 34 34 H 1.08996 * 109.47427 * 60.00818 * 6 4 2 35 35 H 1.08999 * 109.47852 * 300.00033 * 6 4 2 36 36 H 0.96993 * 120.00208 * 0.02562 * 7 6 4 37 37 H 1.09003 * 118.16089 * 142.64764 * 11 10 8 38 38 H 1.09008 * 117.17884 * 357.17623 * 11 10 8 39 39 H 1.08999 * 110.76656 * 283.77035 * 14 12 11 40 40 H 1.08996 * 110.76698 * 160.36933 * 14 12 11 41 41 H 1.08996 * 110.66026 * 279.10385 * 15 14 12 42 42 H 1.09007 * 110.65929 * 155.99342 * 15 14 12 43 43 H 1.09001 * 109.46884 * 60.00034 * 19 17 16 44 44 H 1.08995 * 109.46549 * 299.99947 * 19 17 16 45 45 H 0.97003 * 120.00053 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6458 -1.1673 0.0011 7 7 4.1341 -2.5485 0.0010 8 6 5.4592 -2.7948 0.0009 9 8 6.2467 -1.8769 0.0907 10 6 5.9624 -4.2109 -0.1108 11 6 7.4471 -4.4743 -0.4964 12 6 6.3227 -4.8131 -1.4790 13 1 6.2238 -4.2472 -2.4053 14 6 5.7538 -6.2513 -1.4472 15 6 5.6558 -6.5454 0.0711 16 7 5.2321 -5.2464 0.6421 17 6 4.3521 -5.0502 1.6440 18 8 4.1684 -3.9334 2.0797 19 6 3.5964 -6.2186 2.2226 20 6 2.6851 -5.7335 3.3204 21 1 2.6557 -4.6839 3.5735 22 6 1.8926 -6.6301 4.0052 23 7 1.9280 -7.9080 3.6966 24 14 0.7687 -6.0297 5.3711 25 1 -0.1970 -5.0450 4.8207 26 1 0.0284 -7.1820 5.9453 27 1 1.5816 -5.3851 6.4336 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3793 1.5833 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 4.0089 -0.6534 0.8911 35 1 4.0096 -0.6537 -0.8888 36 1 3.5038 -3.2858 0.0002 37 1 7.9633 -5.3061 -0.0171 38 1 8.0652 -3.6047 -0.7202 39 1 6.4372 -6.9481 -1.9324 40 1 4.7686 -6.2876 -1.9121 41 1 6.6263 -6.8421 0.4688 42 1 4.9077 -7.3138 0.2666 43 1 4.3025 -6.9420 2.6302 44 1 3.0032 -6.6912 1.4398 45 1 1.3707 -8.5390 4.1786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:05 Heat of formation + Delta-G solvation = -77.942739 kcal Electronic energy + Delta-G solvation = -28690.491644 eV Core-core repulsion = 24708.884200 eV Total energy + Delta-G solvation = -3981.607444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10582 -41.10195 -39.78891 -39.05266 -36.77492 -35.58390 -35.14435 -33.93548 -31.40264 -30.89169 -30.22794 -28.40961 -26.68342 -26.05179 -25.15271 -24.03306 -22.18739 -21.11937 -20.76344 -20.03572 -18.76948 -18.29534 -17.97688 -17.44064 -17.36916 -17.18577 -16.77155 -16.49767 -16.11020 -16.03892 -15.65083 -15.55785 -14.95336 -14.58612 -14.35835 -14.28629 -14.05246 -13.84729 -13.74226 -13.68066 -13.49651 -13.35672 -13.18952 -12.94156 -12.93828 -12.85224 -12.63638 -12.11493 -12.05115 -11.68303 -11.58735 -11.46992 -11.19018 -10.88489 -10.65928 -10.62574 -10.13687 -9.82095 -9.44707 -8.28561 -6.34658 1.18497 1.33882 1.34744 1.37122 1.45612 1.66611 1.74320 2.01286 2.24005 2.39492 2.72851 3.06798 3.29780 3.32025 3.51524 3.71520 3.91126 4.08280 4.11306 4.12489 4.24253 4.27189 4.34967 4.42994 4.43282 4.66278 4.71662 4.72977 4.83650 4.85190 4.86313 4.97638 5.04765 5.12038 5.18271 5.20196 5.22871 5.36205 5.39508 5.70187 6.01641 6.11289 6.33174 6.54296 6.76824 6.90163 7.02179 7.29493 7.38976 8.83472 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.005924 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.907054 B = 4725.172252 C = 7603.802714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.616 5.616 3 C 0.066 3.934 4 C 0.499 3.501 5 O -0.574 6.574 6 C 0.108 3.892 7 N -0.699 5.699 8 C 0.570 3.430 9 O -0.573 6.573 10 C -0.002 4.002 11 C -0.104 4.104 12 C -0.117 4.117 13 H 0.141 0.859 14 C -0.095 4.095 15 C 0.086 3.914 16 N -0.596 5.596 17 C 0.527 3.473 18 O -0.563 6.563 19 C 0.026 3.974 20 C -0.534 4.534 21 H 0.049 0.951 22 C 0.015 3.985 23 N -0.920 5.920 24 Si 0.959 3.041 25 H -0.279 1.279 26 H -0.269 1.269 27 H -0.273 1.273 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.404 0.596 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 11.718 -15.463 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.349 5.349 3 C -0.075 4.075 4 C 0.287 3.713 5 O -0.454 6.454 6 C -0.018 4.018 7 N -0.351 5.351 8 C 0.357 3.643 9 O -0.453 6.453 10 C -0.092 4.092 11 C -0.143 4.143 12 C -0.137 4.137 13 H 0.159 0.841 14 C -0.133 4.133 15 C -0.035 4.035 16 N -0.332 5.332 17 C 0.318 3.682 18 O -0.441 6.441 19 C -0.013 4.013 20 C -0.572 4.572 21 H 0.067 0.933 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.784 3.216 25 H -0.204 1.204 26 H -0.193 1.193 27 H -0.199 1.199 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.241 0.759 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.908 12.293 -15.020 20.289 hybrid contribution -1.216 -0.150 1.271 1.766 sum 4.692 12.143 -13.749 18.934 Atomic orbital electron populations 1.21798 0.77929 1.04023 1.02258 1.47812 1.08086 1.06447 1.72565 1.22207 0.97610 0.83590 1.04074 1.20812 0.90387 0.84056 0.76030 1.90748 1.70536 1.32877 1.51219 1.21150 0.90429 0.85135 1.05125 1.45657 1.07311 1.08624 1.73471 1.19180 0.81587 0.89114 0.74418 1.90604 1.56098 1.46261 1.52346 1.22095 0.99350 0.86940 1.00769 1.23889 0.87704 1.04164 0.98538 1.23986 0.99762 0.97802 0.92140 0.84139 1.22411 1.02710 0.94037 0.94097 1.22942 1.01684 0.84535 0.94326 1.48565 1.41697 1.07911 1.34979 1.21440 0.77911 0.91651 0.77152 1.90573 1.66297 1.27013 1.60224 1.18933 0.94773 0.91537 0.96060 1.21255 1.23467 0.94360 1.18105 0.93299 1.25689 0.98206 0.94967 0.99553 1.70001 1.41036 1.02321 1.42621 0.85602 0.78802 0.78027 0.79182 1.20414 1.19296 1.19852 0.92905 0.86996 0.92577 0.89769 0.88229 0.90656 0.88850 0.85884 0.75881 0.85820 0.86066 0.85318 0.89823 0.88754 0.89441 0.94129 0.94232 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 10.44 127.77 1.33 3.01 16 2 N -0.62 -14.36 3.27 -871.88 -2.85 -17.22 16 3 C 0.07 0.88 10.24 127.77 1.31 2.18 16 4 C 0.50 16.46 7.74 87.65 0.68 17.14 16 5 O -0.57 -24.96 15.25 -3.04 -0.05 -25.01 16 6 C 0.11 3.37 4.71 85.63 0.40 3.77 16 7 N -0.70 -26.83 4.10 -466.80 -1.91 -28.74 16 8 C 0.57 21.63 6.45 87.66 0.57 22.19 16 9 O -0.57 -22.98 16.67 -3.03 -0.05 -23.04 16 10 C 0.00 -0.07 3.36 3.86 0.01 -0.06 16 11 C -0.10 -2.36 9.59 31.55 0.30 -2.06 16 12 C -0.12 -2.47 6.95 -9.91 -0.07 -2.53 16 13 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.09 -1.75 7.01 31.84 0.22 -1.53 16 15 C 0.09 2.27 6.52 86.75 0.57 2.84 16 16 N -0.60 -22.02 3.25 -762.77 -2.48 -24.50 16 17 C 0.53 25.70 7.04 87.66 0.62 26.31 16 18 O -0.56 -31.10 12.62 -3.04 -0.04 -31.14 16 19 C 0.03 1.41 4.30 29.10 0.13 1.54 16 20 C -0.53 -32.81 8.92 25.60 0.23 -32.59 16 21 H 0.05 3.20 6.75 -2.91 -0.02 3.18 16 22 C 0.01 0.88 5.46 84.65 0.46 1.34 16 23 N -0.92 -54.87 13.29 21.45 0.28 -54.58 16 24 Si 0.96 47.30 29.54 68.60 2.03 49.33 16 25 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.31 8.07 -2.38 -0.02 1.29 16 30 H 0.06 1.42 7.42 -2.39 -0.02 1.40 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 33 H 0.07 1.04 6.44 -2.38 -0.02 1.02 16 34 H 0.09 2.94 7.40 -2.39 -0.02 2.93 16 35 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 36 H 0.40 17.63 5.86 -92.71 -0.54 17.09 16 37 H 0.12 2.35 7.20 -2.39 -0.02 2.33 16 38 H 0.12 2.64 7.99 -2.38 -0.02 2.62 16 39 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 2.07 7.31 -2.39 -0.02 2.05 16 42 H 0.09 2.48 7.27 -2.38 -0.02 2.46 16 43 H 0.04 2.19 8.14 -2.39 -0.02 2.18 16 44 H 0.04 2.16 8.04 -2.39 -0.02 2.14 16 45 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -86.79 371.14 2.16 -84.63 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.47 Total: 28.71 kcal Atomic # 6 Polarization: 34.81 SS G_CDS: 6.76 Total: 41.56 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -6.96 Total: -125.05 kcal Atomic # 8 Polarization: -79.05 SS G_CDS: -0.14 Total: -79.18 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -86.79 2.16 -84.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.690 kcal (2) G-P(sol) polarization free energy of solvation -86.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds