Wall clock time and date at job start Fri Apr 10 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99537 * 2 1 4 4 C 1.34777 * 120.00199 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 2 1 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 2 1 7 7 N 1.46491 * 109.46957 * 179.72354 * 6 4 2 8 8 C 1.34780 * 120.00091 * 179.97438 * 7 6 4 9 9 O 1.21277 * 119.99974 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00003 * 180.02562 * 8 7 6 11 11 C 1.54899 * 129.08913 * 299.93190 * 10 8 7 12 12 C 1.57170 * 77.91289 * 180.16804 * 11 10 8 13 13 N 1.46502 * 129.24674 * 179.19112 * 12 11 10 14 14 C 1.34775 * 119.99623 * 61.29412 * 13 12 11 15 15 O 1.21289 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99947 * 179.97438 * 14 13 12 17 17 C 1.50707 * 109.47074 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99819 * 359.97438 * 17 16 14 19 19 C 1.37870 * 119.99751 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99793 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00464 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47200 * 89.99392 * 21 19 17 23 23 H 1.48494 * 109.47207 * 209.99883 * 21 19 17 24 24 H 1.48496 * 109.46817 * 330.00116 * 21 19 17 25 25 C 1.54411 * 83.73311 * 42.47826 * 12 11 10 26 26 C 1.54889 * 83.77785 * 317.35915 * 12 11 10 27 27 H 1.09002 * 109.46857 * 239.99212 * 1 2 3 28 28 H 1.09001 * 109.47503 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47134 * 120.00021 * 1 2 3 30 30 H 1.08998 * 109.46921 * 269.99744 * 3 2 1 31 31 H 1.08994 * 109.46996 * 30.00327 * 3 2 1 32 32 H 1.09001 * 109.46578 * 150.00190 * 3 2 1 33 33 H 1.09004 * 109.46965 * 299.72211 * 6 4 2 34 34 H 1.08994 * 109.46990 * 59.72065 * 6 4 2 35 35 H 0.97003 * 120.00560 * 359.97438 * 7 6 4 36 36 H 1.08997 * 114.97569 * 291.96452 * 11 10 8 37 37 H 1.08997 * 114.96892 * 67.13640 * 11 10 8 38 38 H 0.96998 * 120.00123 * 241.28461 * 13 12 11 39 39 H 1.09005 * 109.46778 * 299.99127 * 16 14 13 40 40 H 1.08997 * 109.47505 * 59.99843 * 16 14 13 41 41 H 0.97005 * 120.00260 * 179.97438 * 20 19 17 42 42 H 1.08994 * 114.93489 * 205.05846 * 25 12 11 43 43 H 1.09001 * 114.93664 * 70.02788 * 25 12 11 44 44 H 1.08997 * 116.11680 * 290.12433 * 26 12 11 45 45 H 1.08994 * 113.83392 * 154.96081 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0057 7 7 4.1342 -2.5482 0.0105 8 6 5.4593 -2.7945 0.0160 9 8 6.2474 -1.8727 0.0165 10 6 5.9616 -4.2153 0.0203 11 6 5.7176 -5.3344 1.0632 12 6 6.6298 -6.0602 0.0090 13 7 7.1390 -7.4339 0.0135 14 6 6.2789 -8.4713 -0.0047 15 8 5.0834 -8.2678 -0.0243 16 6 6.8026 -9.8844 -0.0006 17 6 5.6451 -10.8492 -0.0229 18 1 4.6316 -10.4764 -0.0381 19 6 5.8800 -12.2078 -0.0240 20 7 4.8699 -13.0497 -0.0430 21 14 7.6330 -12.8527 0.0029 22 1 8.0742 -13.0286 1.4099 23 1 7.6908 -14.1589 -0.7010 24 1 8.5276 -11.8830 -0.6786 25 6 7.4169 -4.7319 0.0267 26 6 5.7255 -5.3379 -1.0205 27 1 -0.3633 -0.5140 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.3791 1.5834 -1.0277 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1385 0.5138 33 1 4.0129 -0.6550 -0.8838 34 1 4.0055 -0.6515 0.8961 35 1 3.5039 -3.2856 0.0097 36 1 6.1861 -5.1694 2.0334 37 1 4.6890 -5.6895 1.1248 38 1 8.0951 -7.5967 0.0294 39 1 7.4256 -10.0435 -0.8808 40 1 7.3955 -10.0496 0.8990 41 1 5.0351 -14.0056 -0.0441 42 1 7.9832 -4.5211 -0.8804 43 1 7.9694 -4.5373 0.9460 44 1 4.6974 -5.6934 -1.0887 45 1 6.2013 -5.1763 -1.9877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:07 Heat of formation + Delta-G solvation = 1.387037 kcal Electronic energy + Delta-G solvation = -26641.587459 eV Core-core repulsion = 22663.420012 eV Total energy + Delta-G solvation = -3978.167447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.11167 -40.53625 -39.04233 -38.20732 -36.17557 -34.76368 -33.11429 -32.83267 -29.97407 -29.57961 -28.06268 -26.35989 -25.79068 -25.72367 -24.61912 -23.24046 -20.76510 -20.17571 -19.55753 -18.69500 -17.57911 -17.20282 -16.90260 -16.71860 -16.60261 -15.92067 -15.64203 -15.31481 -14.90148 -14.51433 -14.26034 -14.22894 -14.15306 -13.84844 -13.61623 -13.34515 -13.27121 -13.20104 -12.81711 -12.74911 -12.47526 -12.17623 -12.00604 -11.50316 -11.36032 -11.18148 -10.82047 -10.60163 -10.45481 -10.44346 -10.32334 -10.20809 -9.97598 -9.51098 -9.28396 -9.27662 -8.83422 -8.62286 -8.56156 -6.03524 -4.03589 2.03408 2.21980 2.24849 2.86695 3.26173 3.32279 3.34724 3.46733 3.47267 3.87351 4.12594 4.29097 4.39372 4.40163 4.42271 4.46071 4.58338 4.64749 4.70429 4.76201 4.85150 4.91664 5.09191 5.11044 5.27111 5.33024 5.53296 5.58662 5.65208 5.80945 5.84721 5.88641 5.95479 6.01378 6.02204 6.13840 6.58255 6.68898 6.89051 6.95415 7.19619 7.52176 7.54334 7.92108 8.08172 8.54874 9.04810 9.17298 9.54370 11.09370 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.002217 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.107211 B =12624.068373 C =13744.693140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.620 5.620 3 C 0.072 3.928 4 C 0.506 3.494 5 O -0.526 6.526 6 C 0.104 3.896 7 N -0.715 5.715 8 C 0.590 3.410 9 O -0.536 6.536 10 C -0.168 4.168 11 C -0.104 4.104 12 C 0.113 3.887 13 N -0.696 5.696 14 C 0.525 3.475 15 O -0.519 6.519 16 C -0.027 4.027 17 C -0.513 4.513 18 H 0.093 0.907 19 C 0.068 3.932 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.081 4.081 26 C -0.099 4.099 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.417 0.583 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.403 0.597 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.264 0.736 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 30.655 0.255 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.355 5.355 3 C -0.071 4.071 4 C 0.293 3.707 5 O -0.402 6.402 6 C -0.024 4.024 7 N -0.370 5.370 8 C 0.376 3.624 9 O -0.413 6.413 10 C -0.172 4.172 11 C -0.143 4.143 12 C 0.024 3.976 13 N -0.348 5.348 14 C 0.314 3.686 15 O -0.392 6.392 16 C -0.067 4.067 17 C -0.551 4.551 18 H 0.111 0.889 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.120 4.120 26 C -0.138 4.138 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.255 0.745 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.238 0.762 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.024 30.642 0.238 30.660 hybrid contribution 1.017 -0.671 0.032 1.219 sum -0.008 29.971 0.270 29.973 Atomic orbital electron populations 1.21680 0.78335 1.02518 1.02830 1.47685 1.07495 1.06234 1.74056 1.21971 0.97584 0.85019 1.02541 1.20571 0.89966 0.83676 0.76465 1.90763 1.69821 1.30757 1.48870 1.21084 0.90710 0.85767 1.04807 1.45629 1.07589 1.08115 1.75707 1.18442 0.81259 0.87844 0.74826 1.90695 1.55616 1.45325 1.49639 1.23284 1.00219 0.91191 1.02469 1.24874 1.01688 0.91428 0.96320 1.22887 0.95283 0.82927 0.96550 1.45131 1.09978 1.01863 1.77854 1.21538 0.86468 0.86982 0.73590 1.90589 1.16084 1.85519 1.47036 1.19690 0.99573 0.88764 0.98673 1.20982 0.93872 0.89450 1.50808 0.88916 1.24979 0.96805 0.96751 0.94788 1.69894 1.30509 1.02513 1.50564 0.86881 0.85631 0.78749 0.78550 1.20140 1.21133 1.19093 1.23954 0.93609 0.91558 1.02862 1.24395 1.01690 0.91303 0.96429 0.91780 0.90406 0.91771 0.91924 0.90431 0.90486 0.88174 0.88177 0.74479 0.90396 0.89253 0.76160 0.93436 0.93871 0.92572 0.89980 0.89922 0.89129 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.16 59.85 0.61 1.09 16 2 N -0.62 -3.96 3.27 -189.51 -0.62 -4.58 16 3 C 0.07 0.20 10.22 59.85 0.61 0.81 16 4 C 0.51 4.69 7.74 -10.98 -0.09 4.61 16 5 O -0.53 -6.96 15.67 5.55 0.09 -6.88 16 6 C 0.10 0.85 4.71 -5.20 -0.02 0.83 16 7 N -0.71 -7.72 5.53 -61.48 -0.34 -8.06 16 8 C 0.59 7.39 7.94 -10.98 -0.09 7.30 16 9 O -0.54 -7.84 17.10 5.56 0.10 -7.74 16 10 C -0.17 -2.10 3.36 -172.26 -0.58 -2.67 16 11 C -0.10 -1.43 7.93 -24.70 -0.20 -1.62 16 12 C 0.11 1.64 3.92 -147.16 -0.58 1.06 16 13 N -0.70 -11.19 5.71 -62.67 -0.36 -11.55 16 14 C 0.52 11.27 7.82 -10.99 -0.09 11.19 16 15 O -0.52 -13.09 15.38 5.55 0.09 -13.00 16 16 C -0.03 -0.63 4.53 -29.03 -0.13 -0.76 16 17 C -0.51 -14.90 9.48 -34.44 -0.33 -15.23 16 18 H 0.09 3.06 7.00 -52.49 -0.37 2.70 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 21 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 25 C -0.08 -0.95 7.78 -26.71 -0.21 -1.16 16 26 C -0.10 -1.37 7.76 -25.98 -0.20 -1.57 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.20 7.79 -51.93 -0.40 -0.20 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.09 7.92 -51.93 -0.41 -0.32 16 32 H 0.08 0.17 6.43 -51.93 -0.33 -0.17 16 33 H 0.10 0.71 8.11 -51.93 -0.42 0.28 16 34 H 0.10 0.69 7.40 -51.93 -0.38 0.31 16 35 H 0.42 4.75 7.44 -40.82 -0.30 4.45 16 36 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 37 H 0.09 1.36 7.97 -51.93 -0.41 0.94 16 38 H 0.40 5.14 8.83 -40.82 -0.36 4.78 16 39 H 0.05 1.04 7.20 -51.93 -0.37 0.66 16 40 H 0.04 0.93 7.57 -51.93 -0.39 0.54 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 43 H 0.08 0.89 7.91 -51.93 -0.41 0.47 16 44 H 0.09 1.39 7.97 -51.93 -0.41 0.97 16 45 H 0.08 0.98 7.93 -51.93 -0.41 0.56 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -37.90 379.71 -7.26 -45.17 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.66 Total: 6.11 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.38 Total: 5.76 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.54 Total: -51.23 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.27 Total: -27.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.90 -7.26 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.555 kcal (2) G-P(sol) polarization free energy of solvation -37.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds