Wall clock time and date at job start Fri Apr 10 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99537 * 2 1 4 4 C 1.34777 * 120.00199 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 2 1 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 2 1 7 7 N 1.46491 * 109.46957 * 179.72354 * 6 4 2 8 8 C 1.34780 * 120.00091 * 179.97438 * 7 6 4 9 9 O 1.21277 * 119.99974 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00003 * 180.02562 * 8 7 6 11 11 C 1.54899 * 129.08913 * 299.93190 * 10 8 7 12 12 C 1.57170 * 77.91289 * 180.16804 * 11 10 8 13 13 N 1.46502 * 129.24674 * 179.19112 * 12 11 10 14 14 C 1.34775 * 119.99623 * 61.29412 * 13 12 11 15 15 O 1.21289 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99947 * 179.97438 * 14 13 12 17 17 C 1.50707 * 109.47074 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99819 * 359.97438 * 17 16 14 19 19 C 1.37870 * 119.99751 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99793 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00464 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47200 * 89.99392 * 21 19 17 23 23 H 1.48494 * 109.47207 * 209.99883 * 21 19 17 24 24 H 1.48496 * 109.46817 * 330.00116 * 21 19 17 25 25 C 1.54411 * 83.73311 * 42.47826 * 12 11 10 26 26 C 1.54889 * 83.77785 * 317.35915 * 12 11 10 27 27 H 1.09002 * 109.46857 * 239.99212 * 1 2 3 28 28 H 1.09001 * 109.47503 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47134 * 120.00021 * 1 2 3 30 30 H 1.08998 * 109.46921 * 269.99744 * 3 2 1 31 31 H 1.08994 * 109.46996 * 30.00327 * 3 2 1 32 32 H 1.09001 * 109.46578 * 150.00190 * 3 2 1 33 33 H 1.09004 * 109.46965 * 299.72211 * 6 4 2 34 34 H 1.08994 * 109.46990 * 59.72065 * 6 4 2 35 35 H 0.97003 * 120.00560 * 359.97438 * 7 6 4 36 36 H 1.08997 * 114.97569 * 291.96452 * 11 10 8 37 37 H 1.08997 * 114.96892 * 67.13640 * 11 10 8 38 38 H 0.96998 * 120.00123 * 241.28461 * 13 12 11 39 39 H 1.09005 * 109.46778 * 299.99127 * 16 14 13 40 40 H 1.08997 * 109.47505 * 59.99843 * 16 14 13 41 41 H 0.97005 * 120.00260 * 179.97438 * 20 19 17 42 42 H 1.08994 * 114.93489 * 205.05846 * 25 12 11 43 43 H 1.09001 * 114.93664 * 70.02788 * 25 12 11 44 44 H 1.08997 * 116.11680 * 290.12433 * 26 12 11 45 45 H 1.08994 * 113.83392 * 154.96081 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0057 7 7 4.1342 -2.5482 0.0105 8 6 5.4593 -2.7945 0.0160 9 8 6.2474 -1.8727 0.0165 10 6 5.9616 -4.2153 0.0203 11 6 5.7176 -5.3344 1.0632 12 6 6.6298 -6.0602 0.0090 13 7 7.1390 -7.4339 0.0135 14 6 6.2789 -8.4713 -0.0047 15 8 5.0834 -8.2678 -0.0243 16 6 6.8026 -9.8844 -0.0006 17 6 5.6451 -10.8492 -0.0229 18 1 4.6316 -10.4764 -0.0381 19 6 5.8800 -12.2078 -0.0240 20 7 4.8699 -13.0497 -0.0430 21 14 7.6330 -12.8527 0.0029 22 1 8.0742 -13.0286 1.4099 23 1 7.6908 -14.1589 -0.7010 24 1 8.5276 -11.8830 -0.6786 25 6 7.4169 -4.7319 0.0267 26 6 5.7255 -5.3379 -1.0205 27 1 -0.3633 -0.5140 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.3791 1.5834 -1.0277 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1385 0.5138 33 1 4.0129 -0.6550 -0.8838 34 1 4.0055 -0.6515 0.8961 35 1 3.5039 -3.2856 0.0097 36 1 6.1861 -5.1694 2.0334 37 1 4.6890 -5.6895 1.1248 38 1 8.0951 -7.5967 0.0294 39 1 7.4256 -10.0435 -0.8808 40 1 7.3955 -10.0496 0.8990 41 1 5.0351 -14.0056 -0.0441 42 1 7.9832 -4.5211 -0.8804 43 1 7.9694 -4.5373 0.9460 44 1 4.6974 -5.6934 -1.0887 45 1 6.2013 -5.1763 -1.9877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:07 Heat of formation + Delta-G solvation = -29.692515 kcal Electronic energy + Delta-G solvation = -26642.935170 eV Core-core repulsion = 22663.420012 eV Total energy + Delta-G solvation = -3979.515158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.19506 -41.27480 -40.19858 -39.68592 -36.78238 -35.65095 -34.99611 -34.64993 -31.61488 -30.59084 -28.52345 -27.08834 -26.88044 -26.73486 -25.94923 -24.73954 -22.03110 -21.19230 -20.63318 -19.77471 -18.97870 -18.54818 -17.95816 -17.62374 -17.35913 -17.21247 -16.80151 -16.31948 -16.16400 -16.03848 -15.65176 -15.31458 -15.24133 -15.02835 -14.59880 -14.37327 -14.17035 -13.91769 -13.74945 -13.58140 -13.54820 -13.37415 -12.83543 -12.80595 -12.78273 -12.52559 -12.36088 -12.22911 -11.85210 -11.57205 -11.52046 -11.42851 -11.25086 -11.18432 -10.77476 -10.55013 -10.37548 -9.98073 -9.81797 -8.24698 -6.33395 1.22674 1.35385 1.41397 1.45639 1.53787 1.56152 1.80556 2.01600 2.28425 2.40008 3.08578 3.10570 3.22447 3.29440 3.33387 3.34706 3.44400 3.67277 4.14398 4.22395 4.28402 4.34219 4.39839 4.46436 4.48331 4.59725 4.69059 4.73641 4.73830 4.79501 4.87796 4.87955 4.91968 4.93549 4.94619 5.07957 5.10250 5.37740 5.49389 5.62130 6.13976 6.24465 6.25811 6.69041 6.86867 6.88725 6.96491 7.26860 7.49739 8.92894 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.002217 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.107211 B =12624.068373 C =13744.693140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.614 5.614 3 C 0.063 3.937 4 C 0.500 3.500 5 O -0.578 6.578 6 C 0.104 3.896 7 N -0.714 5.714 8 C 0.594 3.406 9 O -0.554 6.554 10 C -0.155 4.155 11 C -0.108 4.108 12 C 0.089 3.911 13 N -0.672 5.672 14 C 0.524 3.476 15 O -0.571 6.571 16 C -0.026 4.026 17 C -0.533 4.533 18 H 0.028 0.972 19 C -0.001 4.001 20 N -0.955 5.955 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.226 1.226 25 C -0.056 4.056 26 C -0.105 4.105 27 H 0.051 0.949 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.424 0.576 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.268 0.732 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 33.241 0.341 33.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.347 5.347 3 C -0.078 4.078 4 C 0.288 3.712 5 O -0.459 6.459 6 C -0.022 4.022 7 N -0.367 5.367 8 C 0.380 3.620 9 O -0.432 6.432 10 C -0.159 4.159 11 C -0.148 4.148 12 C -0.001 4.001 13 N -0.324 5.324 14 C 0.313 3.687 15 O -0.449 6.449 16 C -0.066 4.066 17 C -0.571 4.571 18 H 0.046 0.954 19 C -0.197 4.197 20 N -0.595 5.595 21 Si 0.783 3.217 22 H -0.187 1.187 23 H -0.214 1.214 24 H -0.149 1.149 25 C -0.095 4.095 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.131 0.869 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.250 0.750 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.081 0.919 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.830 33.342 0.324 33.463 hybrid contribution -0.357 -1.363 0.004 1.409 sum 2.473 31.979 0.328 32.076 Atomic orbital electron populations 1.21789 0.77979 1.04417 1.01591 1.47849 1.08026 1.06688 1.72115 1.22272 0.98037 0.83613 1.03866 1.20818 0.90421 0.83832 0.76090 1.90743 1.70730 1.32707 1.51674 1.21286 0.90020 0.84483 1.06437 1.45699 1.07083 1.09300 1.74639 1.18319 0.81510 0.87414 0.74778 1.90687 1.56022 1.45581 1.50910 1.23177 1.01227 0.90802 1.00673 1.24885 1.00352 0.92100 0.97440 1.23192 0.97126 0.82723 0.97033 1.44658 1.10350 1.01695 1.75742 1.21284 0.86131 0.87785 0.73468 1.90589 1.18359 1.86221 1.49688 1.19611 0.97690 0.88458 1.00843 1.21170 0.93349 0.91357 1.51228 0.95356 1.26173 1.03136 0.96678 0.93762 1.70103 1.34167 1.03085 1.52177 0.85516 0.78334 0.78282 0.79536 1.18705 1.21396 1.14899 1.23873 0.92816 0.87989 1.04777 1.24406 1.00346 0.92092 0.97550 0.93038 0.86867 0.93109 0.90669 0.88244 0.89584 0.86459 0.86319 0.75030 0.88799 0.91969 0.73726 0.90857 0.91015 0.92371 0.88080 0.87942 0.91895 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.16 127.77 1.30 2.18 16 2 N -0.61 -7.15 3.27 -871.88 -2.85 -10.00 16 3 C 0.06 0.18 10.22 127.77 1.31 1.49 16 4 C 0.50 9.25 7.74 87.66 0.68 9.92 16 5 O -0.58 -16.19 15.67 -3.04 -0.05 -16.24 16 6 C 0.10 1.59 4.71 85.64 0.40 2.00 16 7 N -0.71 -15.23 5.53 -466.81 -2.58 -17.81 16 8 C 0.59 14.09 7.94 87.66 0.70 14.78 16 9 O -0.55 -14.91 17.10 -3.02 -0.05 -14.96 16 10 C -0.15 -3.68 3.36 -63.68 -0.21 -3.90 16 11 C -0.11 -2.96 7.93 31.91 0.25 -2.71 16 12 C 0.09 2.44 3.92 -6.33 -0.02 2.42 16 13 N -0.67 -20.39 5.71 -470.57 -2.69 -23.08 16 14 C 0.52 22.56 7.82 87.66 0.69 23.24 16 15 O -0.57 -30.37 15.38 -3.06 -0.05 -30.42 16 16 C -0.03 -1.18 4.53 29.10 0.13 -1.05 16 17 C -0.53 -32.03 9.48 25.60 0.24 -31.79 16 18 H 0.03 2.01 7.00 -2.91 -0.02 1.99 16 19 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 20 N -0.96 -61.70 13.96 21.44 0.30 -61.41 16 21 Si 0.96 41.91 27.47 68.60 1.88 43.80 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.23 -8.38 6.54 99.48 0.65 -7.72 16 25 C -0.06 -1.14 7.78 30.61 0.24 -0.90 16 26 C -0.10 -2.88 7.76 31.08 0.24 -2.64 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.33 7.79 -2.39 -0.02 0.32 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.10 -0.10 7.92 -2.39 -0.02 -0.12 16 32 H 0.09 0.12 6.43 -2.39 -0.02 0.11 16 33 H 0.12 1.42 8.11 -2.38 -0.02 1.40 16 34 H 0.12 1.40 7.40 -2.39 -0.02 1.38 16 35 H 0.41 9.90 7.44 -92.71 -0.69 9.21 16 36 H 0.09 2.23 7.91 -2.39 -0.02 2.21 16 37 H 0.06 2.02 7.97 -2.39 -0.02 2.01 16 38 H 0.42 9.29 8.83 -92.71 -0.82 8.47 16 39 H 0.07 2.95 7.20 -2.38 -0.02 2.93 16 40 H 0.07 2.85 7.57 -2.39 -0.02 2.83 16 41 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 42 H 0.10 1.74 7.94 -2.39 -0.02 1.72 16 43 H 0.10 1.74 7.91 -2.39 -0.02 1.73 16 44 H 0.06 2.07 7.97 -2.39 -0.02 2.05 16 45 H 0.09 2.21 7.93 -2.39 -0.02 2.19 16 Total: -1.00 -89.27 379.71 -0.22 -89.49 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.53 Total: 27.22 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 6.40 Total: 13.42 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -7.82 Total: -112.30 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -0.15 Total: -61.62 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Total: -89.27 -0.22 -89.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.793 kcal (2) G-P(sol) polarization free energy of solvation -89.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds