Wall clock time and date at job start Fri Apr 10 2020 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46490 * 120.00322 * 2 1 4 4 C 1.34780 * 119.99566 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.46992 * 179.97438 * 6 4 2 8 8 C 1.34779 * 119.99872 * 179.97438 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 H 1.08999 * 115.56233 * 34.36038 * 10 8 7 12 12 C 1.53152 * 117.51600 * 248.61041 * 10 8 7 13 13 C 1.52325 * 59.82126 * 252.56255 * 12 10 8 14 14 C 1.53292 * 128.82126 * 117.89611 * 13 12 10 15 15 N 1.47726 * 85.85318 * 116.62300 * 14 13 12 16 16 C 1.34780 * 134.38994 * 204.09214 * 15 14 13 17 17 O 1.21281 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99863 * 0.02562 * 16 15 14 19 19 C 1.50703 * 109.46996 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99897 * 359.97438 * 19 18 16 21 21 C 1.37872 * 120.00281 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00175 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00311 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46896 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47264 * 120.00531 * 23 21 19 26 26 H 1.48499 * 109.47254 * 240.00796 * 23 21 19 27 27 C 1.47714 * 91.21343 * 24.09765 * 15 14 13 28 28 H 1.08997 * 109.47274 * 269.99955 * 1 2 3 29 29 H 1.09000 * 109.47018 * 29.99405 * 1 2 3 30 30 H 1.09000 * 109.47828 * 149.99700 * 1 2 3 31 31 H 1.09000 * 109.47691 * 240.00107 * 3 2 1 32 32 H 1.08998 * 109.47146 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.47121 * 120.00203 * 3 2 1 34 34 H 1.09002 * 109.47060 * 299.99722 * 6 4 2 35 35 H 1.09001 * 109.47380 * 59.99809 * 6 4 2 36 36 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 37 37 H 1.09006 * 117.51695 * 359.97438 * 12 10 8 38 38 H 1.08997 * 117.51741 * 145.12354 * 12 10 8 39 39 H 1.08995 * 113.81131 * 230.85853 * 14 13 12 40 40 H 1.09002 * 113.80529 * 2.38917 * 14 13 12 41 41 H 1.09004 * 109.47129 * 299.99603 * 18 16 15 42 42 H 1.09001 * 109.47569 * 60.00024 * 18 16 15 43 43 H 0.96991 * 120.00520 * 179.97438 * 22 21 19 44 44 H 1.09001 * 113.81059 * 221.66817 * 27 15 14 45 45 H 1.08999 * 113.81477 * 90.14051 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 0.0001 7 7 4.1340 -2.5486 -0.0001 8 6 5.4591 -2.7949 -0.0001 9 8 6.2473 -1.8731 -0.0006 10 6 5.9614 -4.2158 -0.0008 11 1 5.3529 -4.9295 -0.5562 12 6 6.6642 -4.7184 1.2637 13 6 7.4697 -4.4290 0.0036 14 6 8.5862 -3.4003 -0.2081 15 7 9.4638 -4.5627 -0.4550 16 6 10.7909 -4.7789 -0.3620 17 8 11.2487 -5.8677 -0.6372 18 6 11.7058 -3.6676 0.0841 19 6 13.1281 -4.1653 0.1039 20 1 13.3475 -5.1846 -0.1779 21 6 14.1493 -3.3196 0.4818 22 7 13.8821 -2.0785 0.8255 23 14 15.9122 -3.9368 0.5070 24 1 15.9449 -5.3589 0.0809 25 1 16.7350 -3.1227 -0.4232 26 1 16.4582 -3.8192 1.8830 27 6 8.3062 -5.3935 -0.8448 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3635 -0.8899 -0.5139 31 1 2.8242 1.3264 -0.8900 32 1 1.4892 2.0971 0.0005 33 1 2.8242 1.3263 0.8900 34 1 4.0095 -0.6530 -0.8895 35 1 4.0089 -0.6541 0.8905 36 1 3.5037 -3.2859 -0.0008 37 1 6.7635 -4.0211 2.0956 38 1 6.5185 -5.7628 1.5394 39 1 8.4400 -2.7657 -1.0822 40 1 8.8426 -2.8382 0.6899 41 1 11.6234 -2.8293 -0.6077 42 1 11.4212 -3.3421 1.0848 43 1 14.6004 -1.4837 1.0917 44 1 8.3410 -6.4092 -0.4508 45 1 8.0762 -5.3560 -1.9095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:10 Heat of formation + Delta-G solvation = -32.315573 kcal Electronic energy + Delta-G solvation = -26421.426627 eV Core-core repulsion = 22441.797725 eV Total energy + Delta-G solvation = -3979.628902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86657 -40.27982 -39.00371 -37.26527 -36.21608 -34.74155 -34.28900 -32.85838 -29.92326 -29.27929 -28.06303 -26.89254 -26.07252 -25.94343 -23.74006 -23.08313 -20.73625 -20.16146 -19.16430 -18.21754 -17.84197 -17.13751 -16.77526 -16.59267 -16.38414 -15.79023 -15.61654 -15.34932 -15.15621 -14.86362 -14.51732 -14.04308 -13.90908 -13.58980 -13.50536 -13.33130 -13.22208 -13.22069 -12.74682 -12.72929 -12.54227 -12.31887 -12.03640 -11.85048 -11.16166 -10.88762 -10.69108 -10.59415 -10.57571 -10.51734 -10.20768 -9.97061 -9.89202 -9.47832 -9.33776 -9.17933 -8.56081 -8.38672 -8.06310 -5.99712 -3.99299 1.96802 2.19658 2.29216 2.89360 3.37421 3.40262 3.44393 3.53947 3.61638 3.84157 3.89865 4.15806 4.44247 4.46802 4.52918 4.64290 4.67360 4.73832 4.77400 4.85376 4.95998 5.06071 5.12123 5.25405 5.33935 5.38067 5.42218 5.60832 5.65077 5.68654 5.76271 5.80645 5.94756 5.96471 6.04702 6.20304 6.63728 6.73787 7.20328 7.29850 7.41927 7.47102 7.98309 8.02253 8.20537 8.53193 9.11618 9.28096 9.65238 11.12695 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.002057 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.904092 B =13607.677959 C =14562.682094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.619 5.619 3 C 0.072 3.928 4 C 0.509 3.491 5 O -0.536 6.536 6 C 0.103 3.897 7 N -0.721 5.721 8 C 0.547 3.453 9 O -0.527 6.527 10 C -0.176 4.176 11 H 0.128 0.872 12 C -0.112 4.112 13 C -0.139 4.139 14 C 0.163 3.837 15 N -0.656 5.656 16 C 0.541 3.459 17 O -0.545 6.545 18 C 0.013 3.987 19 C -0.507 4.507 20 H 0.075 0.925 21 C 0.054 3.946 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.143 3.857 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.412 0.588 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.991 6.550 -0.818 31.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.353 5.353 3 C -0.071 4.071 4 C 0.297 3.703 5 O -0.413 6.413 6 C -0.024 4.024 7 N -0.377 5.377 8 C 0.334 3.666 9 O -0.403 6.403 10 C -0.198 4.198 11 H 0.146 0.854 12 C -0.149 4.149 13 C -0.141 4.141 14 C 0.040 3.960 15 N -0.395 5.395 16 C 0.335 3.665 17 O -0.422 6.422 18 C -0.026 4.026 19 C -0.546 4.546 20 H 0.094 0.906 21 C -0.147 4.147 22 N -0.540 5.540 23 Si 0.729 3.271 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.020 3.980 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.250 0.750 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.143 6.210 -0.895 30.789 hybrid contribution 0.331 -0.209 -0.018 0.392 sum -29.812 6.001 -0.913 30.424 Atomic orbital electron populations 1.21724 0.78515 1.03428 1.02170 1.47677 1.07474 1.06396 1.73781 1.21947 0.97590 0.84855 1.02664 1.20608 0.90098 0.83587 0.75999 1.90705 1.69972 1.30872 1.49740 1.21054 0.90282 0.86105 1.04962 1.45663 1.07621 1.07749 1.76633 1.19700 0.81327 0.90199 0.75364 1.90748 1.55144 1.45803 1.48589 1.22116 0.96656 0.95003 1.05984 0.85380 1.22816 0.98948 1.02696 0.90438 1.22796 0.89087 1.00984 1.01203 1.22387 0.82812 0.89006 1.01766 1.50290 1.05130 1.14452 1.69675 1.21812 0.78854 0.91069 0.74807 1.90539 1.74123 1.27223 1.50267 1.19192 0.93359 0.91901 0.98187 1.21232 0.89910 0.98908 1.44514 0.90644 1.25018 0.99533 0.94827 0.95314 1.69979 1.32560 1.05355 1.46096 0.86371 0.84069 0.79173 0.77491 1.19480 1.21034 1.21026 1.22446 0.82265 0.95512 0.97754 0.92447 0.90893 0.90346 0.91344 0.89900 0.91335 0.88201 0.88204 0.75043 0.87599 0.87120 0.89366 0.89702 0.93485 0.93489 0.92995 0.90297 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 10.41 59.85 0.62 0.99 16 2 N -0.62 -3.41 3.27 -189.52 -0.62 -4.03 16 3 C 0.07 0.19 9.74 59.84 0.58 0.77 16 4 C 0.51 4.03 7.74 -10.98 -0.09 3.94 16 5 O -0.54 -5.87 15.25 5.56 0.08 -5.79 16 6 C 0.10 0.76 4.97 -5.19 -0.03 0.74 16 7 N -0.72 -6.32 5.53 -61.47 -0.34 -6.66 16 8 C 0.55 6.00 7.61 -10.98 -0.08 5.91 16 9 O -0.53 -7.51 15.13 5.56 0.08 -7.42 16 10 C -0.18 -1.71 6.19 -92.04 -0.57 -2.28 16 11 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.11 -1.14 10.24 -27.00 -0.28 -1.42 16 13 C -0.14 -1.79 3.04 -155.02 -0.47 -2.26 16 14 C 0.16 2.65 7.04 -3.22 -0.02 2.63 16 15 N -0.66 -12.78 3.61 -181.76 -0.66 -13.44 16 16 C 0.54 13.44 8.05 -10.98 -0.09 13.35 16 17 O -0.55 -15.23 16.19 5.56 0.09 -15.14 16 18 C 0.01 0.35 5.20 -29.03 -0.15 0.19 16 19 C -0.51 -15.35 8.92 -34.44 -0.31 -15.65 16 20 H 0.08 2.37 6.75 -52.48 -0.35 2.02 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 23 Si 0.90 22.71 29.54 -169.99 -5.02 17.69 16 24 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.14 2.11 8.85 -3.23 -0.03 2.08 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.15 7.92 -51.93 -0.41 -0.26 16 30 H 0.08 0.45 7.42 -51.93 -0.39 0.07 16 31 H 0.07 0.15 7.85 -51.93 -0.41 -0.26 16 32 H 0.08 0.08 7.79 -51.93 -0.40 -0.33 16 33 H 0.07 0.15 7.85 -51.92 -0.41 -0.25 16 34 H 0.10 0.68 7.86 -51.93 -0.41 0.27 16 35 H 0.10 0.68 7.87 -51.93 -0.41 0.27 16 36 H 0.41 3.32 7.44 -40.82 -0.30 3.01 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.40 8.01 -51.93 -0.42 0.99 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -38.65 384.94 -7.69 -46.34 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.85 Total: -1.39 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.00 Total: 10.49 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.88 Total: -50.59 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: 0.26 Total: -28.34 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.65 -7.69 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.026 kcal (2) G-P(sol) polarization free energy of solvation -38.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds