Wall clock time and date at job start Fri Apr 10 2020 18:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46490 * 120.00322 * 2 1 4 4 C 1.34780 * 119.99566 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.46992 * 179.97438 * 6 4 2 8 8 C 1.34779 * 119.99872 * 179.97438 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 H 1.08999 * 115.56233 * 34.36038 * 10 8 7 12 12 C 1.53152 * 117.51600 * 248.61041 * 10 8 7 13 13 C 1.52325 * 59.82126 * 252.56255 * 12 10 8 14 14 C 1.53292 * 128.82126 * 117.89611 * 13 12 10 15 15 N 1.47726 * 85.85318 * 116.62300 * 14 13 12 16 16 C 1.34780 * 134.38994 * 204.09214 * 15 14 13 17 17 O 1.21281 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99863 * 0.02562 * 16 15 14 19 19 C 1.50703 * 109.46996 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99897 * 359.97438 * 19 18 16 21 21 C 1.37872 * 120.00281 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00175 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00311 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46896 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47264 * 120.00531 * 23 21 19 26 26 H 1.48499 * 109.47254 * 240.00796 * 23 21 19 27 27 C 1.47714 * 91.21343 * 24.09765 * 15 14 13 28 28 H 1.08997 * 109.47274 * 269.99955 * 1 2 3 29 29 H 1.09000 * 109.47018 * 29.99405 * 1 2 3 30 30 H 1.09000 * 109.47828 * 149.99700 * 1 2 3 31 31 H 1.09000 * 109.47691 * 240.00107 * 3 2 1 32 32 H 1.08998 * 109.47146 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.47121 * 120.00203 * 3 2 1 34 34 H 1.09002 * 109.47060 * 299.99722 * 6 4 2 35 35 H 1.09001 * 109.47380 * 59.99809 * 6 4 2 36 36 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 37 37 H 1.09006 * 117.51695 * 359.97438 * 12 10 8 38 38 H 1.08997 * 117.51741 * 145.12354 * 12 10 8 39 39 H 1.08995 * 113.81131 * 230.85853 * 14 13 12 40 40 H 1.09002 * 113.80529 * 2.38917 * 14 13 12 41 41 H 1.09004 * 109.47129 * 299.99603 * 18 16 15 42 42 H 1.09001 * 109.47569 * 60.00024 * 18 16 15 43 43 H 0.96991 * 120.00520 * 179.97438 * 22 21 19 44 44 H 1.09001 * 113.81059 * 221.66817 * 27 15 14 45 45 H 1.08999 * 113.81477 * 90.14051 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 0.0001 7 7 4.1340 -2.5486 -0.0001 8 6 5.4591 -2.7949 -0.0001 9 8 6.2473 -1.8731 -0.0006 10 6 5.9614 -4.2158 -0.0008 11 1 5.3529 -4.9295 -0.5562 12 6 6.6642 -4.7184 1.2637 13 6 7.4697 -4.4290 0.0036 14 6 8.5862 -3.4003 -0.2081 15 7 9.4638 -4.5627 -0.4550 16 6 10.7909 -4.7789 -0.3620 17 8 11.2487 -5.8677 -0.6372 18 6 11.7058 -3.6676 0.0841 19 6 13.1281 -4.1653 0.1039 20 1 13.3475 -5.1846 -0.1779 21 6 14.1493 -3.3196 0.4818 22 7 13.8821 -2.0785 0.8255 23 14 15.9122 -3.9368 0.5070 24 1 15.9449 -5.3589 0.0809 25 1 16.7350 -3.1227 -0.4232 26 1 16.4582 -3.8192 1.8830 27 6 8.3062 -5.3935 -0.8448 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3635 -0.8899 -0.5139 31 1 2.8242 1.3264 -0.8900 32 1 1.4892 2.0971 0.0005 33 1 2.8242 1.3263 0.8900 34 1 4.0095 -0.6530 -0.8895 35 1 4.0089 -0.6541 0.8905 36 1 3.5037 -3.2859 -0.0008 37 1 6.7635 -4.0211 2.0956 38 1 6.5185 -5.7628 1.5394 39 1 8.4400 -2.7657 -1.0822 40 1 8.8426 -2.8382 0.6899 41 1 11.6234 -2.8293 -0.6077 42 1 11.4212 -3.3421 1.0848 43 1 14.6004 -1.4837 1.0917 44 1 8.3410 -6.4092 -0.4508 45 1 8.0762 -5.3560 -1.9095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:09 Heat of formation + Delta-G solvation = -61.455841 kcal Electronic energy + Delta-G solvation = -26422.690244 eV Core-core repulsion = 22441.797725 eV Total energy + Delta-G solvation = -3980.892519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80578 -41.12554 -40.19826 -38.85838 -36.72040 -35.57518 -35.45725 -35.13083 -31.40837 -30.44069 -28.70732 -28.28849 -27.27167 -26.62592 -25.18654 -24.47350 -21.61272 -20.89253 -20.27993 -19.55991 -18.70404 -18.50460 -17.81314 -17.58138 -17.31002 -17.21144 -16.86975 -16.77253 -16.23174 -15.99353 -15.84987 -15.21941 -15.04193 -14.82117 -14.44165 -14.27192 -14.11746 -13.94286 -13.69741 -13.62290 -13.49773 -13.30480 -13.26800 -13.02814 -12.82680 -12.77090 -12.60893 -12.06306 -11.94554 -11.69058 -11.44578 -11.24542 -11.13106 -10.92192 -10.65720 -10.45540 -10.22488 -9.77230 -9.64325 -8.27213 -6.36321 1.36385 1.38512 1.39232 1.42242 1.54885 1.64821 1.79370 1.96502 2.28909 2.41931 2.79963 3.07000 3.15784 3.34782 3.41280 3.79243 3.96294 3.99439 4.24394 4.25524 4.32633 4.36303 4.44145 4.49807 4.50650 4.54205 4.63812 4.72560 4.76625 4.85107 4.91529 4.91819 4.94751 4.95567 5.03139 5.17743 5.20202 5.24749 5.40782 5.70591 6.05009 6.17160 6.45716 6.68382 6.81447 6.92430 7.17703 7.30401 7.40706 8.85545 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.002057 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.904092 B =13607.677959 C =14562.682094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.616 5.616 3 C 0.065 3.935 4 C 0.507 3.493 5 O -0.573 6.573 6 C 0.103 3.897 7 N -0.710 5.710 8 C 0.545 3.455 9 O -0.566 6.566 10 C -0.147 4.147 11 H 0.165 0.835 12 C -0.102 4.102 13 C -0.150 4.150 14 C 0.158 3.842 15 N -0.659 5.659 16 C 0.540 3.460 17 O -0.586 6.586 18 C 0.018 3.982 19 C -0.539 4.539 20 H 0.057 0.943 21 C 0.007 3.993 22 N -0.925 5.925 23 Si 0.971 3.029 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.145 3.855 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.418 0.582 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.268 0.732 44 H 0.086 0.914 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.653 6.739 -0.774 33.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.348 5.348 3 C -0.077 4.077 4 C 0.295 3.705 5 O -0.453 6.453 6 C -0.024 4.024 7 N -0.365 5.365 8 C 0.332 3.668 9 O -0.444 6.444 10 C -0.169 4.169 11 H 0.182 0.818 12 C -0.139 4.139 13 C -0.151 4.151 14 C 0.036 3.964 15 N -0.395 5.395 16 C 0.332 3.668 17 O -0.467 6.467 18 C -0.021 4.021 19 C -0.577 4.577 20 H 0.075 0.925 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.795 3.205 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.195 1.195 27 C 0.024 3.976 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.256 0.744 37 H 0.120 0.880 38 H 0.155 0.845 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -31.909 6.460 -0.848 32.568 hybrid contribution 0.676 -0.116 -0.022 0.686 sum -31.233 6.344 -0.870 31.883 Atomic orbital electron populations 1.21842 0.77832 1.03919 1.02575 1.47831 1.08135 1.06672 1.72198 1.22179 0.98190 0.84085 1.03211 1.20676 0.90162 0.83820 0.75860 1.90685 1.70553 1.32214 1.51857 1.21144 0.90142 0.85451 1.05642 1.45596 1.07000 1.08683 1.75247 1.19903 0.81651 0.90322 0.74936 1.90747 1.56135 1.46959 1.50587 1.22221 0.94150 0.95048 1.05465 0.81758 1.23015 0.96916 1.04220 0.89760 1.22414 0.90365 0.98484 1.03859 1.22508 0.83643 0.89021 1.01270 1.50206 1.04417 1.17142 1.67784 1.21139 0.80748 0.89692 0.75193 1.90496 1.75608 1.28098 1.52451 1.18964 0.93474 0.92495 0.97163 1.21404 0.91909 0.98464 1.45921 0.92515 1.25896 1.04008 0.94920 0.94317 1.70062 1.34291 1.06265 1.45889 0.85304 0.78432 0.78386 0.78342 1.19817 1.19545 1.19485 1.22726 0.79723 0.95694 0.99448 0.92085 0.88188 0.92072 0.90739 0.87760 0.90843 0.87454 0.87547 0.74369 0.88033 0.84483 0.89190 0.91191 0.94885 0.94796 0.92280 0.89524 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.41 127.77 1.33 1.91 16 2 N -0.62 -5.80 3.27 -871.91 -2.85 -8.65 16 3 C 0.07 0.20 9.74 127.77 1.24 1.44 16 4 C 0.51 7.44 7.74 87.66 0.68 8.12 16 5 O -0.57 -12.15 15.25 -3.03 -0.05 -12.20 16 6 C 0.10 1.38 4.97 85.63 0.43 1.81 16 7 N -0.71 -11.15 5.53 -466.78 -2.58 -13.73 16 8 C 0.54 10.92 7.61 87.66 0.67 11.59 16 9 O -0.57 -15.67 15.13 -3.02 -0.05 -15.72 16 10 C -0.15 -2.42 6.19 -11.71 -0.07 -2.50 16 11 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.10 -1.81 10.24 30.42 0.31 -1.50 16 13 C -0.15 -3.58 3.04 -52.39 -0.16 -3.74 16 14 C 0.16 5.17 7.04 86.24 0.61 5.77 16 15 N -0.66 -26.00 3.61 -847.35 -3.06 -29.06 16 16 C 0.54 27.83 8.05 87.66 0.71 28.53 16 17 O -0.59 -33.84 16.19 -3.03 -0.05 -33.89 16 18 C 0.02 1.05 5.20 29.10 0.15 1.20 16 19 C -0.54 -33.79 8.92 25.60 0.23 -33.56 16 20 H 0.06 3.71 6.75 -2.91 -0.02 3.69 16 21 C 0.01 0.42 5.46 84.65 0.46 0.89 16 22 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 23 Si 0.97 47.00 29.54 68.60 2.03 49.03 16 24 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.15 4.06 8.85 86.24 0.76 4.82 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.16 7.92 -2.39 -0.02 0.14 16 30 H 0.06 0.67 7.42 -2.39 -0.02 0.66 16 31 H 0.07 0.17 7.85 -2.39 -0.02 0.15 16 32 H 0.10 -0.11 7.79 -2.39 -0.02 -0.12 16 33 H 0.07 0.19 7.85 -2.38 -0.02 0.17 16 34 H 0.11 1.30 7.86 -2.39 -0.02 1.28 16 35 H 0.11 1.31 7.87 -2.39 -0.02 1.29 16 36 H 0.42 5.84 7.44 -92.71 -0.69 5.15 16 37 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 2.91 8.01 -2.39 -0.02 2.89 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 41 H 0.03 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.03 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 44 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -86.64 384.94 1.34 -85.31 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.32 Total: 10.51 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 7.34 Total: 24.78 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -8.21 Total: -107.82 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -0.14 Total: -61.81 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -86.64 1.34 -85.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.851 kcal (2) G-P(sol) polarization free energy of solvation -86.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds