Wall clock time and date at job start Fri Apr 10 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00245 * 2 1 4 4 C 1.34783 * 120.00067 * 180.02562 * 2 1 3 5 5 O 1.21282 * 119.99479 * 359.97438 * 4 2 1 6 6 C 1.50702 * 120.00284 * 180.02562 * 4 2 1 7 7 N 1.46497 * 109.47104 * 179.97438 * 6 4 2 8 8 C 1.34777 * 119.99866 * 179.97438 * 7 6 4 9 9 O 1.21279 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00116 * 180.02562 * 8 7 6 11 11 H 1.08999 * 115.58331 * 325.60153 * 10 8 7 12 12 C 1.53153 * 117.51901 * 111.39174 * 10 8 7 13 13 C 1.52324 * 117.51752 * 179.81591 * 10 8 7 14 14 C 1.53290 * 128.81902 * 10.45337 * 13 10 8 15 15 N 1.47732 * 85.85453 * 116.62630 * 14 13 10 16 16 C 1.34773 * 134.39285 * 204.06683 * 15 14 13 17 17 O 1.21277 * 119.99979 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00310 * 0.03915 * 16 15 14 19 19 C 1.50696 * 109.47533 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99889 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00167 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99998 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00096 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46997 * 89.99734 * 23 21 19 25 25 H 1.48493 * 109.47285 * 210.00044 * 23 21 19 26 26 H 1.48501 * 109.46945 * 330.00008 * 23 21 19 27 27 C 1.47720 * 91.21140 * 24.09417 * 15 14 13 28 28 H 1.09006 * 109.47002 * 270.00042 * 1 2 3 29 29 H 1.09001 * 109.47115 * 29.99792 * 1 2 3 30 30 H 1.09003 * 109.47415 * 150.00219 * 1 2 3 31 31 H 1.09002 * 109.47079 * 240.00250 * 3 2 1 32 32 H 1.08998 * 109.46856 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46952 * 119.99816 * 3 2 1 34 34 H 1.08999 * 109.46865 * 59.99573 * 6 4 2 35 35 H 1.08998 * 109.46852 * 299.99897 * 6 4 2 36 36 H 0.96998 * 119.99956 * 0.02562 * 7 6 4 37 37 H 1.09003 * 117.51703 * 359.97438 * 12 10 8 38 38 H 1.09001 * 117.51992 * 214.88024 * 12 10 8 39 39 H 1.08996 * 113.81250 * 230.86123 * 14 13 10 40 40 H 1.09004 * 113.80760 * 2.39396 * 14 13 10 41 41 H 1.09001 * 109.47404 * 300.01341 * 18 16 15 42 42 H 1.09007 * 109.47036 * 60.00480 * 18 16 15 43 43 H 0.97000 * 119.99880 * 180.02562 * 22 21 19 44 44 H 1.08998 * 113.81452 * 221.67446 * 27 15 14 45 45 H 1.09005 * 113.91833 * 90.15544 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1673 0.0001 7 7 4.1342 -2.5485 -0.0001 8 6 5.4593 -2.7948 -0.0001 9 8 6.2474 -1.8730 -0.0006 10 6 5.9616 -4.2156 -0.0008 11 1 5.3536 -4.9301 0.5542 12 6 6.6646 -4.7170 -1.2657 13 6 7.4698 -4.4288 -0.0052 14 6 8.5863 -3.4002 0.2076 15 7 8.9312 -4.1829 1.4121 16 6 9.5639 -3.9036 2.5688 17 8 9.7094 -4.7699 3.4050 18 6 10.0904 -2.5147 2.8234 19 6 10.7501 -2.4679 4.1775 20 1 10.7850 -3.3553 4.7922 21 6 11.3090 -1.2922 4.6318 22 7 11.2669 -0.2117 3.8831 23 14 12.1261 -1.2340 6.3106 24 1 13.5650 -1.5746 6.1728 25 1 11.9929 0.1314 6.8788 26 1 11.4700 -2.2125 7.2146 27 6 8.3063 -5.3941 0.8423 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.8242 1.3264 -0.8900 32 1 1.4892 2.0972 0.0005 33 1 2.8242 1.3264 0.8900 34 1 4.0089 -0.6540 0.8905 35 1 4.0096 -0.6529 -0.8894 36 1 3.5038 -3.2857 -0.0008 37 1 6.7632 -4.0191 -2.0973 38 1 6.5189 -5.7611 -1.5426 39 1 9.3552 -3.4193 -0.5647 40 1 8.2235 -2.3955 0.4246 41 1 10.8192 -2.2559 2.0553 42 1 9.2654 -1.8027 2.7960 43 1 11.6605 0.6153 4.2025 44 1 7.7218 -5.9677 1.5616 45 1 8.9900 -6.0119 0.2599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:12 Heat of formation + Delta-G solvation = -31.035276 kcal Electronic energy + Delta-G solvation = -26882.143627 eV Core-core repulsion = 22902.570243 eV Total energy + Delta-G solvation = -3979.573384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81120 -40.22556 -38.89652 -37.23267 -36.11593 -34.64261 -34.27623 -32.83787 -29.84060 -29.24736 -27.97508 -26.88461 -25.95926 -25.91701 -23.71111 -23.00208 -20.70198 -20.08903 -19.12782 -18.30560 -17.71962 -17.01327 -16.68525 -16.49251 -16.35183 -15.71380 -15.47461 -15.33342 -15.13073 -14.90015 -14.49794 -13.94127 -13.89298 -13.56323 -13.39246 -13.24171 -13.18166 -13.10552 -12.68558 -12.64534 -12.45095 -12.27390 -12.08897 -11.83030 -11.12951 -10.86428 -10.71015 -10.61048 -10.53726 -10.42022 -10.20341 -9.88461 -9.74948 -9.37211 -9.23897 -9.17426 -8.52618 -8.36370 -8.02468 -5.97729 -3.97259 2.06776 2.29287 2.38338 2.99705 3.39257 3.40267 3.44368 3.52964 3.63873 3.92703 3.94623 4.18658 4.41247 4.54049 4.57169 4.69097 4.78394 4.81828 4.87270 4.94785 5.07420 5.15488 5.24362 5.33351 5.36603 5.39805 5.42591 5.56509 5.63677 5.69278 5.79388 5.86072 5.95641 6.00079 6.11152 6.35721 6.73435 6.78248 7.29923 7.33595 7.45809 7.56863 8.03751 8.09689 8.23316 8.55945 9.13054 9.31010 9.66897 11.14629 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.002823 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.131215 B = 9914.763650 C =11705.671600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.619 5.619 3 C 0.072 3.928 4 C 0.510 3.490 5 O -0.537 6.537 6 C 0.103 3.897 7 N -0.720 5.720 8 C 0.547 3.453 9 O -0.523 6.523 10 C -0.159 4.159 11 H 0.128 0.872 12 C -0.128 4.128 13 C -0.139 4.139 14 C 0.143 3.857 15 N -0.653 5.653 16 C 0.541 3.459 17 O -0.547 6.547 18 C 0.014 3.986 19 C -0.507 4.507 20 H 0.074 0.926 21 C 0.054 3.946 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.272 1.272 27 C 0.142 3.858 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.411 0.589 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 0.139 -16.016 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.353 5.353 3 C -0.071 4.071 4 C 0.298 3.702 5 O -0.414 6.414 6 C -0.024 4.024 7 N -0.376 5.376 8 C 0.334 3.666 9 O -0.399 6.399 10 C -0.180 4.180 11 H 0.146 0.854 12 C -0.166 4.166 13 C -0.141 4.141 14 C 0.020 3.980 15 N -0.392 5.392 16 C 0.335 3.665 17 O -0.423 6.423 18 C -0.025 4.025 19 C -0.546 4.546 20 H 0.092 0.908 21 C -0.146 4.146 22 N -0.540 5.540 23 Si 0.729 3.271 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.197 1.197 27 C 0.019 3.981 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.308 0.056 -15.309 26.237 hybrid contribution -0.051 0.016 0.828 0.830 sum -21.359 0.072 -14.481 25.805 Atomic orbital electron populations 1.21720 0.78567 1.03337 1.02190 1.47678 1.07447 1.06423 1.73782 1.21957 0.97585 0.84790 1.02765 1.20606 0.90097 0.83571 0.75932 1.90697 1.69983 1.30892 1.49832 1.21062 0.90251 0.86058 1.05074 1.45651 1.07567 1.07779 1.76624 1.19684 0.81395 0.90096 0.75436 1.90711 1.54871 1.45807 1.48461 1.21988 0.95700 0.95170 1.05146 0.85442 1.22870 1.00648 1.02508 0.90620 1.22661 0.90654 1.00947 0.99796 1.22698 0.91749 0.97573 0.85971 1.50232 1.59862 1.12349 1.16774 1.21807 0.74100 0.92770 0.77864 1.90533 1.57136 1.50172 1.44499 1.19171 0.97388 0.86787 0.99177 1.21189 1.35469 0.96916 1.00995 0.90763 1.25010 0.96320 0.95451 0.97859 1.69981 1.45814 1.00827 1.37346 0.86434 0.79685 0.77060 0.83933 1.20618 1.21284 1.19700 1.22466 0.92470 0.89823 0.93319 0.92445 0.90920 0.90386 0.91366 0.89918 0.91193 0.88026 0.88209 0.75112 0.87711 0.87211 0.89909 0.87470 0.93577 0.93428 0.92978 0.90588 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.41 59.85 0.62 1.09 16 2 N -0.62 -4.30 3.27 -189.51 -0.62 -4.92 16 3 C 0.07 0.30 9.74 59.85 0.58 0.88 16 4 C 0.51 4.81 7.74 -10.98 -0.09 4.73 16 5 O -0.54 -6.62 15.25 5.56 0.08 -6.53 16 6 C 0.10 0.95 4.97 -5.19 -0.03 0.92 16 7 N -0.72 -7.58 5.53 -61.48 -0.34 -7.92 16 8 C 0.55 7.00 7.61 -10.99 -0.08 6.91 16 9 O -0.52 -8.49 14.15 5.56 0.08 -8.41 16 10 C -0.16 -1.76 6.19 -92.04 -0.57 -2.33 16 11 H 0.13 1.19 8.14 -51.93 -0.42 0.76 16 12 C -0.13 -1.15 10.24 -27.00 -0.28 -1.42 16 13 C -0.14 -1.79 3.03 -155.02 -0.47 -2.26 16 14 C 0.14 2.32 8.13 -3.22 -0.03 2.29 16 15 N -0.65 -12.94 3.61 -181.73 -0.66 -13.60 16 16 C 0.54 13.70 8.05 -10.99 -0.09 13.61 16 17 O -0.55 -15.48 16.18 5.56 0.09 -15.39 16 18 C 0.01 0.38 5.20 -29.04 -0.15 0.23 16 19 C -0.51 -15.53 8.92 -34.44 -0.31 -15.83 16 20 H 0.07 2.36 6.75 -52.48 -0.35 2.00 16 21 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 23 Si 0.90 22.88 29.54 -169.99 -5.02 17.86 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.14 2.10 8.85 -3.23 -0.03 2.07 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.23 7.92 -51.93 -0.41 -0.19 16 30 H 0.08 0.53 7.42 -51.93 -0.39 0.15 16 31 H 0.07 0.24 7.85 -51.93 -0.41 -0.17 16 32 H 0.08 0.19 7.79 -51.93 -0.40 -0.21 16 33 H 0.07 0.30 7.85 -51.93 -0.41 -0.11 16 34 H 0.10 0.96 7.87 -51.93 -0.41 0.55 16 35 H 0.10 0.80 7.86 -51.93 -0.41 0.40 16 36 H 0.41 3.96 7.44 -40.82 -0.30 3.66 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.11 1.98 5.93 -51.93 -0.31 1.67 16 41 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.05 1.36 8.14 -51.92 -0.42 0.94 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -39.33 382.96 -7.62 -46.95 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.74 Total: 0.47 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -1.00 Total: 12.42 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.88 Total: -53.13 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: 0.25 Total: -30.33 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.33 -7.62 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.912 kcal (2) G-P(sol) polarization free energy of solvation -39.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds