Wall clock time and date at job start Fri Apr 10 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00245 * 2 1 4 4 C 1.34783 * 120.00067 * 180.02562 * 2 1 3 5 5 O 1.21282 * 119.99479 * 359.97438 * 4 2 1 6 6 C 1.50702 * 120.00284 * 180.02562 * 4 2 1 7 7 N 1.46497 * 109.47104 * 179.97438 * 6 4 2 8 8 C 1.34777 * 119.99866 * 179.97438 * 7 6 4 9 9 O 1.21279 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00116 * 180.02562 * 8 7 6 11 11 H 1.08999 * 115.58331 * 325.60153 * 10 8 7 12 12 C 1.53153 * 117.51901 * 111.39174 * 10 8 7 13 13 C 1.52324 * 117.51752 * 179.81591 * 10 8 7 14 14 C 1.53290 * 128.81902 * 10.45337 * 13 10 8 15 15 N 1.47732 * 85.85453 * 116.62630 * 14 13 10 16 16 C 1.34773 * 134.39285 * 204.06683 * 15 14 13 17 17 O 1.21277 * 119.99979 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00310 * 0.03915 * 16 15 14 19 19 C 1.50696 * 109.47533 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99889 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00167 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99998 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00096 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46997 * 89.99734 * 23 21 19 25 25 H 1.48493 * 109.47285 * 210.00044 * 23 21 19 26 26 H 1.48501 * 109.46945 * 330.00008 * 23 21 19 27 27 C 1.47720 * 91.21140 * 24.09417 * 15 14 13 28 28 H 1.09006 * 109.47002 * 270.00042 * 1 2 3 29 29 H 1.09001 * 109.47115 * 29.99792 * 1 2 3 30 30 H 1.09003 * 109.47415 * 150.00219 * 1 2 3 31 31 H 1.09002 * 109.47079 * 240.00250 * 3 2 1 32 32 H 1.08998 * 109.46856 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46952 * 119.99816 * 3 2 1 34 34 H 1.08999 * 109.46865 * 59.99573 * 6 4 2 35 35 H 1.08998 * 109.46852 * 299.99897 * 6 4 2 36 36 H 0.96998 * 119.99956 * 0.02562 * 7 6 4 37 37 H 1.09003 * 117.51703 * 359.97438 * 12 10 8 38 38 H 1.09001 * 117.51992 * 214.88024 * 12 10 8 39 39 H 1.08996 * 113.81250 * 230.86123 * 14 13 10 40 40 H 1.09004 * 113.80760 * 2.39396 * 14 13 10 41 41 H 1.09001 * 109.47404 * 300.01341 * 18 16 15 42 42 H 1.09007 * 109.47036 * 60.00480 * 18 16 15 43 43 H 0.97000 * 119.99880 * 180.02562 * 22 21 19 44 44 H 1.08998 * 113.81452 * 221.67446 * 27 15 14 45 45 H 1.09005 * 113.91833 * 90.15544 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1673 0.0001 7 7 4.1342 -2.5485 -0.0001 8 6 5.4593 -2.7948 -0.0001 9 8 6.2474 -1.8730 -0.0006 10 6 5.9616 -4.2156 -0.0008 11 1 5.3536 -4.9301 0.5542 12 6 6.6646 -4.7170 -1.2657 13 6 7.4698 -4.4288 -0.0052 14 6 8.5863 -3.4002 0.2076 15 7 8.9312 -4.1829 1.4121 16 6 9.5639 -3.9036 2.5688 17 8 9.7094 -4.7699 3.4050 18 6 10.0904 -2.5147 2.8234 19 6 10.7501 -2.4679 4.1775 20 1 10.7850 -3.3553 4.7922 21 6 11.3090 -1.2922 4.6318 22 7 11.2669 -0.2117 3.8831 23 14 12.1261 -1.2340 6.3106 24 1 13.5650 -1.5746 6.1728 25 1 11.9929 0.1314 6.8788 26 1 11.4700 -2.2125 7.2146 27 6 8.3063 -5.3941 0.8423 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.8242 1.3264 -0.8900 32 1 1.4892 2.0972 0.0005 33 1 2.8242 1.3264 0.8900 34 1 4.0089 -0.6540 0.8905 35 1 4.0096 -0.6529 -0.8894 36 1 3.5038 -3.2857 -0.0008 37 1 6.7632 -4.0191 -2.0973 38 1 6.5189 -5.7611 -1.5426 39 1 9.3552 -3.4193 -0.5647 40 1 8.2235 -2.3955 0.4246 41 1 10.8192 -2.2559 2.0553 42 1 9.2654 -1.8027 2.7960 43 1 11.6605 0.6153 4.2025 44 1 7.7218 -5.9677 1.5616 45 1 8.9900 -6.0119 0.2599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:11 Heat of formation + Delta-G solvation = -61.137221 kcal Electronic energy + Delta-G solvation = -26883.448945 eV Core-core repulsion = 22902.570243 eV Total energy + Delta-G solvation = -3980.878702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83577 -41.14034 -40.19123 -38.84536 -36.75132 -35.58541 -35.48505 -35.14027 -31.41290 -30.48189 -28.74132 -28.29057 -27.22980 -26.64551 -25.20465 -24.42478 -21.62989 -20.89040 -20.38322 -19.61433 -18.69265 -18.50265 -17.77878 -17.59940 -17.35410 -17.18243 -16.89213 -16.75501 -16.29587 -16.02928 -15.92139 -15.27289 -14.98351 -14.80222 -14.47161 -14.30515 -14.13027 -13.94213 -13.74395 -13.54362 -13.43435 -13.34406 -13.24982 -13.15555 -12.84921 -12.78849 -12.61193 -12.05916 -11.90319 -11.67859 -11.47665 -11.23075 -11.15813 -10.88910 -10.66501 -10.39501 -10.27809 -9.80547 -9.60249 -8.27870 -6.37448 1.33198 1.36723 1.39423 1.42294 1.51894 1.63893 1.80031 1.96447 2.24347 2.40746 2.80892 3.06001 3.17732 3.31004 3.39855 3.82197 3.96832 4.01079 4.19436 4.22463 4.30718 4.38287 4.42581 4.47907 4.52937 4.54483 4.64009 4.73447 4.78338 4.87526 4.89274 4.92504 4.95626 4.98666 5.10272 5.17703 5.19859 5.28097 5.38187 5.69261 6.04484 6.13051 6.41889 6.68371 6.81443 6.88357 7.15906 7.29475 7.40903 8.84854 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.002823 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.131215 B = 9914.763650 C =11705.671600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.615 5.615 3 C 0.065 3.935 4 C 0.508 3.492 5 O -0.572 6.572 6 C 0.102 3.898 7 N -0.711 5.711 8 C 0.541 3.459 9 O -0.566 6.566 10 C -0.167 4.167 11 H 0.149 0.851 12 C -0.081 4.081 13 C -0.150 4.150 14 C 0.135 3.865 15 N -0.658 5.658 16 C 0.538 3.462 17 O -0.589 6.589 18 C 0.022 3.978 19 C -0.540 4.540 20 H 0.056 0.944 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.144 3.856 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.417 0.583 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.026 0.974 43 H 0.269 0.731 44 H 0.077 0.923 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.852 -0.197 -17.326 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.348 5.348 3 C -0.077 4.077 4 C 0.296 3.704 5 O -0.452 6.452 6 C -0.025 4.025 7 N -0.366 5.366 8 C 0.329 3.671 9 O -0.445 6.445 10 C -0.187 4.187 11 H 0.167 0.833 12 C -0.119 4.119 13 C -0.151 4.151 14 C 0.013 3.987 15 N -0.394 5.394 16 C 0.330 3.670 17 O -0.469 6.469 18 C -0.018 4.018 19 C -0.578 4.578 20 H 0.074 0.926 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.195 1.195 26 H -0.198 1.198 27 C 0.023 3.977 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.256 0.744 37 H 0.132 0.868 38 H 0.166 0.834 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.427 -0.252 -16.696 27.961 hybrid contribution 0.168 0.219 1.119 1.153 sum -22.259 -0.033 -15.577 27.168 Atomic orbital electron populations 1.21859 0.77651 1.04101 1.02535 1.47831 1.08227 1.06585 1.72150 1.22182 0.98226 0.84157 1.03122 1.20617 0.90006 0.83898 0.75880 1.90675 1.70479 1.32180 1.51876 1.21129 0.90401 0.85507 1.05428 1.45618 1.07063 1.08611 1.75352 1.20057 0.81644 0.90560 0.74815 1.90708 1.55907 1.47162 1.50695 1.22204 0.94532 0.94640 1.07366 0.83290 1.23089 0.95186 1.04766 0.88856 1.22307 0.90729 0.98449 1.03633 1.22896 0.93998 0.97055 0.84708 1.50183 1.57463 1.15797 1.15973 1.21124 0.74981 0.91330 0.79571 1.90485 1.59337 1.50641 1.46484 1.18913 0.96260 0.88642 0.97965 1.21364 1.37226 0.96917 1.02327 0.92600 1.25905 0.96417 0.94713 1.02055 1.70070 1.45887 1.01382 1.39140 0.85361 0.78883 0.77685 0.78582 1.19249 1.19494 1.19841 1.22787 0.92834 0.88698 0.93349 0.92304 0.87928 0.91852 0.90451 0.87518 0.91417 0.88516 0.86995 0.74439 0.86840 0.83355 0.87783 0.90211 0.94800 0.95561 0.92249 0.90483 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.41 127.77 1.33 2.12 16 2 N -0.62 -7.89 3.27 -871.87 -2.85 -10.75 16 3 C 0.06 0.44 9.74 127.77 1.24 1.68 16 4 C 0.51 9.39 7.74 87.66 0.68 10.07 16 5 O -0.57 -14.05 15.25 -3.04 -0.05 -14.09 16 6 C 0.10 1.86 4.97 85.63 0.43 2.28 16 7 N -0.71 -14.53 5.53 -466.80 -2.58 -17.11 16 8 C 0.54 13.49 7.61 87.66 0.67 14.15 16 9 O -0.57 -18.69 14.15 -3.02 -0.04 -18.73 16 10 C -0.17 -3.30 6.19 -11.71 -0.07 -3.37 16 11 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 12 C -0.08 -1.11 10.24 30.42 0.31 -0.80 16 13 C -0.15 -3.54 3.03 -52.39 -0.16 -3.70 16 14 C 0.14 4.39 8.13 86.24 0.70 5.09 16 15 N -0.66 -26.43 3.61 -847.27 -3.06 -29.49 16 16 C 0.54 28.40 8.05 87.66 0.71 29.11 16 17 O -0.59 -34.66 16.18 -3.02 -0.05 -34.70 16 18 C 0.02 1.26 5.20 29.10 0.15 1.41 16 19 C -0.54 -34.45 8.92 25.60 0.23 -34.22 16 20 H 0.06 3.71 6.75 -2.91 -0.02 3.69 16 21 C 0.01 0.46 5.46 84.65 0.46 0.93 16 22 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 23 Si 0.97 47.45 29.54 68.60 2.03 49.47 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.14 4.01 8.85 86.24 0.76 4.78 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.10 0.39 7.92 -2.39 -0.02 0.37 16 30 H 0.06 0.83 7.42 -2.39 -0.02 0.82 16 31 H 0.08 0.41 7.85 -2.39 -0.02 0.39 16 32 H 0.11 0.22 7.79 -2.39 -0.02 0.21 16 33 H 0.07 0.52 7.85 -2.39 -0.02 0.50 16 34 H 0.10 1.86 7.87 -2.39 -0.02 1.85 16 35 H 0.11 1.75 7.86 -2.39 -0.02 1.73 16 36 H 0.42 7.64 7.44 -92.71 -0.69 6.95 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.08 3.08 5.93 -2.38 -0.01 3.06 16 41 H 0.03 2.01 8.14 -2.39 -0.02 2.00 16 42 H 0.03 1.61 8.14 -2.38 -0.02 1.60 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -89.90 382.96 1.44 -88.46 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.32 Total: 14.53 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 7.44 Total: 29.53 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -8.21 Total: -114.46 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -0.14 Total: -67.53 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -89.90 1.44 -88.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.321 kcal (2) G-P(sol) polarization free energy of solvation -89.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds