Wall clock time and date at job start Fri Apr 10 2020 18:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99804 * 2 1 4 4 O 1.21345 * 120.00418 * 0.02562 * 3 2 1 5 5 C 1.49451 * 119.99787 * 180.02562 * 3 2 1 6 6 O 1.21344 * 120.00242 * 0.02562 * 5 3 2 7 7 N 1.34783 * 119.99939 * 180.02562 * 5 3 2 8 8 C 1.47136 * 125.60722 * 359.97438 * 7 5 3 9 9 C 1.54578 * 107.32748 * 180.93339 * 8 7 5 10 10 C 1.53706 * 102.78583 * 20.88001 * 9 8 7 11 11 C 1.53214 * 111.54200 * 206.02085 * 10 9 8 12 12 C 1.54789 * 101.39242 * 261.12585 * 11 10 9 13 13 N 1.46931 * 105.54388 * 335.83123 * 12 11 10 14 14 C 1.46499 * 124.37944 * 196.72375 * 13 12 11 15 15 C 1.53002 * 109.47337 * 89.99727 * 14 13 12 16 16 C 1.50696 * 109.46997 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.34889 * 111.24225 * 16.98976 * 13 12 11 25 25 O 1.21284 * 125.21951 * 178.51097 * 24 13 12 26 26 C 1.47707 * 125.60648 * 179.97438 * 7 5 3 27 27 H 1.09000 * 109.47427 * 59.99364 * 1 2 3 28 28 H 1.08994 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46764 * 299.99429 * 1 2 3 30 30 H 0.96998 * 120.00032 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.87176 * 61.49599 * 8 7 5 32 32 H 1.08998 * 109.98792 * 300.43631 * 8 7 5 33 33 H 1.09002 * 110.75167 * 262.55729 * 9 8 7 34 34 H 1.09004 * 110.90875 * 139.27883 * 9 8 7 35 35 H 1.09005 * 111.03761 * 143.09142 * 11 10 9 36 36 H 1.09002 * 111.06693 * 19.16980 * 11 10 9 37 37 H 1.09001 * 110.23221 * 216.81607 * 12 11 10 38 38 H 1.08999 * 110.23957 * 94.85230 * 12 11 10 39 39 H 1.09005 * 109.47136 * 330.00022 * 14 13 12 40 40 H 1.09002 * 109.47352 * 209.99990 * 14 13 12 41 41 H 1.09005 * 109.46767 * 60.00068 * 15 14 13 42 42 H 1.09002 * 109.47113 * 300.00408 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09004 * 110.39038 * 38.59498 * 26 7 5 45 45 H 1.08995 * 110.39429 * 276.20749 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5322 2.2181 0.0005 5 6 3.6334 1.1672 -0.0006 6 8 4.2401 0.1164 -0.0015 7 7 4.3073 2.3345 -0.0001 8 6 3.6996 3.6745 0.0005 9 6 4.8532 4.7031 -0.0230 10 6 6.0311 3.8808 -0.5697 11 6 7.3765 4.4465 -0.1035 12 6 7.8074 5.2698 -1.3414 13 7 7.1029 4.6659 -2.4806 14 6 7.4629 4.8811 -3.8843 15 6 8.4757 3.8201 -4.3196 16 6 8.8455 4.0412 -5.7636 17 1 8.4028 4.8571 -6.3156 18 6 9.7490 3.2017 -6.3802 19 7 10.0721 3.3949 -7.6403 20 14 10.5141 1.7901 -5.4255 21 1 11.7661 2.2533 -4.7752 22 1 9.5614 1.3206 -4.3875 23 1 10.8229 0.6739 -6.3551 24 6 6.0782 3.8923 -2.0671 25 8 5.3140 3.2955 -2.7957 26 6 5.7773 2.4788 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.9500 -0.8400 -0.0004 31 1 3.1011 3.8095 0.9014 32 1 3.0732 3.7999 -0.8826 33 1 5.0686 5.0650 0.9823 34 1 4.6201 5.5339 -0.6892 35 1 8.0877 3.6462 0.1013 36 1 7.2508 5.0880 0.7688 37 1 8.8857 5.1990 -1.4846 38 1 7.5099 6.3118 -1.2235 39 1 7.9028 5.8719 -3.9988 40 1 6.5694 4.8065 -4.5041 41 1 8.0357 2.8294 -4.2051 42 1 9.3692 3.8947 -3.6997 43 1 10.7081 2.8045 -8.0739 44 1 6.2333 1.7214 -0.6377 45 1 6.1661 2.4055 1.0156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269179759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:14 Heat of formation + Delta-G solvation = -88.553773 kcal Electronic energy + Delta-G solvation = -28174.961353 eV Core-core repulsion = 24192.893780 eV Total energy + Delta-G solvation = -3982.067573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42206 -40.39168 -38.57915 -37.27192 -36.18578 -35.06456 -33.91084 -32.46389 -30.72471 -29.69162 -28.59297 -27.84914 -25.78472 -24.89075 -23.21389 -22.47313 -21.74008 -20.44863 -20.28210 -18.90462 -18.13150 -17.11107 -17.04162 -16.49451 -15.95171 -15.91745 -15.71027 -15.34971 -15.01595 -14.71924 -14.30580 -14.21605 -13.84759 -13.41860 -13.30685 -13.23826 -12.98138 -12.92588 -12.81278 -12.67349 -12.56878 -12.40157 -12.24127 -11.72788 -11.63938 -11.58455 -11.20501 -11.01151 -10.87151 -10.49932 -10.06180 -9.90240 -9.73480 -9.60328 -9.42450 -9.23360 -8.89374 -8.57413 -8.22093 -6.08267 -4.07450 1.28363 2.09577 2.76278 3.07017 3.26860 3.28319 3.36328 3.37406 3.43182 4.05602 4.10813 4.19610 4.34405 4.43021 4.65233 4.82194 4.82614 4.98148 5.10191 5.10665 5.20658 5.25950 5.33748 5.38597 5.44175 5.54186 5.58358 5.64236 5.67789 5.81051 5.86857 5.88610 5.90696 5.98450 6.27701 6.55878 6.76334 6.78735 7.10962 7.12248 7.31107 7.48079 7.55953 7.72849 7.81279 8.44240 8.50690 8.94614 9.53649 11.04793 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003304 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.269768 B = 8473.593380 C = 9323.776802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.708 5.708 3 C 0.511 3.489 4 O -0.513 6.513 5 C 0.523 3.477 6 O -0.524 6.524 7 N -0.580 5.580 8 C 0.110 3.890 9 C -0.109 4.109 10 C -0.116 4.116 11 C -0.117 4.117 12 C 0.101 3.899 13 N -0.615 5.615 14 C 0.137 3.863 15 C -0.024 4.024 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.266 1.266 23 H -0.286 1.286 24 C 0.526 3.474 25 O -0.516 6.516 26 C 0.133 3.867 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.414 0.586 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.020 0.980 42 H 0.013 0.987 43 H 0.264 0.736 44 H 0.088 0.912 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 0.142 23.230 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.361 5.361 3 C 0.292 3.708 4 O -0.388 6.388 5 C 0.306 3.694 6 O -0.401 6.401 7 N -0.314 5.314 8 C -0.012 4.012 9 C -0.147 4.147 10 C -0.121 4.121 11 C -0.155 4.155 12 C -0.023 4.023 13 N -0.348 5.348 14 C 0.017 3.983 15 C -0.062 4.062 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.190 1.190 23 H -0.212 1.212 24 C 0.311 3.689 25 O -0.391 6.391 26 C 0.010 3.990 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.250 0.750 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.118 -0.092 22.581 26.631 hybrid contribution 0.814 -1.122 0.213 1.402 sum -13.304 -1.214 22.794 26.420 Atomic orbital electron populations 1.21667 0.78280 1.02921 1.02804 1.45529 1.08118 1.08845 1.73638 1.20045 0.88376 0.84560 0.77827 1.90749 1.69863 1.30816 1.47398 1.19653 0.87996 0.83214 0.78576 1.90767 1.69727 1.30255 1.49346 1.48159 1.07475 1.05954 1.69769 1.22238 0.95417 0.79902 1.03643 1.22514 0.92500 0.97505 1.02180 1.21639 0.97723 0.96985 0.95723 1.22480 0.94515 1.00402 0.98140 1.22120 0.98439 0.96782 0.84925 1.48717 1.30834 1.47522 1.07758 1.21594 0.99856 1.00072 0.76767 1.19890 0.93950 0.95042 0.97330 1.20952 1.25494 1.15436 0.94159 0.90793 1.24975 0.96122 0.97313 0.94739 1.69905 1.34153 1.38808 1.11022 0.86782 0.79787 0.82503 0.80287 1.20246 1.19047 1.21221 1.19926 0.80843 0.79100 0.88994 1.90737 1.43016 1.44468 1.60876 1.22016 0.79818 0.95721 1.01426 0.91582 0.89995 0.91715 0.74992 0.90141 0.89855 0.89124 0.89282 0.89387 0.88686 0.89906 0.91107 0.90902 0.90518 0.96204 0.96909 0.92616 0.89352 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.71 -6.74 5.71 -67.52 -0.39 -7.12 16 3 C 0.51 6.53 7.86 -11.59 -0.09 6.43 16 4 O -0.51 -7.24 14.12 5.50 0.08 -7.16 16 5 C 0.52 7.52 7.91 -11.58 -0.09 7.43 16 6 O -0.52 -8.51 16.76 5.50 0.09 -8.41 16 7 N -0.58 -7.78 3.34 -171.46 -0.57 -8.35 16 8 C 0.11 1.26 5.46 -2.87 -0.02 1.25 16 9 C -0.11 -1.00 5.94 -25.53 -0.15 -1.15 16 10 C -0.12 -1.36 0.68 -155.37 -0.11 -1.47 16 11 C -0.12 -1.01 6.26 -25.68 -0.16 -1.17 16 12 C 0.10 1.12 7.37 -2.86 -0.02 1.10 16 13 N -0.61 -10.12 2.95 -172.56 -0.51 -10.63 16 14 C 0.14 2.74 5.89 -4.04 -0.02 2.71 16 15 C -0.02 -0.58 4.36 -27.88 -0.12 -0.70 16 16 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 20 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 C 0.53 9.02 6.73 -11.36 -0.08 8.94 16 25 O -0.52 -11.22 17.49 5.55 0.10 -11.12 16 26 C 0.13 1.64 5.74 -3.15 -0.02 1.62 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.41 3.43 8.30 -40.82 -0.34 3.09 16 31 H 0.08 0.80 7.68 -51.93 -0.40 0.41 16 32 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 33 H 0.09 0.55 7.74 -51.93 -0.40 0.15 16 34 H 0.09 0.83 8.00 -51.93 -0.42 0.41 16 35 H 0.09 0.73 7.97 -51.93 -0.41 0.31 16 36 H 0.09 0.51 7.62 -51.93 -0.40 0.11 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.66 7.93 -51.93 -0.41 1.25 16 41 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 42 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.09 1.34 7.95 -51.93 -0.41 0.92 16 45 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -37.71 371.32 -7.06 -44.76 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.89 Total: -0.85 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -0.67 Total: 12.91 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.69 Total: -53.27 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: 0.27 Total: -26.70 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.71 -7.06 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269179759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.791 kcal (2) G-P(sol) polarization free energy of solvation -37.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds