Wall clock time and date at job start Fri Apr 10 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99804 * 2 1 4 4 O 1.21345 * 120.00418 * 0.02562 * 3 2 1 5 5 C 1.49451 * 119.99787 * 180.02562 * 3 2 1 6 6 O 1.21344 * 120.00242 * 0.02562 * 5 3 2 7 7 N 1.34783 * 119.99939 * 180.02562 * 5 3 2 8 8 C 1.47136 * 125.60722 * 359.97438 * 7 5 3 9 9 C 1.54578 * 107.32748 * 180.93339 * 8 7 5 10 10 C 1.53706 * 102.78583 * 20.88001 * 9 8 7 11 11 C 1.53214 * 111.54200 * 206.02085 * 10 9 8 12 12 C 1.54789 * 101.39242 * 261.12585 * 11 10 9 13 13 N 1.46931 * 105.54388 * 335.83123 * 12 11 10 14 14 C 1.46499 * 124.37944 * 196.72375 * 13 12 11 15 15 C 1.53002 * 109.47337 * 89.99727 * 14 13 12 16 16 C 1.50696 * 109.46997 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.34889 * 111.24225 * 16.98976 * 13 12 11 25 25 O 1.21284 * 125.21951 * 178.51097 * 24 13 12 26 26 C 1.47707 * 125.60648 * 179.97438 * 7 5 3 27 27 H 1.09000 * 109.47427 * 59.99364 * 1 2 3 28 28 H 1.08994 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46764 * 299.99429 * 1 2 3 30 30 H 0.96998 * 120.00032 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.87176 * 61.49599 * 8 7 5 32 32 H 1.08998 * 109.98792 * 300.43631 * 8 7 5 33 33 H 1.09002 * 110.75167 * 262.55729 * 9 8 7 34 34 H 1.09004 * 110.90875 * 139.27883 * 9 8 7 35 35 H 1.09005 * 111.03761 * 143.09142 * 11 10 9 36 36 H 1.09002 * 111.06693 * 19.16980 * 11 10 9 37 37 H 1.09001 * 110.23221 * 216.81607 * 12 11 10 38 38 H 1.08999 * 110.23957 * 94.85230 * 12 11 10 39 39 H 1.09005 * 109.47136 * 330.00022 * 14 13 12 40 40 H 1.09002 * 109.47352 * 209.99990 * 14 13 12 41 41 H 1.09005 * 109.46767 * 60.00068 * 15 14 13 42 42 H 1.09002 * 109.47113 * 300.00408 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09004 * 110.39038 * 38.59498 * 26 7 5 45 45 H 1.08995 * 110.39429 * 276.20749 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5322 2.2181 0.0005 5 6 3.6334 1.1672 -0.0006 6 8 4.2401 0.1164 -0.0015 7 7 4.3073 2.3345 -0.0001 8 6 3.6996 3.6745 0.0005 9 6 4.8532 4.7031 -0.0230 10 6 6.0311 3.8808 -0.5697 11 6 7.3765 4.4465 -0.1035 12 6 7.8074 5.2698 -1.3414 13 7 7.1029 4.6659 -2.4806 14 6 7.4629 4.8811 -3.8843 15 6 8.4757 3.8201 -4.3196 16 6 8.8455 4.0412 -5.7636 17 1 8.4028 4.8571 -6.3156 18 6 9.7490 3.2017 -6.3802 19 7 10.0721 3.3949 -7.6403 20 14 10.5141 1.7901 -5.4255 21 1 11.7661 2.2533 -4.7752 22 1 9.5614 1.3206 -4.3875 23 1 10.8229 0.6739 -6.3551 24 6 6.0782 3.8923 -2.0671 25 8 5.3140 3.2955 -2.7957 26 6 5.7773 2.4788 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.9500 -0.8400 -0.0004 31 1 3.1011 3.8095 0.9014 32 1 3.0732 3.7999 -0.8826 33 1 5.0686 5.0650 0.9823 34 1 4.6201 5.5339 -0.6892 35 1 8.0877 3.6462 0.1013 36 1 7.2508 5.0880 0.7688 37 1 8.8857 5.1990 -1.4846 38 1 7.5099 6.3118 -1.2235 39 1 7.9028 5.8719 -3.9988 40 1 6.5694 4.8065 -4.5041 41 1 8.0357 2.8294 -4.2051 42 1 9.3692 3.8947 -3.6997 43 1 10.7081 2.8045 -8.0739 44 1 6.2333 1.7214 -0.6377 45 1 6.1661 2.4055 1.0156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269179759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:13 Heat of formation + Delta-G solvation = -118.803140 kcal Electronic energy + Delta-G solvation = -28176.273064 eV Core-core repulsion = 24192.893780 eV Total energy + Delta-G solvation = -3983.379284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.46358 -41.43878 -39.62526 -38.39828 -37.53101 -36.02357 -35.54456 -34.15341 -32.17072 -30.80347 -29.65443 -28.64457 -27.28082 -26.12481 -24.17022 -23.36476 -23.24284 -21.85152 -21.22211 -20.11493 -19.15902 -19.08449 -18.11623 -17.51085 -17.28636 -16.94887 -16.69768 -16.59294 -16.22842 -16.04998 -15.60837 -15.24736 -14.99663 -14.84660 -14.69659 -14.41284 -14.25672 -14.18830 -13.85674 -13.78193 -13.56266 -13.25249 -13.18361 -13.08240 -12.94631 -12.70647 -12.53449 -12.38214 -12.07641 -11.99381 -11.82468 -11.62652 -11.55827 -10.84207 -10.76091 -10.65919 -10.40670 -9.90260 -9.59564 -8.37191 -6.42022 0.25369 1.18502 1.26376 1.31694 1.42584 1.49174 2.04187 2.10615 2.28749 2.41436 2.97757 3.18989 3.20894 3.26342 3.46815 3.84946 3.95347 4.19132 4.22925 4.33867 4.35982 4.37185 4.46530 4.54021 4.55359 4.56803 4.72052 4.76368 4.79653 4.83092 4.86833 5.01817 5.04630 5.08967 5.10562 5.14454 5.22516 5.26064 5.47348 5.71670 5.88848 6.15370 6.16697 6.25596 6.54688 6.64541 6.84190 7.16915 7.23654 8.79215 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003304 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.269768 B = 8473.593380 C = 9323.776802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.697 5.697 3 C 0.507 3.493 4 O -0.533 6.533 5 C 0.511 3.489 6 O -0.554 6.554 7 N -0.584 5.584 8 C 0.108 3.892 9 C -0.096 4.096 10 C -0.108 4.108 11 C -0.101 4.101 12 C 0.089 3.911 13 N -0.620 5.620 14 C 0.148 3.852 15 C -0.013 4.013 16 C -0.534 4.534 17 H 0.040 0.960 18 C 0.011 3.989 19 N -0.945 5.945 20 Si 0.948 3.052 21 H -0.251 1.251 22 H -0.267 1.267 23 H -0.283 1.283 24 C 0.508 3.492 25 O -0.579 6.579 26 C 0.128 3.872 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.420 0.580 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.143 0.857 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.045 0.955 41 H -0.007 1.007 42 H 0.031 0.969 43 H 0.268 0.732 44 H 0.051 0.949 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.903 0.747 27.413 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.349 5.349 3 C 0.287 3.713 4 O -0.410 6.410 5 C 0.294 3.706 6 O -0.433 6.433 7 N -0.316 5.316 8 C -0.014 4.014 9 C -0.134 4.134 10 C -0.112 4.112 11 C -0.138 4.138 12 C -0.032 4.032 13 N -0.352 5.352 14 C 0.026 3.974 15 C -0.051 4.051 16 C -0.572 4.572 17 H 0.058 0.942 18 C -0.187 4.187 19 N -0.585 5.585 20 Si 0.771 3.229 21 H -0.175 1.175 22 H -0.191 1.191 23 H -0.208 1.208 24 C 0.296 3.704 25 O -0.459 6.459 26 C 0.006 3.994 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.257 0.743 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.011 0.989 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.350 0.547 26.807 29.953 hybrid contribution 0.507 -1.284 -1.206 1.833 sum -12.844 -0.737 25.601 28.652 Atomic orbital electron populations 1.21914 0.76320 1.05226 1.02554 1.45630 1.09362 1.08140 1.71801 1.19932 0.87807 0.85272 0.78289 1.90731 1.69872 1.31509 1.48912 1.20077 0.88879 0.83279 0.78344 1.90734 1.70407 1.31171 1.50976 1.48379 1.08208 1.06410 1.68651 1.22339 0.96394 0.79714 1.02956 1.22641 0.89808 0.96125 1.04783 1.21614 1.00931 0.97445 0.91177 1.22636 0.91927 1.00839 0.98423 1.22584 0.98293 0.98593 0.83725 1.48810 1.31258 1.47657 1.07495 1.21133 0.97455 0.99570 0.79253 1.19729 0.95462 0.94960 0.94988 1.21288 1.25081 1.14481 0.96363 0.94158 1.25915 0.96813 1.00232 0.95717 1.70042 1.35253 1.40328 1.12845 0.85701 0.79529 0.78839 0.78807 1.17525 1.19134 1.20826 1.21037 0.79899 0.77805 0.91613 1.90694 1.45282 1.46809 1.63115 1.22205 0.79254 0.95047 1.02859 0.92445 0.86476 0.91264 0.74286 0.88268 0.93190 0.83934 0.89331 0.88665 0.83441 0.89473 0.88010 0.88887 0.93601 0.98857 0.95076 0.92255 0.93076 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.70 127.77 1.37 2.37 16 2 N -0.70 -13.03 5.71 -485.90 -2.77 -15.80 16 3 C 0.51 13.10 7.86 87.27 0.69 13.79 16 4 O -0.53 -15.21 14.12 -3.23 -0.05 -15.26 16 5 C 0.51 14.97 7.91 87.27 0.69 15.66 16 6 O -0.55 -18.45 16.76 -3.23 -0.05 -18.50 16 7 N -0.58 -15.37 3.34 -814.73 -2.72 -18.09 16 8 C 0.11 2.34 5.46 86.80 0.47 2.81 16 9 C -0.10 -1.40 5.94 31.37 0.19 -1.22 16 10 C -0.11 -2.22 0.68 -52.74 -0.04 -2.26 16 11 C -0.10 -1.19 6.26 31.28 0.20 -1.00 16 12 C 0.09 1.62 7.37 86.91 0.64 2.27 16 13 N -0.62 -19.79 2.95 -818.18 -2.41 -22.20 16 14 C 0.15 6.01 5.89 86.38 0.51 6.52 16 15 C -0.01 -0.64 4.36 29.85 0.13 -0.51 16 16 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 17 H 0.04 2.58 7.99 -2.91 -0.02 2.55 16 18 C 0.01 0.66 5.47 84.66 0.46 1.12 16 19 N -0.94 -60.14 13.96 21.45 0.30 -59.84 16 20 Si 0.95 46.11 27.47 68.60 1.88 48.00 16 21 H -0.25 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -12.91 6.54 99.48 0.65 -12.26 16 23 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.51 17.43 6.73 87.37 0.59 18.02 16 25 O -0.58 -26.68 17.49 -3.04 -0.05 -26.73 16 26 C 0.13 2.97 5.74 86.30 0.50 3.46 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.42 6.82 8.30 -92.71 -0.77 6.05 16 31 H 0.10 1.77 7.68 -2.39 -0.02 1.75 16 32 H 0.05 1.41 7.58 -2.39 -0.02 1.40 16 33 H 0.14 0.72 7.74 -2.39 -0.02 0.70 16 34 H 0.09 1.37 8.00 -2.38 -0.02 1.36 16 35 H 0.09 1.07 7.97 -2.38 -0.02 1.05 16 36 H 0.15 0.33 7.62 -2.39 -0.02 0.32 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 40 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 41 H -0.01 -0.38 7.20 -2.38 -0.02 -0.40 16 42 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 43 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 44 H 0.05 1.57 7.95 -2.38 -0.02 1.55 16 45 H 0.13 1.89 8.04 -2.39 -0.02 1.87 16 Total: -1.00 -90.07 371.32 0.94 -89.13 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.18 Total: 9.62 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 6.64 Total: 29.69 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -7.61 Total: -115.94 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -0.15 Total: -60.49 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 48.00 kcal Total: -90.07 0.94 -89.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269179759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.671 kcal (2) G-P(sol) polarization free energy of solvation -90.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds