Wall clock time and date at job start Fri Apr 10 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34771 * 120.00047 * 2 1 4 4 O 1.21346 * 120.00352 * 359.97438 * 3 2 1 5 5 C 1.49455 * 119.99816 * 179.97438 * 3 2 1 6 6 O 1.21347 * 119.99979 * 359.97438 * 5 3 2 7 7 N 1.34778 * 120.00062 * 179.97438 * 5 3 2 8 8 C 1.47137 * 125.60408 * 359.97438 * 7 5 3 9 9 C 1.54588 * 107.32608 * 179.09976 * 8 7 5 10 10 C 1.53705 * 102.78414 * 339.11794 * 9 8 7 11 11 C 1.53216 * 111.52737 * 153.97955 * 10 9 8 12 12 C 1.54797 * 101.38752 * 98.84507 * 11 10 9 13 13 N 1.46921 * 105.54023 * 24.18170 * 12 11 10 14 14 C 1.46505 * 124.37763 * 163.28647 * 13 12 11 15 15 C 1.52997 * 109.47288 * 90.00026 * 14 13 12 16 16 C 1.50695 * 109.47452 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99986 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00421 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00166 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99724 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47162 * 89.99748 * 20 18 16 22 22 H 1.48498 * 109.47309 * 210.00074 * 20 18 16 23 23 H 1.48507 * 109.47343 * 329.99624 * 20 18 16 24 24 C 1.34892 * 111.24532 * 343.24905 * 13 12 11 25 25 O 1.21282 * 125.22154 * 181.28124 * 24 13 12 26 26 C 1.47709 * 125.60912 * 180.02562 * 7 5 3 27 27 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47397 * 300.00383 * 1 2 3 29 29 H 1.09001 * 109.46605 * 60.00238 * 1 2 3 30 30 H 0.96999 * 119.99818 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.87411 * 59.66740 * 8 7 5 32 32 H 1.08999 * 109.87497 * 298.53127 * 8 7 5 33 33 H 1.09000 * 110.74943 * 220.79716 * 9 8 7 34 34 H 1.09002 * 110.74732 * 97.44582 * 9 8 7 35 35 H 1.09000 * 111.03897 * 216.87205 * 11 10 9 36 36 H 1.08998 * 111.03689 * 340.77262 * 11 10 9 37 37 H 1.08996 * 110.23051 * 143.20319 * 12 11 10 38 38 H 1.09004 * 110.23068 * 265.07868 * 12 11 10 39 39 H 1.08997 * 109.46968 * 209.99783 * 14 13 12 40 40 H 1.08999 * 109.46781 * 329.99973 * 14 13 12 41 41 H 1.09007 * 109.47097 * 300.00311 * 15 14 13 42 42 H 1.09003 * 109.47032 * 59.99776 * 15 14 13 43 43 H 0.97003 * 119.99844 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.38217 * 83.75766 * 26 7 5 45 45 H 1.08997 * 110.38706 * 321.37406 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5323 2.2181 -0.0005 5 6 3.6335 1.1671 0.0006 6 8 4.2401 0.1162 0.0015 7 7 4.3074 2.3343 0.0001 8 6 3.6997 3.6743 -0.0016 9 6 4.8534 4.7030 0.0215 10 6 6.0311 3.8810 0.5691 11 6 7.3765 4.4466 0.1027 12 6 7.8067 5.2714 1.3399 13 7 7.1022 4.6683 2.4794 14 6 7.4616 4.8853 3.8831 15 6 6.6985 6.0963 4.4236 16 6 7.0677 6.3191 5.8675 17 1 7.7761 5.6629 6.3512 18 6 6.5019 7.3614 6.5708 19 7 6.8245 7.5562 7.8308 20 14 5.2773 8.4969 5.7340 21 1 3.9041 7.9599 5.9102 22 1 5.3615 9.8495 6.3410 23 1 5.5927 8.5839 4.2854 24 6 6.0812 3.8896 2.0663 25 8 5.3200 3.2893 2.7950 26 6 5.7774 2.4786 0.0000 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.9500 -0.8400 0.0004 31 1 3.0745 3.7988 0.8826 32 1 3.1015 3.8088 -0.9028 33 1 4.6181 5.5322 0.6887 34 1 5.0690 5.0642 -0.9841 35 1 8.0881 3.6463 -0.1008 36 1 7.2504 5.0865 -0.7706 37 1 8.8849 5.2014 1.4833 38 1 7.5098 6.3134 1.2201 39 1 7.2006 4.0019 4.4657 40 1 8.5335 5.0675 3.9596 41 1 6.9595 6.9798 3.8409 42 1 5.6266 5.9141 4.3469 43 1 6.4262 8.2892 8.3257 44 1 6.1661 2.4046 -1.0157 45 1 6.2333 1.7216 0.6381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269179760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:16 Heat of formation + Delta-G solvation = -88.573549 kcal Electronic energy + Delta-G solvation = -28179.731509 eV Core-core repulsion = 24197.663078 eV Total energy + Delta-G solvation = -3982.068431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42784 -40.39433 -38.58617 -37.27549 -36.18813 -35.06151 -33.92418 -32.46828 -30.74167 -29.65945 -28.59909 -27.84899 -25.79858 -24.89088 -23.19871 -22.47613 -21.77556 -20.45372 -20.25846 -18.93148 -18.12098 -17.11563 -17.01639 -16.50266 -15.96251 -15.84448 -15.71133 -15.48286 -15.02030 -14.70557 -14.25849 -14.23020 -13.85110 -13.42532 -13.31222 -13.23350 -13.00487 -12.90718 -12.73757 -12.66729 -12.57255 -12.42513 -12.28266 -11.73677 -11.61281 -11.60081 -11.21999 -11.03061 -10.87684 -10.44964 -10.14818 -9.85522 -9.74083 -9.59827 -9.42569 -9.24150 -8.90516 -8.57624 -8.22699 -6.08554 -4.07755 1.27776 2.09076 2.76560 3.06343 3.26805 3.29788 3.34446 3.36744 3.38840 4.04852 4.11186 4.19752 4.34029 4.42178 4.64811 4.82527 4.82852 5.00175 5.10769 5.11748 5.20391 5.25705 5.31268 5.39883 5.42445 5.55589 5.58970 5.63883 5.67142 5.82618 5.87283 5.90372 5.90966 5.99818 6.27072 6.55631 6.76086 6.78714 7.10140 7.14001 7.27956 7.47496 7.55573 7.72366 7.80645 8.43988 8.50372 8.94371 9.53238 11.04544 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003331 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.048435 B = 8403.459572 C = 9313.161041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.708 5.708 3 C 0.510 3.490 4 O -0.511 6.511 5 C 0.524 3.476 6 O -0.527 6.527 7 N -0.580 5.580 8 C 0.109 3.891 9 C -0.111 4.111 10 C -0.117 4.117 11 C -0.116 4.116 12 C 0.101 3.899 13 N -0.615 5.615 14 C 0.137 3.863 15 C -0.024 4.024 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.526 3.474 25 O -0.516 6.516 26 C 0.134 3.866 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.017 0.983 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.085 0.915 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -10.625 -23.742 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.362 5.362 3 C 0.290 3.710 4 O -0.386 6.386 5 C 0.307 3.693 6 O -0.404 6.404 7 N -0.313 5.313 8 C -0.013 4.013 9 C -0.149 4.149 10 C -0.121 4.121 11 C -0.155 4.155 12 C -0.022 4.022 13 N -0.348 5.348 14 C 0.017 3.983 15 C -0.062 4.062 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.192 1.192 24 C 0.311 3.689 25 O -0.391 6.391 26 C 0.012 3.988 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.249 0.751 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.784 -10.679 -23.086 26.086 hybrid contribution -0.442 0.429 -0.131 0.630 sum -6.226 -10.250 -23.217 26.131 Atomic orbital electron populations 1.21670 0.78266 1.02898 1.02861 1.45519 1.08111 1.08791 1.73739 1.20049 0.88390 0.84584 0.77932 1.90766 1.69834 1.30805 1.47181 1.19647 0.88006 0.83170 0.78485 1.90751 1.69772 1.30258 1.49644 1.48174 1.07483 1.06021 1.69606 1.22278 0.95505 0.79758 1.03758 1.22538 0.92434 0.97677 1.02260 1.21643 0.97793 0.96942 0.95714 1.22483 0.94450 1.00263 0.98256 1.22118 0.97846 0.97397 0.84875 1.48713 1.31535 1.46845 1.07711 1.21603 0.99526 1.00538 0.76602 1.19889 0.95987 0.93184 0.97147 1.20954 1.26914 1.14311 0.93871 0.90806 1.24976 0.96255 0.97286 0.94656 1.69904 1.43941 1.31320 1.08733 0.86762 0.82125 0.80143 0.80141 1.20197 1.21303 1.19179 1.19917 0.80786 0.79198 0.88992 1.90740 1.42301 1.45155 1.60861 1.22001 0.79892 0.95583 1.01334 0.90003 0.91561 0.91699 0.75055 0.89736 0.90062 0.89081 0.89045 0.89471 0.88692 0.90141 0.90926 0.90580 0.90863 0.96481 0.96624 0.92617 0.89660 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.71 -6.69 5.71 -67.52 -0.39 -7.08 16 3 C 0.51 6.54 7.86 -11.59 -0.09 6.45 16 4 O -0.51 -7.45 14.12 5.50 0.08 -7.37 16 5 C 0.52 7.36 7.91 -11.58 -0.09 7.27 16 6 O -0.53 -8.14 16.76 5.50 0.09 -8.05 16 7 N -0.58 -7.67 3.34 -171.44 -0.57 -8.25 16 8 C 0.11 1.33 5.46 -2.86 -0.02 1.31 16 9 C -0.11 -1.14 5.95 -25.53 -0.15 -1.29 16 10 C -0.12 -1.36 0.67 -155.38 -0.10 -1.46 16 11 C -0.12 -0.95 6.26 -25.67 -0.16 -1.11 16 12 C 0.10 1.13 7.37 -2.87 -0.02 1.11 16 13 N -0.61 -10.10 2.95 -172.57 -0.51 -10.61 16 14 C 0.14 2.74 5.88 -4.04 -0.02 2.72 16 15 C -0.02 -0.57 4.36 -27.89 -0.12 -0.69 16 16 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 20 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 24 C 0.53 8.98 6.73 -11.37 -0.08 8.91 16 25 O -0.52 -11.19 17.51 5.56 0.10 -11.09 16 26 C 0.13 1.56 5.73 -3.14 -0.02 1.54 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.41 3.30 8.30 -40.82 -0.34 2.96 16 31 H 0.08 1.25 7.59 -51.93 -0.39 0.86 16 32 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 33 H 0.09 1.04 8.00 -51.93 -0.42 0.63 16 34 H 0.09 0.63 7.74 -51.93 -0.40 0.23 16 35 H 0.09 0.59 7.97 -51.93 -0.41 0.18 16 36 H 0.09 0.52 7.62 -51.93 -0.40 0.12 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.65 7.96 -51.93 -0.41 1.24 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 42 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 45 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -37.46 371.35 -7.06 -44.52 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.89 Total: -0.67 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -0.67 Total: 12.69 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.69 Total: -53.04 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.27 Total: -26.51 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.46 -7.06 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269179760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.055 kcal (2) G-P(sol) polarization free energy of solvation -37.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds