Wall clock time and date at job start Fri Apr 10 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34771 * 120.00047 * 2 1 4 4 O 1.21346 * 120.00352 * 359.97438 * 3 2 1 5 5 C 1.49455 * 119.99816 * 179.97438 * 3 2 1 6 6 O 1.21347 * 119.99979 * 359.97438 * 5 3 2 7 7 N 1.34778 * 120.00062 * 179.97438 * 5 3 2 8 8 C 1.47137 * 125.60408 * 359.97438 * 7 5 3 9 9 C 1.54588 * 107.32608 * 179.09976 * 8 7 5 10 10 C 1.53705 * 102.78414 * 339.11794 * 9 8 7 11 11 C 1.53216 * 111.52737 * 153.97955 * 10 9 8 12 12 C 1.54797 * 101.38752 * 98.84507 * 11 10 9 13 13 N 1.46921 * 105.54023 * 24.18170 * 12 11 10 14 14 C 1.46505 * 124.37763 * 163.28647 * 13 12 11 15 15 C 1.52997 * 109.47288 * 90.00026 * 14 13 12 16 16 C 1.50695 * 109.47452 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99986 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00421 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00166 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99724 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47162 * 89.99748 * 20 18 16 22 22 H 1.48498 * 109.47309 * 210.00074 * 20 18 16 23 23 H 1.48507 * 109.47343 * 329.99624 * 20 18 16 24 24 C 1.34892 * 111.24532 * 343.24905 * 13 12 11 25 25 O 1.21282 * 125.22154 * 181.28124 * 24 13 12 26 26 C 1.47709 * 125.60912 * 180.02562 * 7 5 3 27 27 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47397 * 300.00383 * 1 2 3 29 29 H 1.09001 * 109.46605 * 60.00238 * 1 2 3 30 30 H 0.96999 * 119.99818 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.87411 * 59.66740 * 8 7 5 32 32 H 1.08999 * 109.87497 * 298.53127 * 8 7 5 33 33 H 1.09000 * 110.74943 * 220.79716 * 9 8 7 34 34 H 1.09002 * 110.74732 * 97.44582 * 9 8 7 35 35 H 1.09000 * 111.03897 * 216.87205 * 11 10 9 36 36 H 1.08998 * 111.03689 * 340.77262 * 11 10 9 37 37 H 1.08996 * 110.23051 * 143.20319 * 12 11 10 38 38 H 1.09004 * 110.23068 * 265.07868 * 12 11 10 39 39 H 1.08997 * 109.46968 * 209.99783 * 14 13 12 40 40 H 1.08999 * 109.46781 * 329.99973 * 14 13 12 41 41 H 1.09007 * 109.47097 * 300.00311 * 15 14 13 42 42 H 1.09003 * 109.47032 * 59.99776 * 15 14 13 43 43 H 0.97003 * 119.99844 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.38217 * 83.75766 * 26 7 5 45 45 H 1.08997 * 110.38706 * 321.37406 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5323 2.2181 -0.0005 5 6 3.6335 1.1671 0.0006 6 8 4.2401 0.1162 0.0015 7 7 4.3074 2.3343 0.0001 8 6 3.6997 3.6743 -0.0016 9 6 4.8534 4.7030 0.0215 10 6 6.0311 3.8810 0.5691 11 6 7.3765 4.4466 0.1027 12 6 7.8067 5.2714 1.3399 13 7 7.1022 4.6683 2.4794 14 6 7.4616 4.8853 3.8831 15 6 6.6985 6.0963 4.4236 16 6 7.0677 6.3191 5.8675 17 1 7.7761 5.6629 6.3512 18 6 6.5019 7.3614 6.5708 19 7 6.8245 7.5562 7.8308 20 14 5.2773 8.4969 5.7340 21 1 3.9041 7.9599 5.9102 22 1 5.3615 9.8495 6.3410 23 1 5.5927 8.5839 4.2854 24 6 6.0812 3.8896 2.0663 25 8 5.3200 3.2893 2.7950 26 6 5.7774 2.4786 0.0000 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.9500 -0.8400 0.0004 31 1 3.0745 3.7988 0.8826 32 1 3.1015 3.8088 -0.9028 33 1 4.6181 5.5322 0.6887 34 1 5.0690 5.0642 -0.9841 35 1 8.0881 3.6463 -0.1008 36 1 7.2504 5.0865 -0.7706 37 1 8.8849 5.2014 1.4833 38 1 7.5098 6.3134 1.2201 39 1 7.2006 4.0019 4.4657 40 1 8.5335 5.0675 3.9596 41 1 6.9595 6.9798 3.8409 42 1 5.6266 5.9141 4.3469 43 1 6.4262 8.2892 8.3257 44 1 6.1661 2.4046 -1.0157 45 1 6.2333 1.7216 0.6381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269179760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:15 Heat of formation + Delta-G solvation = -118.529153 kcal Electronic energy + Delta-G solvation = -28181.030481 eV Core-core repulsion = 24197.663078 eV Total energy + Delta-G solvation = -3983.367403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.46379 -41.43669 -39.62403 -38.39345 -37.52583 -36.02583 -35.54639 -34.15025 -32.18310 -30.78285 -29.64883 -28.64770 -27.28233 -26.11790 -24.14376 -23.43375 -23.24307 -21.82470 -21.21423 -20.12556 -19.11982 -19.09637 -18.11363 -17.48820 -17.22060 -16.97614 -16.73241 -16.64867 -16.20340 -16.05321 -15.60119 -15.26579 -14.96327 -14.84162 -14.71207 -14.41740 -14.26243 -14.15117 -13.87717 -13.63160 -13.53698 -13.32442 -13.17768 -13.11928 -12.97526 -12.77542 -12.54446 -12.31525 -12.08892 -12.00426 -11.80211 -11.57964 -11.54133 -10.84594 -10.75863 -10.66293 -10.40767 -9.89983 -9.60197 -8.36146 -6.41314 0.25832 1.19419 1.29495 1.32132 1.42567 1.49902 2.04698 2.09117 2.29759 2.40679 2.99003 3.19597 3.21247 3.25810 3.47011 3.83988 3.95102 4.17966 4.23195 4.35337 4.35888 4.37417 4.46808 4.54087 4.54832 4.58215 4.72158 4.76272 4.79318 4.80546 4.86695 5.00169 5.03219 5.09389 5.12013 5.14853 5.21328 5.28395 5.46965 5.72178 5.89557 6.14357 6.17454 6.25437 6.55494 6.65294 6.85138 7.17039 7.24237 8.80270 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003331 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.048435 B = 8403.459572 C = 9313.161041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.696 5.696 3 C 0.504 3.496 4 O -0.536 6.536 5 C 0.514 3.486 6 O -0.550 6.550 7 N -0.584 5.584 8 C 0.109 3.891 9 C -0.102 4.102 10 C -0.108 4.108 11 C -0.096 4.096 12 C 0.088 3.912 13 N -0.620 5.620 14 C 0.147 3.853 15 C -0.012 4.012 16 C -0.534 4.534 17 H 0.038 0.962 18 C 0.009 3.991 19 N -0.946 5.946 20 Si 0.948 3.052 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.242 1.242 24 C 0.508 3.492 25 O -0.579 6.579 26 C 0.132 3.868 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.421 0.579 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.033 0.967 42 H -0.005 1.005 43 H 0.268 0.732 44 H 0.130 0.870 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -9.565 -28.036 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.348 5.348 3 C 0.284 3.716 4 O -0.413 6.413 5 C 0.297 3.703 6 O -0.429 6.429 7 N -0.316 5.316 8 C -0.013 4.013 9 C -0.140 4.140 10 C -0.112 4.112 11 C -0.134 4.134 12 C -0.033 4.033 13 N -0.352 5.352 14 C 0.025 3.975 15 C -0.051 4.051 16 C -0.573 4.573 17 H 0.056 0.944 18 C -0.188 4.188 19 N -0.586 5.586 20 Si 0.772 3.228 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.166 1.166 24 C 0.296 3.704 25 O -0.458 6.458 26 C 0.010 3.990 27 H 0.137 0.863 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.258 0.742 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.159 0.841 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.051 0.949 42 H 0.013 0.987 43 H 0.077 0.923 44 H 0.147 0.853 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.491 -9.620 -27.429 29.581 hybrid contribution -0.498 -0.001 1.327 1.418 sum -5.989 -9.621 -26.102 28.456 Atomic orbital electron populations 1.21907 0.76450 1.05239 1.02453 1.45609 1.09284 1.08131 1.71816 1.20028 0.88051 0.85232 0.78276 1.90747 1.70000 1.31673 1.48904 1.19972 0.88687 0.83268 0.78342 1.90723 1.70289 1.30917 1.50972 1.48371 1.08451 1.06162 1.68661 1.22300 0.96298 0.79973 1.02747 1.22654 0.90508 0.96182 1.04612 1.21625 1.00763 0.97679 0.91170 1.22626 0.91920 1.00862 0.97986 1.22569 0.98592 0.98152 0.83976 1.48804 1.31989 1.46959 1.07406 1.21150 0.99851 0.97398 0.79054 1.19727 0.95070 0.95516 0.94753 1.21296 1.26106 1.13591 0.96279 0.94351 1.25944 0.98365 0.99226 0.95294 1.70045 1.45599 1.32450 1.10504 0.85692 0.78749 0.78008 0.80379 1.20594 1.20038 1.16553 1.21031 0.79711 0.77995 0.91621 1.90697 1.44514 1.47524 1.63109 1.22223 0.78952 0.94725 1.03092 0.86335 0.92630 0.91374 0.74182 0.93625 0.88314 0.90424 0.83849 0.87380 0.84099 0.88204 0.89904 0.93748 0.88998 0.94852 0.98687 0.92280 0.85270 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.39 16 2 N -0.70 -12.85 5.71 -485.89 -2.77 -15.62 16 3 C 0.50 13.07 7.86 87.27 0.69 13.75 16 4 O -0.54 -15.90 14.12 -3.23 -0.05 -15.94 16 5 C 0.51 14.55 7.91 87.27 0.69 15.25 16 6 O -0.55 -17.15 16.76 -3.24 -0.05 -17.20 16 7 N -0.58 -15.05 3.34 -814.67 -2.72 -17.77 16 8 C 0.11 2.54 5.46 86.80 0.47 3.01 16 9 C -0.10 -1.74 5.95 31.37 0.19 -1.55 16 10 C -0.11 -2.21 0.67 -52.74 -0.04 -2.24 16 11 C -0.10 -1.03 6.26 31.28 0.20 -0.83 16 12 C 0.09 1.62 7.37 86.91 0.64 2.26 16 13 N -0.62 -19.72 2.95 -818.22 -2.41 -22.13 16 14 C 0.15 5.99 5.88 86.38 0.51 6.50 16 15 C -0.01 -0.60 4.36 29.85 0.13 -0.47 16 16 C -0.53 -31.52 9.66 25.60 0.25 -31.27 16 17 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 18 C 0.01 0.56 5.47 84.66 0.46 1.02 16 19 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 20 Si 0.95 45.55 27.47 68.60 1.88 47.44 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 24 C 0.51 17.33 6.73 87.36 0.59 17.92 16 25 O -0.58 -26.54 17.51 -3.04 -0.05 -26.59 16 26 C 0.13 2.76 5.73 86.30 0.49 3.26 16 27 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.42 6.48 8.30 -92.71 -0.77 5.71 16 31 H 0.05 1.41 7.59 -2.38 -0.02 1.39 16 32 H 0.10 1.93 7.69 -2.39 -0.02 1.91 16 33 H 0.08 1.59 8.00 -2.39 -0.02 1.57 16 34 H 0.14 1.03 7.74 -2.39 -0.02 1.02 16 35 H 0.11 0.80 7.97 -2.39 -0.02 0.78 16 36 H 0.14 0.36 7.62 -2.39 -0.02 0.35 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.04 2.05 7.96 -2.39 -0.02 2.03 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.03 1.51 7.20 -2.38 -0.02 1.49 16 42 H -0.01 -0.28 7.57 -2.39 -0.02 -0.30 16 43 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 44 H 0.13 1.62 8.04 -2.39 -0.02 1.60 16 45 H 0.06 1.61 7.94 -2.39 -0.02 1.59 16 Total: -1.00 -89.29 371.35 0.94 -88.35 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.18 Total: 10.37 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 6.64 Total: 28.99 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -7.61 Total: -115.41 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -0.15 Total: -59.74 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.44 kcal Total: -89.29 0.94 -88.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269179760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.181 kcal (2) G-P(sol) polarization free energy of solvation -89.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds