Wall clock time and date at job start Fri Apr 10 2020 18:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34787 * 119.99468 * 2 1 4 4 O 1.21350 * 120.00166 * 0.02562 * 3 2 1 5 5 C 1.49445 * 119.99704 * 179.97438 * 3 2 1 6 6 O 1.21350 * 120.00130 * 0.02562 * 5 3 2 7 7 N 1.34780 * 119.99968 * 179.97438 * 5 3 2 8 8 C 1.47143 * 125.73192 * 359.96242 * 7 5 3 9 9 C 1.54266 * 107.24186 * 179.65882 * 8 7 5 10 10 C 1.55426 * 103.01089 * 337.86728 * 9 8 7 11 11 H 1.08995 * 112.32206 * 154.00081 * 10 9 8 12 12 C 1.46913 * 125.73646 * 179.97438 * 7 5 3 13 13 H 1.08999 * 110.01532 * 84.71989 * 12 7 5 14 14 C 1.52324 * 110.85003 * 323.06861 * 12 7 5 15 15 C 1.52992 * 109.47741 * 306.87714 * 14 12 7 16 16 C 1.50303 * 109.18232 * 308.14024 * 15 14 12 17 17 O 1.21279 * 118.56857 * 201.47569 * 16 15 14 18 18 N 1.33128 * 122.86097 * 21.45351 * 16 15 14 19 19 C 1.46502 * 117.26588 * 179.84822 * 18 16 15 20 20 C 1.53001 * 109.47095 * 90.00206 * 19 18 16 21 21 C 1.50690 * 109.47157 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00360 * 359.97438 * 21 20 19 23 23 C 1.37885 * 120.00145 * 180.02562 * 21 20 19 24 24 N 1.31508 * 119.99700 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99945 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47385 * 90.00046 * 25 23 21 27 27 H 1.48504 * 109.46996 * 209.99834 * 25 23 21 28 28 H 1.48503 * 109.47508 * 329.99695 * 25 23 21 29 29 H 1.09001 * 109.47641 * 60.00387 * 1 2 3 30 30 H 1.09005 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47545 * 299.99411 * 1 2 3 32 32 H 0.96993 * 120.00696 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.89219 * 299.07430 * 8 7 5 34 34 H 1.09005 * 109.88982 * 60.10377 * 8 7 5 35 35 H 1.09003 * 110.72691 * 219.48048 * 9 8 7 36 36 H 1.08992 * 110.68570 * 96.23971 * 9 8 7 37 37 H 1.09002 * 109.47036 * 186.87411 * 14 12 7 38 38 H 1.09001 * 109.46690 * 66.87760 * 14 12 7 39 39 H 1.09000 * 109.51679 * 68.05621 * 15 14 12 40 40 H 1.09003 * 109.51289 * 188.22603 * 15 14 12 41 41 H 1.09004 * 109.46555 * 209.99462 * 19 18 16 42 42 H 1.08991 * 109.47171 * 329.99622 * 19 18 16 43 43 H 1.09002 * 109.47265 * 299.99934 * 20 19 18 44 44 H 1.09004 * 109.47242 * 59.99477 * 20 19 18 45 45 H 0.97002 * 119.99837 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5320 2.2182 0.0005 5 6 3.6333 1.1674 0.0006 6 8 4.2401 0.1165 0.0006 7 7 4.3071 2.3347 0.0001 8 6 3.7023 3.6760 -0.0019 9 6 4.8574 4.6985 0.0070 10 6 6.0455 3.8792 0.5839 11 1 7.0113 4.2637 0.2563 12 6 5.7689 2.4816 0.0011 13 1 6.1503 2.4242 -1.0184 14 6 6.4214 1.4044 0.8578 15 6 5.7896 1.4085 2.2512 16 6 5.8237 2.8055 2.8048 17 8 5.7447 2.9555 4.0057 18 7 5.9373 3.8852 2.0344 19 6 5.9545 5.1884 2.7036 20 6 7.3971 5.5677 3.0442 21 6 7.4149 6.9084 3.7319 22 1 6.4899 7.4373 3.9081 23 6 8.6122 7.4605 4.1353 24 7 9.7386 6.8167 3.9204 25 14 8.6343 9.1227 4.9872 26 1 8.5144 8.9286 6.4546 27 1 9.9106 9.8181 4.6826 28 1 7.4956 9.9430 4.5017 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.9501 -0.8399 0.0004 33 1 3.0966 3.8085 -0.8984 34 1 3.0832 3.8050 0.8860 35 1 4.6206 5.5425 0.6549 36 1 5.0787 5.0381 -1.0047 37 1 7.4895 1.6051 0.9426 38 1 6.2706 0.4299 0.3934 39 1 4.7561 1.0687 2.1834 40 1 6.3505 0.7428 2.9073 41 1 5.5272 5.9420 2.0421 42 1 5.3670 5.1340 3.6200 43 1 7.8245 4.8140 3.7055 44 1 7.9846 5.6221 2.1276 45 1 10.5810 7.2053 4.2038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269180274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:23 Heat of formation + Delta-G solvation = -86.041477 kcal Electronic energy + Delta-G solvation = -28998.360654 eV Core-core repulsion = 25016.402022 eV Total energy + Delta-G solvation = -3981.958632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60032 -40.17457 -38.65075 -37.61459 -35.34463 -34.77259 -33.79824 -32.88746 -31.07575 -29.29973 -28.58403 -27.97546 -25.13739 -24.92363 -23.54821 -22.30327 -21.81900 -20.96116 -20.06483 -18.20419 -17.92743 -17.16761 -16.88031 -16.45900 -16.32197 -15.87663 -15.60541 -15.35438 -14.89562 -14.62324 -14.40036 -14.21543 -13.90083 -13.54933 -13.47630 -13.08807 -12.82257 -12.73630 -12.68991 -12.55090 -12.29426 -11.98782 -11.95199 -11.45616 -11.34155 -11.19805 -10.99043 -10.89121 -10.84252 -10.65236 -9.85671 -9.81469 -9.71361 -9.66451 -9.30539 -9.02644 -8.90226 -8.33963 -8.06466 -5.99747 -4.02329 1.18608 2.01938 2.96158 3.13324 3.21735 3.33553 3.38838 3.40847 3.46657 4.01062 4.30300 4.38114 4.47599 4.71054 4.76820 4.77263 4.92934 5.05706 5.06442 5.14078 5.34319 5.36474 5.37128 5.49726 5.62310 5.65932 5.74194 5.79384 5.83740 5.92779 5.93358 6.02361 6.13914 6.25464 6.57359 6.73233 6.83020 6.91473 7.05604 7.41007 7.63638 7.73839 7.75972 8.01122 8.04995 8.38440 8.70282 9.04391 9.61352 11.11770 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.003197 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.542095 B = 8755.985907 C = 9039.633497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.708 5.708 3 C 0.506 3.494 4 O -0.511 6.511 5 C 0.521 3.479 6 O -0.520 6.520 7 N -0.580 5.580 8 C 0.110 3.890 9 C -0.153 4.153 10 C 0.138 3.862 11 H 0.112 0.888 12 C 0.129 3.871 13 H 0.099 0.901 14 C -0.133 4.133 15 C -0.126 4.126 16 C 0.512 3.488 17 O -0.547 6.547 18 N -0.591 5.591 19 C 0.106 3.894 20 C 0.017 3.983 21 C -0.519 4.519 22 H 0.056 0.944 23 C 0.058 3.942 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.273 1.273 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.014 0.986 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 -13.887 -14.343 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.361 5.361 3 C 0.287 3.713 4 O -0.385 6.385 5 C 0.304 3.696 6 O -0.397 6.397 7 N -0.314 5.314 8 C -0.012 4.012 9 C -0.191 4.191 10 C 0.032 3.968 11 H 0.130 0.870 12 C 0.026 3.974 13 H 0.117 0.883 14 C -0.171 4.171 15 C -0.166 4.166 16 C 0.300 3.700 17 O -0.425 6.425 18 N -0.323 5.323 19 C -0.015 4.015 20 C -0.021 4.021 21 C -0.558 4.558 22 H 0.074 0.926 23 C -0.143 4.143 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.206 1.206 27 H -0.213 1.213 28 H -0.198 1.198 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.818 -13.683 -13.705 24.385 hybrid contribution 0.299 0.558 0.414 0.757 sum -14.518 -13.125 -13.290 23.658 Atomic orbital electron populations 1.21672 0.78265 1.02933 1.02854 1.45529 1.08121 1.08793 1.73676 1.20131 0.88508 0.84602 0.78076 1.90779 1.69843 1.30811 1.47101 1.19663 0.87929 0.83296 0.78666 1.90728 1.69322 1.30287 1.49322 1.48248 1.07355 1.06180 1.69640 1.22227 0.95794 0.79757 1.03442 1.23333 0.94221 0.98670 1.02885 1.21981 0.99551 0.93959 0.81286 0.87041 1.21885 0.79372 0.95468 1.00628 0.88276 1.21765 1.00323 1.00391 0.94645 1.21555 1.03049 0.94798 0.97241 1.19928 0.76631 0.86592 0.86850 1.90731 1.50195 1.86646 1.14935 1.47266 1.71424 1.08302 1.05325 1.21990 1.02015 0.80786 0.96700 1.19322 0.89487 0.96558 0.96766 1.21091 0.92829 1.03534 1.38308 0.92587 1.24991 0.95656 0.97691 0.95953 1.69970 0.97721 1.38376 1.47217 0.86574 0.77326 0.83948 0.80018 1.20640 1.21267 1.19838 0.91678 0.89982 0.91597 0.75028 0.90143 0.90290 0.88045 0.89239 0.89806 0.88235 0.89734 0.88386 0.91595 0.90615 0.96045 0.96722 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.71 -5.73 5.71 -67.52 -0.39 -6.11 16 3 C 0.51 5.70 7.86 -11.58 -0.09 5.61 16 4 O -0.51 -6.78 14.13 5.50 0.08 -6.70 16 5 C 0.52 6.23 6.41 -11.59 -0.07 6.16 16 6 O -0.52 -6.56 13.75 5.50 0.08 -6.49 16 7 N -0.58 -6.79 2.82 -164.85 -0.46 -7.26 16 8 C 0.11 1.24 5.46 -3.03 -0.02 1.22 16 9 C -0.15 -1.65 6.37 -24.78 -0.16 -1.81 16 10 C 0.14 1.78 3.67 -66.72 -0.25 1.54 16 11 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.13 1.46 3.27 -67.56 -0.22 1.24 16 13 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 14 C -0.13 -1.62 4.95 -27.08 -0.13 -1.76 16 15 C -0.13 -1.88 5.59 -28.08 -0.16 -2.04 16 16 C 0.51 9.76 7.45 -11.91 -0.09 9.67 16 17 O -0.55 -13.01 16.17 5.56 0.09 -12.92 16 18 N -0.59 -10.32 2.50 -165.49 -0.41 -10.73 16 19 C 0.11 2.20 4.84 -4.04 -0.02 2.18 16 20 C 0.02 0.43 5.28 -27.89 -0.15 0.28 16 21 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 22 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 23 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 24 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 25 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.41 2.72 8.30 -40.82 -0.34 2.39 16 33 H 0.08 0.83 7.67 -51.93 -0.40 0.43 16 34 H 0.08 1.04 7.62 -51.93 -0.40 0.65 16 35 H 0.10 1.21 5.85 -51.93 -0.30 0.91 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.18 6.28 -51.93 -0.33 0.86 16 39 H 0.08 1.26 6.13 -51.93 -0.32 0.94 16 40 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.21 5.87 -51.93 -0.30 0.91 16 42 H 0.08 1.75 7.13 -51.93 -0.37 1.38 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -35.78 357.94 -7.56 -43.34 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.52 Total: 0.98 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.12 Total: 10.02 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.53 Total: -50.40 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.24 Total: -26.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.78 -7.56 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269180274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.706 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds