Wall clock time and date at job start Fri Apr 10 2020 18:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34787 * 119.99468 * 2 1 4 4 O 1.21350 * 120.00166 * 0.02562 * 3 2 1 5 5 C 1.49445 * 119.99704 * 179.97438 * 3 2 1 6 6 O 1.21350 * 120.00130 * 0.02562 * 5 3 2 7 7 N 1.34780 * 119.99968 * 179.97438 * 5 3 2 8 8 C 1.47143 * 125.73192 * 359.96242 * 7 5 3 9 9 C 1.54266 * 107.24186 * 179.65882 * 8 7 5 10 10 C 1.55426 * 103.01089 * 337.86728 * 9 8 7 11 11 H 1.08995 * 112.32206 * 154.00081 * 10 9 8 12 12 C 1.46913 * 125.73646 * 179.97438 * 7 5 3 13 13 H 1.08999 * 110.01532 * 84.71989 * 12 7 5 14 14 C 1.52324 * 110.85003 * 323.06861 * 12 7 5 15 15 C 1.52992 * 109.47741 * 306.87714 * 14 12 7 16 16 C 1.50303 * 109.18232 * 308.14024 * 15 14 12 17 17 O 1.21279 * 118.56857 * 201.47569 * 16 15 14 18 18 N 1.33128 * 122.86097 * 21.45351 * 16 15 14 19 19 C 1.46502 * 117.26588 * 179.84822 * 18 16 15 20 20 C 1.53001 * 109.47095 * 90.00206 * 19 18 16 21 21 C 1.50690 * 109.47157 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00360 * 359.97438 * 21 20 19 23 23 C 1.37885 * 120.00145 * 180.02562 * 21 20 19 24 24 N 1.31508 * 119.99700 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99945 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47385 * 90.00046 * 25 23 21 27 27 H 1.48504 * 109.46996 * 209.99834 * 25 23 21 28 28 H 1.48503 * 109.47508 * 329.99695 * 25 23 21 29 29 H 1.09001 * 109.47641 * 60.00387 * 1 2 3 30 30 H 1.09005 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47545 * 299.99411 * 1 2 3 32 32 H 0.96993 * 120.00696 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.89219 * 299.07430 * 8 7 5 34 34 H 1.09005 * 109.88982 * 60.10377 * 8 7 5 35 35 H 1.09003 * 110.72691 * 219.48048 * 9 8 7 36 36 H 1.08992 * 110.68570 * 96.23971 * 9 8 7 37 37 H 1.09002 * 109.47036 * 186.87411 * 14 12 7 38 38 H 1.09001 * 109.46690 * 66.87760 * 14 12 7 39 39 H 1.09000 * 109.51679 * 68.05621 * 15 14 12 40 40 H 1.09003 * 109.51289 * 188.22603 * 15 14 12 41 41 H 1.09004 * 109.46555 * 209.99462 * 19 18 16 42 42 H 1.08991 * 109.47171 * 329.99622 * 19 18 16 43 43 H 1.09002 * 109.47265 * 299.99934 * 20 19 18 44 44 H 1.09004 * 109.47242 * 59.99477 * 20 19 18 45 45 H 0.97002 * 119.99837 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5320 2.2182 0.0005 5 6 3.6333 1.1674 0.0006 6 8 4.2401 0.1165 0.0006 7 7 4.3071 2.3347 0.0001 8 6 3.7023 3.6760 -0.0019 9 6 4.8574 4.6985 0.0070 10 6 6.0455 3.8792 0.5839 11 1 7.0113 4.2637 0.2563 12 6 5.7689 2.4816 0.0011 13 1 6.1503 2.4242 -1.0184 14 6 6.4214 1.4044 0.8578 15 6 5.7896 1.4085 2.2512 16 6 5.8237 2.8055 2.8048 17 8 5.7447 2.9555 4.0057 18 7 5.9373 3.8852 2.0344 19 6 5.9545 5.1884 2.7036 20 6 7.3971 5.5677 3.0442 21 6 7.4149 6.9084 3.7319 22 1 6.4899 7.4373 3.9081 23 6 8.6122 7.4605 4.1353 24 7 9.7386 6.8167 3.9204 25 14 8.6343 9.1227 4.9872 26 1 8.5144 8.9286 6.4546 27 1 9.9106 9.8181 4.6826 28 1 7.4956 9.9430 4.5017 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.9501 -0.8399 0.0004 33 1 3.0966 3.8085 -0.8984 34 1 3.0832 3.8050 0.8860 35 1 4.6206 5.5425 0.6549 36 1 5.0787 5.0381 -1.0047 37 1 7.4895 1.6051 0.9426 38 1 6.2706 0.4299 0.3934 39 1 4.7561 1.0687 2.1834 40 1 6.3505 0.7428 2.9073 41 1 5.5272 5.9420 2.0421 42 1 5.3670 5.1340 3.6200 43 1 7.8245 4.8140 3.7055 44 1 7.9846 5.6221 2.1276 45 1 10.5810 7.2053 4.2038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269180274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:23 Heat of formation + Delta-G solvation = -112.723889 kcal Electronic energy + Delta-G solvation = -28999.517690 eV Core-core repulsion = 25016.402022 eV Total energy + Delta-G solvation = -3983.115668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.66302 -41.24589 -39.74948 -38.74076 -36.64623 -35.83603 -35.04264 -34.71176 -32.35730 -31.03841 -29.65433 -28.66604 -26.98207 -25.87900 -24.72479 -23.68093 -22.94329 -22.32821 -21.05252 -19.36821 -18.84551 -18.79137 -17.88900 -17.83818 -17.66021 -17.13303 -16.69237 -16.59560 -16.35813 -15.83317 -15.56188 -15.26810 -14.94101 -14.78309 -14.62841 -14.30021 -14.29077 -13.99261 -13.89171 -13.72811 -13.49647 -13.14963 -12.97888 -12.89340 -12.85039 -12.55178 -12.38025 -12.32073 -12.08858 -12.01754 -11.78678 -11.66783 -11.38281 -10.76233 -10.56619 -10.45689 -10.35809 -9.85554 -9.63977 -8.21075 -6.32423 0.30685 1.20433 1.39862 1.42282 1.52626 1.62574 2.03417 2.09664 2.41836 2.42523 3.12825 3.13659 3.36946 3.45108 3.54711 3.72526 3.93402 4.03735 4.20023 4.27690 4.36981 4.39665 4.51945 4.58319 4.62987 4.68363 4.72841 4.79025 4.80306 4.90676 4.93823 4.97181 5.02289 5.12644 5.15622 5.22259 5.28556 5.50125 5.62030 5.84006 5.96387 6.18626 6.20185 6.56132 6.61914 6.82865 6.90992 7.20002 7.36648 8.91032 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.003197 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.542095 B = 8755.985907 C = 9039.633497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.695 5.695 3 C 0.501 3.499 4 O -0.537 6.537 5 C 0.519 3.481 6 O -0.528 6.528 7 N -0.583 5.583 8 C 0.116 3.884 9 C -0.142 4.142 10 C 0.124 3.876 11 H 0.121 0.879 12 C 0.133 3.867 13 H 0.137 0.863 14 C -0.127 4.127 15 C -0.116 4.116 16 C 0.502 3.498 17 O -0.607 6.607 18 N -0.585 5.585 19 C 0.123 3.877 20 C 0.030 3.970 21 C -0.541 4.541 22 H 0.063 0.937 23 C 0.001 3.999 24 N -0.932 5.932 25 Si 0.966 3.034 26 H -0.280 1.280 27 H -0.279 1.279 28 H -0.257 1.257 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.422 0.578 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.047 0.953 43 H -0.029 1.029 44 H 0.006 0.994 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.637 -13.767 -16.526 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.348 5.348 3 C 0.281 3.719 4 O -0.415 6.415 5 C 0.302 3.698 6 O -0.406 6.406 7 N -0.317 5.317 8 C -0.006 4.006 9 C -0.180 4.180 10 C 0.020 3.980 11 H 0.139 0.861 12 C 0.031 3.969 13 H 0.154 0.846 14 C -0.165 4.165 15 C -0.156 4.156 16 C 0.291 3.709 17 O -0.489 6.489 18 N -0.315 5.315 19 C 0.000 4.000 20 C -0.008 4.008 21 C -0.579 4.579 22 H 0.081 0.919 23 C -0.196 4.196 24 N -0.572 5.572 25 Si 0.790 3.210 26 H -0.206 1.206 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.259 0.741 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.066 0.934 43 H -0.011 1.011 44 H 0.025 0.975 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.709 -13.598 -15.946 26.191 hybrid contribution 0.553 0.440 1.098 1.305 sum -15.156 -13.158 -14.849 24.966 Atomic orbital electron populations 1.21882 0.76703 1.05125 1.02362 1.45600 1.09147 1.08234 1.71792 1.20132 0.88288 0.85142 0.78326 1.90768 1.70093 1.31754 1.48854 1.19841 0.88335 0.83199 0.78401 1.90716 1.69562 1.30477 1.49813 1.48304 1.07533 1.06310 1.69523 1.22167 0.95781 0.79709 1.02980 1.23326 0.92583 0.97648 1.04436 1.22391 1.01128 0.96246 0.78233 0.86138 1.21997 0.79272 0.93605 1.02025 0.84578 1.21757 1.00421 1.01450 0.92821 1.21493 1.03510 0.91658 0.98959 1.20741 0.75456 0.88380 0.86275 1.90695 1.52991 1.87635 1.17619 1.47289 1.70201 1.06612 1.07398 1.21543 0.98245 0.83349 0.96819 1.19115 0.92176 0.94547 0.94971 1.21542 0.93310 1.04478 1.38614 0.91884 1.25960 0.95192 1.01927 0.96572 1.70102 0.98440 1.40357 1.48291 0.85433 0.78080 0.79004 0.78435 1.20609 1.20438 1.18078 0.91694 0.86503 0.92514 0.74053 0.88703 0.92766 0.89207 0.85548 0.89322 0.87131 0.89546 0.88303 0.88569 0.93419 1.01083 0.97532 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.70 127.77 1.37 2.17 16 2 N -0.69 -10.09 5.71 -485.88 -2.77 -12.86 16 3 C 0.50 10.69 7.86 87.27 0.69 11.38 16 4 O -0.54 -13.89 14.13 -3.25 -0.05 -13.93 16 5 C 0.52 11.55 6.41 87.27 0.56 12.11 16 6 O -0.53 -12.28 13.75 -3.25 -0.04 -12.32 16 7 N -0.58 -12.51 2.82 -793.83 -2.23 -14.75 16 8 C 0.12 2.42 5.46 86.69 0.47 2.89 16 9 C -0.14 -2.71 6.37 31.86 0.20 -2.51 16 10 C 0.12 2.99 3.67 46.34 0.17 3.16 16 11 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 12 C 0.13 2.66 3.27 45.00 0.15 2.81 16 13 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.13 -2.87 4.95 30.37 0.15 -2.72 16 15 C -0.12 -3.46 5.59 29.72 0.17 -3.29 16 16 C 0.50 19.77 7.45 87.79 0.65 20.43 16 17 O -0.61 -30.64 16.17 -3.02 -0.05 -30.69 16 18 N -0.59 -20.66 2.50 -796.81 -1.99 -22.65 16 19 C 0.12 5.24 4.84 86.38 0.42 5.65 16 20 C 0.03 1.61 5.28 29.85 0.16 1.77 16 21 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 22 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 23 C 0.00 0.09 5.46 84.66 0.46 0.55 16 24 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 25 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 28 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.42 4.72 8.30 -92.71 -0.77 3.95 16 33 H 0.09 1.74 7.67 -2.39 -0.02 1.72 16 34 H 0.05 1.42 7.62 -2.38 -0.02 1.40 16 35 H 0.09 1.97 5.85 -2.39 -0.01 1.96 16 36 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.11 2.35 6.28 -2.39 -0.01 2.33 16 39 H 0.09 2.55 6.13 -2.39 -0.01 2.54 16 40 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.10 3.51 5.87 -2.39 -0.01 3.49 16 42 H 0.05 2.30 7.13 -2.39 -0.02 2.29 16 43 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -81.21 357.94 1.28 -79.93 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.25 Total: 14.18 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.85 Total: 23.46 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -6.71 Total: -107.44 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -0.14 Total: -56.94 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -81.21 1.28 -79.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269180274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.790 kcal (2) G-P(sol) polarization free energy of solvation -81.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds